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Items: 22

1.

SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements.

Do DV, Strauss B, Cukuroglu E, Macaulay I, Wee KB, Hu TX, Igor RLM, Lee C, Harrison A, Butler R, Dietmann S, Jernej U, Marioni J, Smith CWJ, Göke J, Surani MA.

Cell Discov. 2018 Jun 19;4:33. doi: 10.1038/s41421-018-0032-3. eCollection 2018.

2.

EZH2 promotes neoplastic transformation through VAV interaction-dependent extranuclear mechanisms.

Venkatesan N, Wong JF, Tan KP, Chung HH, Yau YH, Cukuroglu E, Allahverdi A, Nordenskiöld L, Göke J, Geifman-Shochat S, Lin VCL, Madhusudhan MS, Su IH.

Oncogene. 2018 Jan 25;37(4):461-477. doi: 10.1038/onc.2017.309. Epub 2017 Oct 2.

PMID:
28967906
3.

Disrupting Interactions Between β-Catenin and Activating TCFs Reconstitutes Ground State Pluripotency in Mouse Embryonic Stem Cells.

Saj A, Chatterjee SS, Zhu B, Cukuroglu E, Gocha T, Zhang X, Göke J, DasGupta R.

Stem Cells. 2017 Aug;35(8):1924-1933. doi: 10.1002/stem.2647. Epub 2017 Jun 15.

4.

Predicting gene expression in massively parallel reporter assays: A comparative study.

Kreimer A, Zeng H, Edwards MD, Guo Y, Tian K, Shin S, Welch R, Wainberg M, Mohan R, Sinnott-Armstrong NA, Li Y, Eraslan G, Amin TB, Tewhey R, Sabeti PC, Goke J, Mueller NS, Kellis M, Kundaje A, Beer MA, Keles S, Gifford DK, Yosef N.

Hum Mutat. 2017 Sep;38(9):1240-1250. doi: 10.1002/humu.23197. Epub 2017 Mar 9.

5.

Midbrain-like Organoids from Human Pluripotent Stem Cells Contain Functional Dopaminergic and Neuromelanin-Producing Neurons.

Jo J, Xiao Y, Sun AX, Cukuroglu E, Tran HD, Göke J, Tan ZY, Saw TY, Tan CP, Lokman H, Lee Y, Kim D, Ko HS, Kim SO, Park JH, Cho NJ, Hyde TM, Kleinman JE, Shin JH, Weinberger DR, Tan EK, Je HS, Ng HH.

Cell Stem Cell. 2016 Aug 4;19(2):248-257. doi: 10.1016/j.stem.2016.07.005. Epub 2016 Jul 28.

6.

CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome.

Göke J, Ng HH.

EMBO Rep. 2016 Aug;17(8):1131-44. doi: 10.15252/embr.201642743. Epub 2016 Jul 11. Review.

7.

Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells.

Itahana Y, Zhang J, Göke J, Vardy LA, Han R, Iwamoto K, Cukuroglu E, Robson P, Pouladi MA, Colman A, Itahana K.

Sci Rep. 2016 Jun 27;6:28112. doi: 10.1038/srep28112.

8.

Molecular Features Underlying Neurodegeneration Identified through In Vitro Modeling of Genetically Diverse Parkinson's Disease Patients.

Lin L, Göke J, Cukuroglu E, Dranias MR, VanDongen AM, Stanton LW.

Cell Rep. 2016 Jun 14;15(11):2411-26. doi: 10.1016/j.celrep.2016.05.022. Epub 2016 Jun 2.

9.

Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells.

Göke J, Lu X, Chan YS, Ng HH, Ly LH, Sachs F, Szczerbinska I.

Cell Stem Cell. 2015 Feb 5;16(2):135-41. doi: 10.1016/j.stem.2015.01.005.

10.

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes.

Hu H, Haas SA, Chelly J, Van Esch H, Raynaud M, de Brouwer AP, Weinert S, Froyen G, Frints SG, Laumonnier F, Zemojtel T, Love MI, Richard H, Emde AK, Bienek M, Jensen C, Hambrock M, Fischer U, Langnick C, Feldkamp M, Wissink-Lindhout W, Lebrun N, Castelnau L, Rucci J, Montjean R, Dorseuil O, Billuart P, Stuhlmann T, Shaw M, Corbett MA, Gardner A, Willis-Owen S, Tan C, Friend KL, Belet S, van Roozendaal KE, Jimenez-Pocquet M, Moizard MP, Ronce N, Sun R, O'Keeffe S, Chenna R, van Bömmel A, Göke J, Hackett A, Field M, Christie L, Boyle J, Haan E, Nelson J, Turner G, Baynam G, Gillessen-Kaesbach G, Müller U, Steinberger D, Budny B, Badura-Stronka M, Latos-Bieleńska A, Ousager LB, Wieacker P, Rodríguez Criado G, Bondeson ML, Annerén G, Dufke A, Cohen M, Van Maldergem L, Vincent-Delorme C, Echenne B, Simon-Bouy B, Kleefstra T, Willemsen M, Fryns JP, Devriendt K, Ullmann R, Vingron M, Wrogemann K, Wienker TF, Tzschach A, van Bokhoven H, Gecz J, Jentsch TJ, Chen W, Ropers HH, Kalscheuer VM.

Mol Psychiatry. 2016 Jan;21(1):133-48. doi: 10.1038/mp.2014.193. Epub 2015 Feb 3.

11.

Klf2 is an essential factor that sustains ground state pluripotency.

Yeo JC, Jiang J, Tan ZY, Yim GR, Ng JH, Göke J, Kraus P, Liang H, Gonzales KA, Chong HC, Tan CP, Lim YS, Tan NS, Lufkin T, Ng HH.

Cell Stem Cell. 2014 Jun 5;14(6):864-72. doi: 10.1016/j.stem.2014.04.015.

12.

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity.

Lu X, Sachs F, Ramsay L, Jacques PÉ, Göke J, Bourque G, Ng HH.

Nat Struct Mol Biol. 2014 Apr;21(4):423-5. doi: 10.1038/nsmb.2799. Epub 2014 Mar 30.

PMID:
24681886
13.

Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

Chan YS, Göke J, Ng JH, Lu X, Gonzales KA, Tan CP, Tng WQ, Hong ZZ, Lim YS, Ng HH.

Cell Stem Cell. 2013 Dec 5;13(6):663-75. doi: 10.1016/j.stem.2013.11.015.

14.

SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells.

Lu X, Göke J, Sachs F, Jacques PÉ, Liang H, Feng B, Bourque G, Bubulya PA, Ng HH.

Nat Cell Biol. 2013 Oct;15(10):1141-1152. doi: 10.1038/ncb2839. Epub 2013 Sep 8.

15.

Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells.

Göke J, Chan YS, Yan J, Vingron M, Ng HH.

Mol Cell. 2013 Jun 27;50(6):844-55. doi: 10.1016/j.molcel.2013.04.030. Epub 2013 May 30.

16.

Reduced Oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by Oct4 and Nanog.

Karwacki-Neisius V, Göke J, Osorno R, Halbritter F, Ng JH, Weiße AY, Wong FC, Gagliardi A, Mullin NP, Festuccia N, Colby D, Tomlinson SR, Ng HH, Chambers I.

Cell Stem Cell. 2013 May 2;12(5):531-45. doi: 10.1016/j.stem.2013.04.023.

17.

A PRC2-dependent repressive role of PRDM14 in human embryonic stem cells and induced pluripotent stem cell reprogramming.

Chan YS, Göke J, Lu X, Venkatesan N, Feng B, Su IH, Ng HH.

Stem Cells. 2013 Apr;31(4):682-92. doi: 10.1002/stem.1307.

18.

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.

Göke J, Schulz MH, Lasserre J, Vingron M.

Bioinformatics. 2012 Mar 1;28(5):656-63. doi: 10.1093/bioinformatics/bts028. Epub 2012 Jan 12.

19.

Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development.

Göke J, Jung M, Behrens S, Chavez L, O'Keeffe S, Timmermann B, Lehrach H, Adjaye J, Vingron M.

PLoS Comput Biol. 2011 Dec;7(12):e1002304. doi: 10.1371/journal.pcbi.1002304. Epub 2011 Dec 22.

20.

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.

McMurdie PJ, Behrens SF, Müller JA, Göke J, Ritalahti KM, Wagner R, Goltsman E, Lapidus A, Holmes S, Löffler FE, Spormann AM.

PLoS Genet. 2009 Nov;5(11):e1000714. doi: 10.1371/journal.pgen.1000714. Epub 2009 Nov 6.

21.

A Bayesian approach to copy-number-polymorphism analysis in nuclear pedigrees.

Kosta K, Sabroe I, Goke J, Nibbs RJ, Tsanakas J, Whyte MK, Teare MD.

Am J Hum Genet. 2007 Oct;81(4):808-12. Epub 2007 Aug 8.

22.

Simulation of different applicator positions for treatment of a presacral tumour.

Gellermann J, Göke J, Figiel R, Weihrauch M, Cho CH, Budach V, Felix R, Wust P.

Int J Hyperthermia. 2007 Feb;23(1):37-47.

PMID:
17575722

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