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Items: 1 to 50 of 146

1.

Statistical shape modeling of femur shape variability in female patients with hip dysplasia.

Gaffney BMM, Hillen TJ, Nepple JJ, Clohisy JC, Harris MD.

J Orthop Res. 2019 Jan 17. doi: 10.1002/jor.24214. [Epub ahead of print]

PMID:
30656719
2.

Complete Genome Sequences of 44 Arthrobacter Phages.

Klyczek KK, Jacobs-Sera D, Adair TL, Adams SD, Ball SL, Benjamin RC, Bonilla JA, Breitenberger CA, Daniels CJ, Gaffney BL, Harrison M, Hughes LE, King RA, Krukonis GP, Lopez AJ, Monsen-Collar K, Pizzorno MC, Rinehart CA; SEA-PHAGES Program; PHIRE Program, Staples AK, Stowe EL, Garlena RA, Russell DA, Cresawn SG, Pope WH, Hatfull GF.

Genome Announc. 2018 Feb 1;6(5). pii: e01474-17. doi: 10.1128/genomeA.01474-17.

3.

Trunk movement compensations and corresponding core muscle demand during step ambulation in people with unilateral transtibial amputation.

Gaffney BMM, Christiansen CL, Murray AM, Davidson BS.

J Electromyogr Kinesiol. 2018 Apr;39:16-25. doi: 10.1016/j.jelekin.2018.01.002. Epub 2018 Feb 3.

PMID:
29413449
4.

Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger.

King RA, Slowan-Pomeroy TM, Thomas JE, Ahmed T, Alexander KL, Biddle JM, Daniels MK, Rowlett JR, Senay TE, Rinehart CA, Staples AK, Rowland NS, Gaffney BL, Emmons CB, Hauk MD, Nguyen RL, Naegele L, Strickland SS, Briggs LA, Rush AN, Saha S, Sadana R, Cresawn SG, Russell DA, Garlena RA, Pope WH, Jacobs-Sera D, Hatfull GF.

Genome Announc. 2017 Nov 9;5(45). pii: e01122-17. doi: 10.1128/genomeA.01122-17.

5.

CC-115, a dual inhibitor of mTOR kinase and DNA-PK, blocks DNA damage repair pathways and selectively inhibits ATM-deficient cell growth in vitro.

Tsuji T, Sapinoso LM, Tran T, Gaffney B, Wong L, Sankar S, Raymon HK, Mortensen DS, Xu S.

Oncotarget. 2017 Aug 18;8(43):74688-74702. doi: 10.18632/oncotarget.20342. eCollection 2017 Sep 26.

6.

Biomechanical compensations of the trunk and lower extremities during stepping tasks after unilateral transtibial amputation.

Murray AM, Gaffney BM, Davidson BS, Christiansen CL.

Clin Biomech (Bristol, Avon). 2017 Nov;49:64-71. doi: 10.1016/j.clinbiomech.2017.08.010. Epub 2017 Aug 30.

7.

Trunk kinetic effort during step ascent and descent in patients with transtibial amputation using angular momentum separation.

Gaffney BMM, Christiansen CL, Murray AM, Davidson BS.

Clin Biomech (Bristol, Avon). 2017 Oct;48:88-96. doi: 10.1016/j.clinbiomech.2017.07.014. Epub 2017 Jul 29.

8.

Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages.

Klyczek KK, Bonilla JA, Jacobs-Sera D, Adair TL, Afram P, Allen KG, Archambault ML, Aziz RM, Bagnasco FG, Ball SL, Barrett NA, Benjamin RC, Blasi CJ, Borst K, Braun MA, Broomell H, Brown CB, Brynell ZS, Bue AB, Burke SO, Casazza W, Cautela JA, Chen K, Chimalakonda NS, Chudoff D, Connor JA, Cross TS, Curtis KN, Dahlke JA, Deaton BM, Degroote SJ, DeNigris DM, DeRuff KC, Dolan M, Dunbar D, Egan MS, Evans DR, Fahnestock AK, Farooq A, Finn G, Fratus CR, Gaffney BL, Garlena RA, Garrigan KE, Gibbon BC, Goedde MA, Guerrero Bustamante CA, Harrison M, Hartwell MC, Heckman EL, Huang J, Hughes LE, Hyduchak KM, Jacob AE, Kaku M, Karstens AW, Kenna MA, Khetarpal S, King RA, Kobokovich AL, Kolev H, Konde SA, Kriese E, Lamey ME, Lantz CN, Lapin JS, Lawson TO, Lee IY, Lee SM, Lee-Soety JY, Lehmann EM, London SC, Lopez AJ, Lynch KC, Mageeney CM, Martynyuk T, Mathew KJ, Mavrich TN, McDaniel CM, McDonald H, McManus CJ, Medrano JE, Mele FE, Menninger JE, Miller SN, Minick JE, Nabua CT, Napoli CK, Nkangabwa M, Oates EA, Ott CT, Pellerino SK, Pinamont WJ, Pirnie RT, Pizzorno MC, Plautz EJ, Pope WH, Pruett KM, Rickstrew G, Rimple PA, Rinehart CA, Robinson KM, Rose VA, Russell DA, Schick AM, Schlossman J, Schneider VM, Sells CA, Sieker JW, Silva MP, Silvi MM, Simon SE, Staples AK, Steed IL, Stowe EL, Stueven NA, Swartz PT, Sweet EA, Sweetman AT, Tender C, Terry K, Thomas C, Thomas DS, Thompson AR, Vanderveen L, Varma R, Vaught HL, Vo QD, Vonberg ZT, Ware VC, Warrad YM, Wathen KE, Weinstein JL, Wyper JF, Yankauskas JR, Zhang C, Hatfull GF.

PLoS One. 2017 Jul 17;12(7):e0180517. doi: 10.1371/journal.pone.0180517. eCollection 2017.

9.

Exceptional durable response to everolimus in a patient with biphenotypic breast cancer harboring an STK11 variant.

Parachoniak CA, Rankin A, Gaffney B, Hartmaier R, Spritz D, Erlich RL, Miller VA, Morosini D, Stephens P, Ross JS, Keech J Jr, Chmielecki J.

Cold Spring Harb Mol Case Stud. 2017 Sep 1;3(5). pii: a000778. doi: 10.1101/mcs.a000778. Print 2017 Sep.

10.

Separation of rotational and translational segmental momentum to assess movement coordination during walking.

Gaffney BM, Christiansen CL, Murray AM, Silverman AK, Davidson BS.

Hum Mov Sci. 2017 Jan;51:99-111. doi: 10.1016/j.humov.2016.12.001. Epub 2016 Dec 22.

11.

Identification of trunk and pelvis movement compensations in patients with transtibial amputation using angular momentum separation.

Gaffney BM, Murray AM, Christiansen CL, Davidson BS.

Gait Posture. 2016 Mar;45:151-6. doi: 10.1016/j.gaitpost.2016.01.015. Epub 2016 Jan 25.

12.

Nuclease-Resistant c-di-AMP Derivatives That Differentially Recognize RNA and Protein Receptors.

Meehan RE, Torgerson CD, Gaffney BL, Jones RA, Strobel SA.

Biochemistry. 2016 Feb 16;55(6):837-49. doi: 10.1021/acs.biochem.5b00965. Epub 2016 Feb 3.

13.

Evaluation of Novel EMG Biofeedback for Postural Correction During Computer Use.

Gaffney BM, Maluf KS, Davidson BS.

Appl Psychophysiol Biofeedback. 2016 Jun;41(2):181-9. doi: 10.1007/s10484-015-9328-3.

PMID:
26718205
14.

Multi-Joint Compensatory Effects of Unilateral Total Knee Arthroplasty During High-Demand Tasks.

Gaffney BM, Harris MD, Davidson BS, Stevens-Lapsley JE, Christiansen CL, Shelburne KB.

Ann Biomed Eng. 2016 Aug;44(8):2529-41. doi: 10.1007/s10439-015-1524-z. Epub 2015 Dec 14.

15.

Connecting lipoxygenase function to structure by electron paramagnetic resonance.

Gaffney BJ.

Acc Chem Res. 2014 Dec 16;47(12):3588-95. doi: 10.1021/ar500290r. Epub 2014 Oct 23.

16.

Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.

Wu X, Gaffney B, Hunt AG, Li QQ.

BMC Genomics. 2014 Jul 21;15:615. doi: 10.1186/1471-2164-15-615.

17.

Fluctuations of an exposed π-helix involved in lipoxygenase substrate recognition.

Bradshaw MD, Gaffney BJ.

Biochemistry. 2014 Aug 12;53(31):5102-10. doi: 10.1021/bi500768c. Epub 2014 Jul 29.

18.

Associations between cervical and scapular posture and the spatial distribution of trapezius muscle activity.

Gaffney BM, Maluf KS, Curran-Everett D, Davidson BS.

J Electromyogr Kinesiol. 2014 Aug;24(4):542-9. doi: 10.1016/j.jelekin.2014.04.008. Epub 2014 Apr 28.

PMID:
24875461
19.

Synthesis of capped RNA using a DMT group as a purification handle.

Veliath E, Gaffney BL, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2014;33(1):40-52. doi: 10.1080/15257770.2013.864417.

PMID:
24588755
20.

Synthesis of c-di-GMP analogs with thiourea, urea, carbodiimide, and guanidinium linkages.

Gaffney BL, Jones RA.

Org Lett. 2014 Jan 3;16(1):158-61. doi: 10.1021/ol403154w. Epub 2013 Dec 6.

21.

Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa.

Garreta A, Val-Moraes SP, García-Fernández Q, Busquets M, Juan C, Oliver A, Ortiz A, Gaffney BJ, Fita I, Manresa À, Carpena X.

FASEB J. 2013 Dec;27(12):4811-21. doi: 10.1096/fj.13-235952. Epub 2013 Aug 28.

22.

A cost-minimisation study of 1,001 NHS Direct users.

Lambert R, Fordham R, Large S, Gaffney B.

BMC Health Serv Res. 2013 Aug 8;13:300. doi: 10.1186/1472-6963-13-300.

23.

Structure-function analysis of STING activation by c[G(2',5')pA(3',5')p] and targeting by antiviral DMXAA.

Gao P, Ascano M, Zillinger T, Wang W, Dai P, Serganov AA, Gaffney BL, Shuman S, Jones RA, Deng L, Hartmann G, Barchet W, Tuschl T, Patel DJ.

Cell. 2013 Aug 15;154(4):748-62. doi: 10.1016/j.cell.2013.07.023. Epub 2013 Aug 1.

24.

Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.

Gao P, Ascano M, Wu Y, Barchet W, Gaffney BL, Zillinger T, Serganov AA, Liu Y, Jones RA, Hartmann G, Tuschl T, Patel DJ.

Cell. 2013 May 23;153(5):1094-107. doi: 10.1016/j.cell.2013.04.046. Epub 2013 May 3.

25.

Synthesis of biotinylated c-di-gmp and c-di-amp using click conjugation.

Gaffney BL, Stebbins ND, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2013;32(1):1-16. doi: 10.1080/15257770.2012.748196.

26.

Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase.

Shanahan CA, Gaffney BL, Jones RA, Strobel SA.

Biochemistry. 2013 Jan 15;52(2):365-77. doi: 10.1021/bi301510v. Epub 2013 Jan 3.

27.

Locating a lipid at the portal to the lipoxygenase active site.

Gaffney BJ, Bradshaw MD, Frausto SD, Wu F, Freed JH, Borbat P.

Biophys J. 2012 Nov 21;103(10):2134-44. doi: 10.1016/j.bpj.2012.10.002. Epub 2012 Nov 20.

28.

Genome-wide control of polyadenylation site choice by CPSF30 in Arabidopsis.

Thomas PE, Wu X, Liu M, Gaffney B, Ji G, Li QQ, Hunt AG.

Plant Cell. 2012 Nov;24(11):4376-88. doi: 10.1105/tpc.112.096107. Epub 2012 Nov 6.

29.

One-flask synthesis of cyclic diguanosine monophosphate (c-di-GMP).

Gaffney BL, Jones RA.

Curr Protoc Nucleic Acid Chem. 2012 Mar;Chapter 14:Unit 14.8.1-7. doi: 10.1002/0471142700.nc1408s48.

30.

Is dieting behaviour decreasing in young adolescents?

Whittle CR, Yarnell JW, Stevenson M, McCay N, Gaffney BP, Shields MD, Woodside JV.

Public Health Nutr. 2013 May;16(5):841-7. doi: 10.1017/S1368980011002965. Epub 2011 Nov 25.

PMID:
22115284
31.

Synthesis and characterization of C8 analogs of c-di-GMP.

Veliath E, Kim S, Gaffney BL, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2011 Nov;30(11):961-78. doi: 10.1080/15257770.2011.624567.

PMID:
22060558
32.

Differential analogue binding by two classes of c-di-GMP riboswitches.

Shanahan CA, Gaffney BL, Jones RA, Strobel SA.

J Am Chem Soc. 2011 Oct 5;133(39):15578-92. doi: 10.1021/ja204650q. Epub 2011 Sep 8.

33.

Structural basis of HIV-1 resistance to AZT by excision.

Tu X, Das K, Han Q, Bauman JD, Clark AD Jr, Hou X, Frenkel YV, Gaffney BL, Jones RA, Boyer PL, Hughes SH, Sarafianos SG, Arnold E.

Nat Struct Mol Biol. 2010 Oct;17(10):1202-9. doi: 10.1038/nsmb.1908. Epub 2010 Sep 19.

34.

Promoting self care. NHS Direct plays a major role.

Gaffney B, Heymann T.

BMJ. 2010 Aug 27;341:c4700. doi: 10.1136/bmj.c4700. No abstract available.

PMID:
20801985
35.

Synthesis of Boranoate, Selenoate, and Thioate Analogs of AZTp(4)A and Ap(4)A.

Han Q, Sarafianos SG, Arnold E, Parniak MA, Gaffney BL, Jones RA.

Tetrahedron. 2009 Sep 19;65(38):7915-7920.

36.

One-flask syntheses of c-di-GMP and the [Rp,Rp] and [Rp,Sp] thiophosphate analogues.

Gaffney BL, Veliath E, Zhao J, Jones RA.

Org Lett. 2010 Jul 16;12(14):3269-71. doi: 10.1021/ol101236b.

37.

Preparation of DNA and RNA fragments containing guanine N(2)-thioalkyl tethers.

Hou X, Wang G, Gaffney BL, Jones RA.

Curr Protoc Nucleic Acid Chem. 2010 Jun;Chapter 5:Unit 5.8. doi: 10.1002/0471142700.nc0508s41.

38.

EPR of Mononuclear Non-Heme Iron Proteins.

Gaffney BJ.

Biol Magn Reson. 2009 Jun 19;28:233-268.

39.

Modulation of RNA metal binding by flanking bases: 15N NMR evaluation of GC, tandem GU, and tandem GA sites.

Wang W, Zhao J, Han Q, Wang G, Yang G, Shallop AJ, Liu J, Gaffney BL, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2009 May;28(5):424-34. doi: 10.1080/15257770903044234.

40.

Thiophosphate analogs of c-di-GMP: impact on polymorphism.

Zhao J, Veliath E, Kim S, Gaffney BL, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2009 May;28(5):352-78. doi: 10.1080/15257770903044523.

41.

Synthesis of guanosine and deoxyguanosine phosphoramidites with cross-linkable thioalkyl tethers for direct incorporation into RNA and DNA.

Hou X, Wang G, Gaffney BL, Jones RA.

Nucleosides Nucleotides Nucleic Acids. 2009 Nov;28(11):1076-94. doi: 10.1080/15257770903368385.

42.

Structural basis for the role of the K65R mutation in HIV-1 reverse transcriptase polymerization, excision antagonism, and tenofovir resistance.

Das K, Bandwar RP, White KL, Feng JY, Sarafianos SG, Tuske S, Tu X, Clark AD Jr, Boyer PL, Hou X, Gaffney BL, Jones RA, Miller MD, Hughes SH, Arnold E.

J Biol Chem. 2009 Dec 11;284(50):35092-100. doi: 10.1074/jbc.M109.022525. Epub 2009 Oct 7.

43.

Syntheses of specifically 15N-labeled adenosine and guanosine.

Gaffney BL, Jones RA.

Curr Protoc Nucleic Acid Chem. 2002 Nov;Chapter 1:Unit 1.6. doi: 10.1002/0471142700.nc0106s10.

PMID:
18428884
44.

Regioselective 2'-silylation of purine ribonucleosides for phosphoramidite RNA synthesis.

Gaffney BL, Jones RA.

Curr Protoc Nucleic Acid Chem. 2001 Nov;Chapter 2:Unit 2.8. doi: 10.1002/0471142700.nc0208s06.

PMID:
18428841
45.

Synthesis of AZTpSpCX2ppSA and AZTpSpCX2ppSAZT: hydrolysis-resistant potential inhibitors of the AZT excision reaction of HIV-1 RT.

Han Q, Sarafianos SG, Arnold E, Parniak MA, Gaffney BL, Jones RA.

Org Lett. 2007 Dec 6;9(25):5243-6. Epub 2007 Nov 8.

PMID:
17988141
46.
47.

Anesthesia, analgesia, and euphoria.

Gaffney BJ.

Biophys J. 2007 Jan 1;92(1):1-2. Epub 2006 Oct 6. No abstract available.

48.

Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3.

Youn B, Sellhorn GE, Mirchel RJ, Gaffney BJ, Grimes HD, Kang C.

Proteins. 2006 Dec 1;65(4):1008-20.

49.

Polymorphism of the signaling molecule c-di-GMP.

Zhang Z, Kim S, Gaffney BL, Jones RA.

J Am Chem Soc. 2006 May 31;128(21):7015-24.

50.

One-flask synthesis of dinucleoside tetra- and pentaphosphates.

Han Q, Gaffney BL, Jones RA.

Org Lett. 2006 May 11;8(10):2075-7.

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