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Best matches for Gabaldón T[au]:

Candida parapsilosis: from Genes to the Bedside. Tóth R et al. Clin Microbiol Rev. (2019)

Genetically encodable bioluminescent system from fungi. Kotlobay AA et al. Proc Natl Acad Sci U S A. (2018)

Microbiome and colorectal cancer: Roles in carcinogenesis and clinical potential. Saus E et al. Mol Aspects Med. (2019)

Search results

Items: 1 to 50 of 197

1.

HaploTypo: a variant-calling pipeline for phased genomes.

Pegueroles C, Mixão V, Carreté L, Molina M, Gabaldón T.

Bioinformatics. 2019 Dec 13. pii: btz933. doi: 10.1093/bioinformatics/btz933. [Epub ahead of print]

PMID:
31834373
2.

Parental origin of the allotetraploid tobacco Nicotiana benthamiana.

Schiavinato M, Marcet-Houben M, Dohm JC, Gabaldón T, Himmelbauer H.

Plant J. 2019 Dec 12. doi: 10.1111/tpj.14648. [Epub ahead of print]

PMID:
31833111
3.

Phylogenomics identifies an ancestral burst of gene duplications predating the diversification of aphidomorpha.

Julca I, Marcet-Houben M, Cruz F, Vargas-Chavez C, Johnston JS, Gómez-Garrido J, Frias L, Corvelo A, Loska D, Cámara F, Gut M, Alioto T, Latorre A, Gabaldón T.

Mol Biol Evol. 2019 Nov 8. pii: msz261. doi: 10.1093/molbev/msz261. [Epub ahead of print]

PMID:
31702774
4.

A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits.

Zhao G, Lian Q, Zhang Z, Fu Q, He Y, Ma S, Ruggieri V, Monforte AJ, Wang P, Julca I, Wang H, Liu J, Xu Y, Wang R, Ji J, Xu Z, Kong W, Zhong Y, Shang J, Pereira L, Argyris J, Zhang J, Mayobre C, Pujol M, Oren E, Ou D, Wang J, Sun D, Zhao S, Zhu Y, Li N, Katzir N, Gur A, Dogimont C, Schaefer H, Fan W, Bendahmane A, Fei Z, Pitrat M, Gabaldón T, Lin T, Garcia-Mas J, Xu Y, Huang S.

Nat Genet. 2019 Nov;51(11):1607-1615. doi: 10.1038/s41588-019-0522-8. Epub 2019 Nov 1.

PMID:
31676864
5.

Fungal evolution: diversity, taxonomy and phylogeny of the Fungi.

Naranjo-Ortiz MA, Gabaldón T.

Biol Rev Camb Philos Soc. 2019 Dec;94(6):2101-2137. doi: 10.1111/brv.12550.

6.

Molecular Typing of Candida glabrata.

Gabaldón T, Gómez-Molero E, Bader O.

Mycopathologia. 2019 Oct 15. doi: 10.1007/s11046-019-00388-x. [Epub ahead of print] Review.

PMID:
31617105
7.

Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes.

Lütkenhaus R, Traeger S, Breuer J, Carreté L, Kuo A, Lipzen A, Pangilinan J, Dilworth D, Sandor L, Pöggeler S, Gabaldón T, Barry K, Grigoriev IV, Nowrousian M.

Genetics. 2019 Dec;213(4):1545-1563. doi: 10.1534/genetics.119.302749. Epub 2019 Oct 11.

PMID:
31604798
8.

Genome Assemblies of Two Rare Opportunistic Yeast Pathogens: Diutina rugosa (syn. Candida rugosa) and Trichomonascus ciferrii (syn. Candida ciferrii).

Mixão V, Saus E, Hansen AP, Lass-Florl C, Gabaldón T.

G3 (Bethesda). 2019 Dec 3;9(12):3921-3927. doi: 10.1534/g3.119.400762.

9.

EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes.

Marcet-Houben M, Gabaldón T.

Bioinformatics. 2019 Sep 27. pii: btz706. doi: 10.1093/bioinformatics/btz706. [Epub ahead of print]

PMID:
31560365
10.

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence.

Alioto T, Alexiou KG, Bardil A, Barteri F, Castanera R, Cruz F, Dhingra A, Duval H, Fernández I Martí Á, Frias L, Galán B, García JL, Howad W, Gómez-Garrido J, Gut M, Julca I, Morata J, Puigdomènech P, Ribeca P, Rubio Cabetas MJ, Vlasova A, Wirthensohn M, Garcia-Mas J, Gabaldón T, Casacuberta JM, Arús P.

Plant J. 2020 Jan;101(2):455-472. doi: 10.1111/tpj.14538. Epub 2019 Oct 22.

PMID:
31529539
11.

Evolutionary and functional patterns of shared gene neighbourhood in fungi.

Marcet-Houben M, Gabaldón T.

Nat Microbiol. 2019 Dec;4(12):2383-2392. doi: 10.1038/s41564-019-0552-0. Epub 2019 Sep 16.

PMID:
31527797
12.

Pochonia chlamydosporia Induces Plant-Dependent Systemic Resistance to Meloidogyne incognita.

Ghahremani Z, Escudero N, Saus E, Gabaldón T, Sorribas FJ.

Front Plant Sci. 2019 Aug 13;10:945. doi: 10.3389/fpls.2019.00945. eCollection 2019.

13.

CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies.

Hovhannisyan H, Hafez A, Llorens C, Gabaldón T.

Bioinformatics. 2019 Aug 8. pii: btz626. doi: 10.1093/bioinformatics/btz626. [Epub ahead of print]

PMID:
31392323
14.

Post-exercise hypotension and skeletal muscle oxygenation is regulated by nitrate-reducing activity of oral bacteria.

Cutler C, Kiernan M, Willis JR, Gallardo-Alfaro L, Casas-Agustench P, White D, Hickson M, Gabaldon T, Bescos R.

Free Radic Biol Med. 2019 Nov 1;143:252-259. doi: 10.1016/j.freeradbiomed.2019.07.035. Epub 2019 Jul 29.

PMID:
31369841
15.

Advances and Applications in the Quest for Orthologs.

Glover N, Dessimoz C, Ebersberger I, Forslund SK, Gabaldón T, Huerta-Cepas J, Martin MJ, Muffato M, Patricio M, Pereira C, da Silva AS, Wang Y, Sonnhammer E, Thomas PD.

Mol Biol Evol. 2019 Oct 1;36(10):2157-2164. doi: 10.1093/molbev/msz150.

16.

Skin microbiome modulation induced by probiotic solutions.

Paetzold B, Willis JR, Pereira de Lima J, Knödlseder N, Brüggemann H, Quist SR, Gabaldón T, Güell M.

Microbiome. 2019 Jun 24;7(1):95. doi: 10.1186/s40168-019-0709-3.

17.

Recent trends in molecular diagnostics of yeast infections: from PCR to NGS.

Consortium OPATHY , Gabaldón T.

FEMS Microbiol Rev. 2019 Sep 1;43(5):517-547. doi: 10.1093/femsre/fuz015.

PMID:
31158289
18.

Whole-Genome Sequencing of the Opportunistic Yeast Pathogen Candida inconspicua Uncovers Its Hybrid Origin.

Mixão V, Hansen AP, Saus E, Boekhout T, Lass-Florl C, Gabaldón T.

Front Genet. 2019 Apr 25;10:383. doi: 10.3389/fgene.2019.00383. eCollection 2019.

19.

Microbiome and colorectal cancer: Roles in carcinogenesis and clinical potential.

Saus E, Iraola-Guzmán S, Willis JR, Brunet-Vega A, Gabaldón T.

Mol Aspects Med. 2019 Oct;69:93-106. doi: 10.1016/j.mam.2019.05.001. Epub 2019 May 24. Review.

20.

Fungal evolution: major ecological adaptations and evolutionary transitions.

Naranjo-Ortiz MA, Gabaldón T.

Biol Rev Camb Philos Soc. 2019 Aug;94(4):1443-1476. doi: 10.1111/brv.12510. Epub 2019 Apr 25.

21.

Candida parapsilosis: from Genes to the Bedside.

Tóth R, Nosek J, Mora-Montes HM, Gabaldon T, Bliss JM, Nosanchuk JD, Turner SA, Butler G, Vágvölgyi C, Gácser A.

Clin Microbiol Rev. 2019 Feb 27;32(2). pii: e00111-18. doi: 10.1128/CMR.00111-18. Print 2019 Mar 20. Review.

PMID:
30814115
22.

Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations.

Carreté L, Ksiezopolska E, Gómez-Molero E, Angoulvant A, Bader O, Fairhead C, Gabaldón T.

Front Microbiol. 2019 Feb 12;10:112. doi: 10.3389/fmicb.2019.00112. eCollection 2019.

23.

Utilization of selenocysteine in early-branching fungal phyla.

Mariotti M, Salinas G, Gabaldón T, Gladyshev VN.

Nat Microbiol. 2019 May;4(5):759-765. doi: 10.1038/s41564-018-0354-9. Epub 2019 Feb 11.

24.

Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis.

Pegueroles C, Iraola-Guzmán S, Chorostecki U, Ksiezopolska E, Saus E, Gabaldón T.

RNA Biol. 2019 Mar;16(3):320-329. doi: 10.1080/15476286.2019.1572438. Epub 2019 Jan 31.

25.

Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes.

González-Torres P, Rodríguez-Mateos F, Antón J, Gabaldón T.

mBio. 2019 Jan 22;10(1). pii: e02494-18. doi: 10.1128/mBio.02494-18.

26.

Citizen science charts two major "stomatotypes" in the oral microbiome of adolescents and reveals links with habits and drinking water composition.

Willis JR, González-Torres P, Pittis AA, Bejarano LA, Cozzuto L, Andreu-Somavilla N, Alloza-Trabado M, Valentín A, Ksiezopolska E, Company C, Onywera H, Montfort M, Hermoso A, Iraola-Guzmán S, Saus E, Labeeuw A, Carolis C, Hecht J, Ponomarenko J, Gabaldón T.

Microbiome. 2018 Dec 6;6(1):218. doi: 10.1186/s40168-018-0592-3.

27.

Genetically encodable bioluminescent system from fungi.

Kotlobay AA, Sarkisyan KS, Mokrushina YA, Marcet-Houben M, Serebrovskaya EO, Markina NM, Gonzalez Somermeyer L, Gorokhovatsky AY, Vvedensky A, Purtov KV, Petushkov VN, Rodionova NS, Chepurnyh TV, Fakhranurova LI, Guglya EB, Ziganshin R, Tsarkova AS, Kaskova ZM, Shender V, Abakumov M, Abakumova TO, Povolotskaya IS, Eroshkin FM, Zaraisky AG, Mishin AS, Dolgov SV, Mitiouchkina TY, Kopantzev EP, Waldenmaier HE, Oliveira AG, Oba Y, Barsova E, Bogdanova EA, Gabaldón T, Stevani CV, Lukyanov S, Smirnov IV, Gitelson JI, Kondrashov FA, Yampolsky IV.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12728-12732. doi: 10.1073/pnas.1803615115. Epub 2018 Nov 26.

28.

Echinocandin-Induced Microevolution of Candida parapsilosis Influences Virulence and Abiotic Stress Tolerance.

Papp C, Kocsis K, Tóth R, Bodai L, Willis JR, Ksiezopolska E, Lozoya-Pérez NE, Vágvölgyi C, Mora Montes H, Gabaldón T, Nosanchuk JD, Gácser A.

mSphere. 2018 Nov 14;3(6). pii: e00547-18. doi: 10.1128/mSphere.00547-18.

29.

MICU1 Confers Protection from MCU-Dependent Manganese Toxicity.

Wettmarshausen J, Goh V, Huang KT, Arduino DM, Tripathi U, Leimpek A, Cheng Y, Pittis AA, Gabaldón T, Mokranjac D, Hajnóczky G, Perocchi F.

Cell Rep. 2018 Nov 6;25(6):1425-1435.e7. doi: 10.1016/j.celrep.2018.10.037.

30.

Evolution of the Peroxisomal Proteome.

Gabaldón T.

Subcell Biochem. 2018;89:221-233. doi: 10.1007/978-981-13-2233-4_9. Review.

PMID:
30378025
31.

Relative timing of mitochondrial endosymbiosis and the "pre-mitochondrial symbioses" hypothesis.

Gabaldón T.

IUBMB Life. 2018 Dec;70(12):1188-1196. doi: 10.1002/iub.1950. Epub 2018 Oct 25. Review.

32.

Evolutionary Emergence of Drug Resistance in Candida Opportunistic Pathogens.

Ksiezopolska E, Gabaldón T.

Genes (Basel). 2018 Sep 19;9(9). pii: E461. doi: 10.3390/genes9090461. Review.

33.

Transcriptome Sequencing Approaches to Elucidate Host-Microbe Interactions in Opportunistic Human Fungal Pathogens.

Hovhannisyan H, Gabaldón T.

Curr Top Microbiol Immunol. 2019;422:193-235. doi: 10.1007/82_2018_122. Review.

PMID:
30128828
34.

Genome Variation in the Model Halophilic Bacterium Salinibacter ruber.

González-Torres P, Gabaldón T.

Front Microbiol. 2018 Jul 19;9:1499. doi: 10.3389/fmicb.2018.01499. eCollection 2018.

35.

Eicosanoid biosynthesis influences the virulence of Candida parapsilosis.

Chakraborty T, Thuer E, Heijink M, Tóth R, Bodai L, Vágvölgyi C, Giera M, Gabaldón T, Gácser A.

Virulence. 2018;9(1):1019-1035. doi: 10.1080/21505594.2018.1475797.

36.

Genomes shed light on the secret life of Candida glabrata: not so asexual, not so commensal.

Gabaldón T, Fairhead C.

Curr Genet. 2019 Feb;65(1):93-98. doi: 10.1007/s00294-018-0867-z. Epub 2018 Jul 19. Review.

37.

Gene flow contributes to diversification of the major fungal pathogen Candida albicans.

Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, Battail C, Wincker P, Borman AM, Chowdhary A, Fan S, Kim SH, Le Pape P, Romeo O, Shin JH, Gabaldon T, Sherlock G, Bougnoux ME, d'Enfert C.

Nat Commun. 2018 Jun 8;9(1):2253. doi: 10.1038/s41467-018-04787-4.

38.

Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis.

Muntané G, Farré X, Rodríguez JA, Pegueroles C, Hughes DA, de Magalhães JP, Gabaldón T, Navarro A.

Mol Biol Evol. 2018 Aug 1;35(8):1990-2004. doi: 10.1093/molbev/msy105.

39.

Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication.

Legras JL, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marcet-Houben M, Gabaldon T, Schuller D, Sampaio JP, Dequin S.

Mol Biol Evol. 2018 Jul 1;35(7):1712-1727. doi: 10.1093/molbev/msy066.

40.

Genome Sequence of the Brown Rot Fungal Pathogen Monilinia laxa.

Naranjo-Ortíz MA, Rodríguez-Píres S, Torres R, De Cal A, Usall J, Gabaldón T.

Genome Announc. 2018 Apr 26;6(17). pii: e00214-18. doi: 10.1128/genomeA.00214-18.

41.

Phylogenomics of the olive tree (Olea europaea) reveals the relative contribution of ancient allo- and autopolyploidization events.

Julca I, Marcet-Houben M, Vargas P, Gabaldón T.

BMC Biol. 2018 Jan 25;16(1):15. doi: 10.1186/s12915-018-0482-y.

42.

Investigation of Candida parapsilosis virulence regulatory factors during host-pathogen interaction.

Tóth R, Cabral V, Thuer E, Bohner F, Németh T, Papp C, Nimrichter L, Molnár G, Vágvölgyi C, Gabaldón T, Nosanchuk JD, Gácser A.

Sci Rep. 2018 Jan 22;8(1):1346. doi: 10.1038/s41598-018-19453-4.

43.

nextPARS: parallel probing of RNA structures in Illumina.

Saus E, Willis JR, Pryszcz LP, Hafez A, Llorens C, Himmelbauer H, Gabaldón T.

RNA. 2018 Apr;24(4):609-619. doi: 10.1261/rna.063073.117. Epub 2018 Jan 22.

44.

Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications.

Stavrou AA, Mixão V, Boekhout T, Gabaldón T.

Yeast. 2018 Jun;35(6):425-429. doi: 10.1002/yea.3303. Epub 2018 Feb 22.

45.

Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans.

Carreté L, Ksiezopolska E, Pegueroles C, Gómez-Molero E, Saus E, Iraola-Guzmán S, Loska D, Bader O, Fairhead C, Gabaldón T.

Curr Biol. 2018 Jan 8;28(1):15-27.e7. doi: 10.1016/j.cub.2017.11.027. Epub 2017 Dec 14.

46.

Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes.

Villamor J, Ramos-Barbero MD, González-Torres P, Gabaldón T, Rosselló-Móra R, Meseguer I, Martínez-García M, Santos F, Antón J.

ISME J. 2018 Feb;12(2):424-437. doi: 10.1038/ismej.2017.175. Epub 2017 Nov 3.

47.

Gearing up to handle the mosaic nature of life in the quest for orthologs.

Forslund K, Pereira C, Capella-Gutierrez S, da Silva AS, Altenhoff A, Huerta-Cepas J, Muffato M, Patricio M, Vandepoele K, Ebersberger I, Blake J, Fernández Breis JT; Quest for Orthologs Consortium, Boeckmann B, Gabaldón T, Sonnhammer E, Dessimoz C, Lewis S; Quest for Orthologs Consortium .

Bioinformatics. 2018 Jan 15;34(2):323-329. doi: 10.1093/bioinformatics/btx542.

48.

Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum.

Bravo-Ruiz G, Sassi AH, Marcet-Houben M, Di Pietro A, Gargouri A, Gabaldon T, Roncero MIG.

Front Microbiol. 2017 Sep 8;8:1627. doi: 10.3389/fmicb.2017.01627. eCollection 2017.

49.

Distinct roles of the polarity factors Boi1 and Boi2 in the control of exocytosis and abscission in budding yeast.

Masgrau A, Battola A, Sanmartin T, Pryszcz LP, Gabaldón T, Mendoza M.

Mol Biol Cell. 2017 Nov 1;28(22):3082-3094. doi: 10.1091/mbc.E17-06-0404. Epub 2017 Sep 13.

50.

Eukaryotic transporters for hydroxyderivatives of benzoic acid.

Cillingová A, Zeman I, Tóth R, Neboháčová M, Dunčková I, Hölcová M, Jakúbková M, Gérecová G, Pryszcz LP, Tomáška Ľ, Gabaldón T, Gácser A, Nosek J.

Sci Rep. 2017 Aug 21;7(1):8998. doi: 10.1038/s41598-017-09408-6.

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