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Best matches for Gómez SM[au]:

Unexplored therapeutic opportunities in the human genome. Oprea TI et al. Nat Rev Drug Discov. (2018)

Unexplored therapeutic opportunities in the human genome. Oprea TI et al. Nat Rev Drug Discov. (2018)

MAP3K4 Controls the Chromatin Modifier HDAC6 during Trophoblast Stem Cell Epithelial-to-Mesenchymal Transition. Mobley RJ et al. Cell Rep. (2017)

Search results

Items: 1 to 50 of 72

1.

Recombination drives the evolution of mutational robustness.

Singhal S, Gomez SM, Burch CL.

Curr Opin Syst Biol. 2019 Feb;13:142-149. doi: 10.1016/j.coisb.2018.12.003. Epub 2019 Jan 2.

PMID:
31572829
2.

Coral: Clear and Customizable Visualization of Human Kinome Data.

Metz KS, Deoudes EM, Berginski ME, Jimenez-Ruiz I, Aksoy BA, Hammerbacher J, Gomez SM, Phanstiel DH.

Cell Syst. 2018 Sep 26;7(3):347-350.e1. doi: 10.1016/j.cels.2018.07.001. Epub 2018 Aug 29.

3.

Fungal infections in hematopoietic stem cell transplantation in children at a pediatric children's hospital in Argentina.

Gomez SM, Caniza M, Fynn A, Vescina C, Ruiz CD, Iglesias D, Sosa F, Sung L.

Transpl Infect Dis. 2018 Aug;20(4):e12913. doi: 10.1111/tid.12913. Epub 2018 May 14.

PMID:
29679436
4.

Proteomic analysis defines kinase taxonomies specific for subtypes of breast cancer.

Collins KAL, Stuhlmiller TJ, Zawistowski JS, East MP, Pham TT, Hall CR, Goulet DR, Bevill SM, Angus SP, Velarde SH, Sciaky N, Oprea TI, Graves LM, Johnson GL, Gomez SM.

Oncotarget. 2018 Jan 29;9(21):15480-15497. doi: 10.18632/oncotarget.24337. eCollection 2018 Mar 20.

5.

Unexplored therapeutic opportunities in the human genome.

Oprea TI, Bologa CG, Brunak S, Campbell A, Gan GN, Gaulton A, Gomez SM, Guha R, Hersey A, Holmes J, Jadhav A, Jensen LJ, Johnson GL, Karlson A, Leach AR, Ma'ayan A, Malovannaya A, Mani S, Mathias SL, McManus MT, Meehan TF, von Mering C, Muthas D, Nguyen DT, Overington JP, Papadatos G, Qin J, Reich C, Roth BL, Schürer SC, Simeonov A, Sklar LA, Southall N, Tomita S, Tudose I, Ursu O, Vidovic D, Waller A, Westergaard D, Yang JJ, Zahoránszky-Köhalmi G.

Nat Rev Drug Discov. 2018 May;17(5):377. doi: 10.1038/nrd.2018.52. Epub 2018 Mar 23.

PMID:
29567993
6.

Unexplored therapeutic opportunities in the human genome.

Oprea TI, Bologa CG, Brunak S, Campbell A, Gan GN, Gaulton A, Gomez SM, Guha R, Hersey A, Holmes J, Jadhav A, Jensen LJ, Johnson GL, Karlson A, Leach AR, Ma'ayan A, Malovannaya A, Mani S, Mathias SL, McManus MT, Meehan TF, von Mering C, Muthas D, Nguyen DT, Overington JP, Papadatos G, Qin J, Reich C, Roth BL, Schürer SC, Simeonov A, Sklar LA, Southall N, Tomita S, Tudose I, Ursu O, Vidovic D, Waller A, Westergaard D, Yang JJ, Zahoránszky-Köhalmi G.

Nat Rev Drug Discov. 2018 May;17(5):317-332. doi: 10.1038/nrd.2018.14. Epub 2018 Mar 23. Review. Erratum in: Nat Rev Drug Discov. 2018 Mar 23;:.

7.

Spatiotemporal organization of exocytosis emerges during neuronal shape change.

Urbina FL, Gomez SM, Gupton SL.

J Cell Biol. 2018 Mar 5;217(3):1113-1128. doi: 10.1083/jcb.201709064. Epub 2018 Jan 19.

8.

Erratum for Perkowski et al., "The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection".

Perkowski EF, Zulauf KE, Weerakoon D, Hayden JD, Ioerger TR, Oreper D, Gomez SM, Sacchettini JC, Braunstein M.

MBio. 2017 Jun 20;8(3). pii: e00872-17. doi: 10.1128/mBio.00872-17. No abstract available.

9.

The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection.

Perkowski EF, Zulauf KE, Weerakoon D, Hayden JD, Ioerger TR, Oreper D, Gomez SM, Sacchettini JC, Braunstein M.

MBio. 2017 Apr 25;8(2). pii: e00333-17. doi: 10.1128/mBio.00333-17. Erratum in: MBio. 2017 Jun 20;8(3):.

10.

MAP3K4 Controls the Chromatin Modifier HDAC6 during Trophoblast Stem Cell Epithelial-to-Mesenchymal Transition.

Mobley RJ, Raghu D, Duke LD, Abell-Hart K, Zawistowski JS, Lutz K, Gomez SM, Roy S, Homayouni R, Johnson GL, Abell AN.

Cell Rep. 2017 Mar 7;18(10):2387-2400. doi: 10.1016/j.celrep.2017.02.030.

11.

Mapping Consistent Rice (Oryza sativa L.) Yield QTLs under Drought Stress in Target Rainfed Environments.

Prince SJ, Beena R, Gomez SM, Senthivel S, Babu RC.

Rice (N Y). 2015 Dec;8(1):53. doi: 10.1186/s12284-015-0053-6. Epub 2015 Jul 24.

12.

Two functionally distinct sources of actin monomers supply the leading edge of lamellipodia.

Vitriol EA, McMillen LM, Kapustina M, Gomez SM, Vavylonis D, Zheng JQ.

Cell Rep. 2015 Apr 21;11(3):433-45. doi: 10.1016/j.celrep.2015.03.033. Epub 2015 Apr 10.

13.

Inhibition of Lapatinib-Induced Kinome Reprogramming in ERBB2-Positive Breast Cancer by Targeting BET Family Bromodomains.

Stuhlmiller TJ, Miller SM, Zawistowski JS, Nakamura K, Beltran AS, Duncan JS, Angus SP, Collins KA, Granger DA, Reuther RA, Graves LM, Gomez SM, Kuan PF, Parker JS, Chen X, Sciaky N, Carey LA, Earp HS, Jin J, Johnson GL.

Cell Rep. 2015 Apr 21;11(3):390-404. doi: 10.1016/j.celrep.2015.03.037. Epub 2015 Apr 9.

14.

Transcriptome-wide identification and study of cancer-specific splicing events across multiple tumors.

Tsai YS, Dominguez D, Gomez SM, Wang Z.

Oncotarget. 2015 Mar 30;6(9):6825-39.

15.

Successful treatment of hemophagocytic lymphohistiocytosis and disseminated intravascular coagulation secondary to histoplasmosis in a patient with HIV/AIDS.

Nieto JF, Gómez SM, Moncada DC, Serna LM, Hidrón AI.

Biomedica. 2016 Apr 1;36(0):9-14. doi: 10.7705/biomedica.v36i2.2797.

16.

LKB1 loss in melanoma disrupts directional migration toward extracellular matrix cues.

Chan KT, Asokan SB, King SJ, Bo T, Dubose ES, Liu W, Berginski ME, Simon JM, Davis IJ, Gomez SM, Sharpless NE, Bear JE.

J Cell Biol. 2014 Oct 27;207(2):299-315. doi: 10.1083/jcb.201404067.

17.

Engineered kinase activation reveals unique morphodynamic phenotypes and associated trafficking for Src family isoforms.

Chu PH, Tsygankov D, Berginski ME, Dagliyan O, Gomez SM, Elston TC, Karginov AV, Hahn KM.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12420-5. doi: 10.1073/pnas.1404487111. Epub 2014 Aug 12.

18.

Automated analysis of invadopodia dynamics in live cells.

Berginski ME, Creed SJ, Cochran S, Roadcap DW, Bear JE, Gomez SM.

PeerJ. 2014 Jul 1;2:e462. doi: 10.7717/peerj.462. eCollection 2014.

19.

Prevalent RNA recognition motif duplication in the human genome.

Tsai YS, Gomez SM, Wang Z.

RNA. 2014 May;20(5):702-12. doi: 10.1261/rna.044081.113. Epub 2014 Mar 25.

20.

The Focal Adhesion Analysis Server: a web tool for analyzing focal adhesion dynamics.

Berginski ME, Gomez SM.

F1000Res. 2013 Mar 4;2:68. doi: 10.12688/f1000research.2-68.v1. eCollection 2013.

21.

Nck enables directional cell migration through the coordination of polarized membrane protrusion with adhesion dynamics.

Chaki SP, Barhoumi R, Berginski ME, Sreenivasappa H, Trache A, Gomez SM, Rivera GM.

J Cell Sci. 2013 Apr 1;126(Pt 7):1637-49. doi: 10.1242/jcs.119610. Epub 2013 Feb 26.

22.

Gleevec, an Abl family inhibitor, produces a profound change in cell shape and migration.

Chen Z, Lessey E, Berginski ME, Cao L, Li J, Trepat X, Itano M, Gomez SM, Kapustina M, Huang C, Burridge K, Truskey G, Jacobson K.

PLoS One. 2013;8(1):e52233. doi: 10.1371/journal.pone.0052233. Epub 2013 Jan 2.

23.

Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer.

Duncan JS, Whittle MC, Nakamura K, Abell AN, Midland AA, Zawistowski JS, Johnson NL, Granger DA, Jordan NV, Darr DB, Usary J, Kuan PF, Smalley DM, Major B, He X, Hoadley KA, Zhou B, Sharpless NE, Perou CM, Kim WY, Gomez SM, Chen X, Jin J, Frye SV, Earp HS, Graves LM, Johnson GL.

Cell. 2012 Apr 13;149(2):307-21. doi: 10.1016/j.cell.2012.02.053.

24.

Arp2/3 is critical for lamellipodia and response to extracellular matrix cues but is dispensable for chemotaxis.

Wu C, Asokan SB, Berginski ME, Haynes EM, Sharpless NE, Griffith JD, Gomez SM, Bear JE.

Cell. 2012 Mar 2;148(5):973-87. doi: 10.1016/j.cell.2011.12.034.

25.

Defining the expressed breast cancer kinome.

Midland AA, Whittle MC, Duncan JS, Abell AN, Nakamura K, Zawistowski JS, Carey LA, Earp HS 3rd, Graves LM, Gomez SM, Johnson GL.

Cell Res. 2012 Apr;22(4):620-3. doi: 10.1038/cr.2012.25. Epub 2012 Feb 7. No abstract available.

26.

A whole-body model for glycogen regulation reveals a critical role for substrate cycling in maintaining blood glucose homeostasis.

Xu K, Morgan KT, Todd Gehris A, Elston TC, Gomez SM.

PLoS Comput Biol. 2011 Dec;7(12):e1002272. doi: 10.1371/journal.pcbi.1002272. Epub 2011 Dec 1.

27.

High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells.

Berginski ME, Vitriol EA, Hahn KM, Gomez SM.

PLoS One. 2011;6(7):e22025. doi: 10.1371/journal.pone.0022025. Epub 2011 Jul 14.

28.

MAP3K4/CBP-regulated H2B acetylation controls epithelial-mesenchymal transition in trophoblast stem cells.

Abell AN, Jordan NV, Huang W, Prat A, Midland AA, Johnson NL, Granger DA, Mieczkowski PA, Perou CM, Gomez SM, Li L, Johnson GL.

Cell Stem Cell. 2011 May 6;8(5):525-37. doi: 10.1016/j.stem.2011.03.008.

29.

Mapping protein interactions between Dengue virus and its human and insect hosts.

Doolittle JM, Gomez SM.

PLoS Negl Trop Dis. 2011 Feb 15;5(2):e954. doi: 10.1371/journal.pntd.0000954.

30.

Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens.

Doolittle JM, Gomez SM.

Virol J. 2010 Apr 28;7:82. doi: 10.1186/1743-422X-7-82.

31.

Enhancing metabolomic data analysis with Progressive Consensus Alignment of NMR Spectra (PCANS).

Staab JM, O'Connell TM, Gomez SM.

BMC Bioinformatics. 2010 Mar 9;11:123. doi: 10.1186/1471-2105-11-123.

32.

Comparison of phylogenetic trees through alignment of embedded evolutionary distances.

Choi K, Gomez SM.

BMC Bioinformatics. 2009 Dec 15;10:423. doi: 10.1186/1471-2105-10-423.

33.

Sequence patches on MAPK surfaces define protein-protein interactions.

Johnson GL, Gomez SM.

Genome Biol. 2009;10(6):222. doi: 10.1186/gb-2009-10-6-222. Epub 2009 Jun 5. Review.

34.

Hydroponics on a chip: analysis of the Fe deficient Arabidopsis thylakoid membrane proteome.

Laganowsky A, Gómez SM, Whitelegge JP, Nishio JN.

J Proteomics. 2009 Apr 13;72(3):397-415.

PMID:
19367733
35.

Prediction of protein-protein interaction networks.

Gomez SM, Choi K, Wu Y.

Curr Protoc Bioinformatics. 2008 Jun;Chapter 8:Unit 8.2. doi: 10.1002/0471250953.bi0802s22. Review.

PMID:
18551416
36.

Data-driven modeling of cellular stimulation, signaling and output response in RAW 264.7 cells.

Wu Y, Johnson GL, Gomez SM.

J Mol Signal. 2008 May 22;3:11. doi: 10.1186/1750-2187-3-11.

37.

Prediction of protein-protein interaction networks.

Gomez SM.

Curr Protoc Bioinformatics. 2003 May;Chapter 8:Unit8.2. doi: 10.1002/0471250953.bi0802s01. Review.

PMID:
18428709
38.

Effects of CO2 on the resuscitation of Listeria monocytogenes injured by various bactericidal treatments.

Van Houteghem N, Devlieghere F, Rajkovic A, Gómez SM, Uyttendaele M, Debevere J.

Int J Food Microbiol. 2008 Mar 31;123(1-2):67-73. doi: 10.1016/j.ijfoodmicro.2007.12.002. Epub 2007 Dec 23.

PMID:
18230409
39.

SAGE analysis of mosquito salivary gland transcriptomes during Plasmodium invasion.

Rosinski-Chupin I, Briolay J, Brouilly P, Perrot S, Gomez SM, Chertemps T, Roth CW, Keime C, Gandrillon O, Couble P, Brey PT.

Cell Microbiol. 2007 Mar;9(3):708-24. Epub 2006 Oct 18.

PMID:
17054438
40.

[Sensitivity profile of a panel of cell lines designed for the evaluation of in vitro cytotoxicity].

León CJ, Gómez SM, Morantes SJ, Cordero CP, Aristizábal FA.

Biomedica. 2006 Mar;26(1):161-8. Spanish.

PMID:
16929914
41.

Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms.

Li J, Riehle MM, Zhang Y, Xu J, Oduol F, Gomez SM, Eiglmeier K, Ueberheide BM, Shabanowitz J, Hunt DF, Ribeiro JM, Vernick KD.

Genome Biol. 2006;7(3):R24. Epub 2006 Mar 27.

42.

Tongue coating and tongue brushing: a literature review.

Danser MM, Gómez SM, Van der Weijden GA.

Int J Dent Hyg. 2003 Aug;1(3):151-8. Review.

PMID:
16451515
43.

Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones.

Gomez SM, Eiglmeier K, Segurens B, Dehoux P, Couloux A, Scarpelli C, Wincker P, Weissenbach J, Brey PT, Roth CW.

Genome Biol. 2005;6(4):R39. Epub 2005 Mar 15.

44.

The genomic sequence of the accidental pathogen Legionella pneumophila.

Chien M, Morozova I, Shi S, Sheng H, Chen J, Gomez SM, Asamani G, Hill K, Nuara J, Feder M, Rineer J, Greenberg JJ, Steshenko V, Park SH, Zhao B, Teplitskaya E, Edwards JR, Pampou S, Georghiou A, Chou IC, Iannuccilli W, Ulz ME, Kim DH, Geringer-Sameth A, Goldsberry C, Morozov P, Fischer SG, Segal G, Qu X, Rzhetsky A, Zhang P, Cayanis E, De Jong PJ, Ju J, Kalachikov S, Shuman HA, Russo JJ.

Science. 2004 Sep 24;305(5692):1966-8.

45.

Subtle modification of isotope ratio proteomics; an integrated strategy for expression proteomics.

Whitelegge JP, Katz JE, Pihakari KA, Hale R, Aguilera R, Gómez SM, Faull KF, Vavilin D, Vermaas W.

Phytochemistry. 2004 Jun;65(11):1507-15.

PMID:
15276448
46.

[Spatio-temporal variability in the transmission of dengue in Buenos Aires City].

Carbajo AE, Gómez SM, Curto SI, Schweigmann NJ.

Medicina (B Aires). 2004;64(3):231-4. Spanish.

PMID:
15239537
47.

Outcome and complications associated with treatment of pemphigus foliaceus in dogs: 43 cases (1994-2000).

Gomez SM, Morris DO, Rosenbaum MR, Goldschmidt MH.

J Am Vet Med Assoc. 2004 Apr 15;224(8):1312-6.

PMID:
15112781
48.

Learning to predict protein-protein interactions from protein sequences.

Gomez SM, Noble WS, Rzhetsky A.

Bioinformatics. 2003 Oct 12;19(15):1875-81.

PMID:
14555619
49.

Proteomics of membrane proteins.

Whitelegge JP, Gómez SM, Faull KF.

Adv Protein Chem. 2003;65:271-307. Review. No abstract available.

PMID:
12964373
50.

Transit peptide cleavage sites of integral thylakoid membrane proteins.

Gómez SM, Bil' KY, Aguilera R, Nishio JN, Faull KF, Whitelegge JP.

Mol Cell Proteomics. 2003 Oct;2(10):1068-85. Epub 2003 Aug 5.

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