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Items: 35

1.

Reflectin Proteins Bind and Reorganize Synthetic Phospholipid Vesicles.

Song J, Levenson R, Santos J, Velazquez L, Zhang F, Fygenson DK, Wu W, Morse DE.

Langmuir. 2020 Feb 25. doi: 10.1021/acs.langmuir.9b03632. [Epub ahead of print]

PMID:
32097553
2.

DNA Nunchucks: Nanoinstrumentation for Single-Molecule Measurement of Stiffness and Bending.

Cai X, Arias DS, Velazquez LR, Vexler S, Bevier AL, Fygenson DK.

Nano Lett. 2020 Feb 12;20(2):1388-1395. doi: 10.1021/acs.nanolett.9b04980. Epub 2020 Jan 9.

PMID:
31872766
3.

Increasing valence pushes DNA nanostar networks to the isostatic point.

Conrad N, Kennedy T, Fygenson DK, Saleh OA.

Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7238-7243. doi: 10.1073/pnas.1819683116. Epub 2019 Mar 26.

4.

Salt-dependent properties of a coacervate-like, self-assembled DNA liquid.

Jeon BJ, Nguyen DT, Abraham GR, Conrad N, Fygenson DK, Saleh OA.

Soft Matter. 2018 Aug 29;14(34):7009-7015. doi: 10.1039/c8sm01085d.

PMID:
30109341
5.

DNA-Stabilized Silver Nanoclusters as Specific, Ratiometric Fluorescent Dopamine Sensors.

Del Bonis-O'Donnell JT, Thakrar A, Hirschberg JW, Vong D, Queenan BN, Fygenson DK, Pennathur S.

ACS Chem Neurosci. 2018 Apr 18;9(4):849-857. doi: 10.1021/acschemneuro.7b00444. Epub 2018 Jan 9.

PMID:
29254331
6.

Self-assembly of precisely defined DNA nanotube superstructures using DNA origami seeds.

Mohammed AM, Velazquez L, Chisenhall A, Schiffels D, Fygenson DK, Schulman R.

Nanoscale. 2017 Jan 5;9(2):522-526. doi: 10.1039/c6nr06983e.

7.

A universal design for a DNA probe providing ratiometric fluorescence detection by generation of silver nanoclusters.

Del Bonis-O'Donnell JT, Vong D, Pennathur S, Fygenson DK.

Nanoscale. 2016 Aug 14;8(30):14489-96. doi: 10.1039/c6nr03827a. Epub 2016 Jul 13.

8.

Electrostatics and depletion determine competition between 2D nematic and 3D bundled phases of rod-like DNA nanotubes.

Park CY, Fygenson DK, Saleh OA.

Soft Matter. 2016 Jun 21;12(23):5089-95. doi: 10.1039/c6sm00222f. Epub 2016 Apr 29.

9.

Changes in Spectra and Conformation of Hairpin DNA-Stabilized Silver Nanoclusters Induced by Stem Sequence Perturbations.

Del Bonis-O'Donnell JT, Pennathur S, Fygenson DK.

Langmuir. 2016 Jan 19;32(2):569-76. doi: 10.1021/acs.langmuir.5b03934. Epub 2016 Jan 6.

PMID:
26685711
10.

Heparin octasaccharide decoy liposomes inhibit replication of multiple viruses.

Hendricks GL, Velazquez L, Pham S, Qaisar N, Delaney JC, Viswanathan K, Albers L, Comolli JC, Shriver Z, Knipe DM, Kurt-Jones EA, Fygenson DK, Trevejo JM, Wang JP, Finberg RW.

Antiviral Res. 2015 Apr;116:34-44. doi: 10.1016/j.antiviral.2015.01.008. Epub 2015 Jan 28.

11.

Fluorescent silver nanocluster DNA probes for multiplexed detection using microfluidic capillary electrophoresis.

Del Bonis-O'Donnell JT, Fygenson DK, Pennathur S.

Analyst. 2015 Mar 7;140(5):1609-15. doi: 10.1039/c4an01735h.

PMID:
25601044
12.

Nanoscale structure and microscale stiffness of DNA nanotubes.

Schiffels D, Liedl T, Fygenson DK.

ACS Nano. 2013 Aug 27;7(8):6700-10. doi: 10.1021/nn401362p. Epub 2013 Jul 31.

PMID:
23879368
13.

Sialylneolacto-N-tetraose c (LSTc)-bearing liposomal decoys capture influenza A virus.

Hendricks GL, Weirich KL, Viswanathan K, Li J, Shriver ZH, Ashour J, Ploegh HL, Kurt-Jones EA, Fygenson DK, Finberg RW, Comolli JC, Wang JP.

J Biol Chem. 2013 Mar 22;288(12):8061-73. doi: 10.1074/jbc.M112.437202. Epub 2013 Jan 28.

14.

Active, motor-driven mechanics in a DNA gel.

Bertrand OJ, Fygenson DK, Saleh OA.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17342-7. doi: 10.1073/pnas.1208732109. Epub 2012 Oct 8.

15.

Few-atom fluorescent silver clusters assemble at programmed sites on DNA nanotubes.

O'Neill PR, Young K, Schiffels D, Fygenson DK.

Nano Lett. 2012 Nov 14;12(11):5464-9. doi: 10.1021/nl3017797. Epub 2012 Oct 3.

PMID:
23025790
16.

Design and characterization of 1D nanotubes and 2D periodic arrays self-assembled from DNA multi-helix bundles.

Wang T, Schiffels D, Cuesta SM, Fygenson DK, Seeman NC.

J Am Chem Soc. 2012 Jan 25;134(3):1606-16. doi: 10.1021/ja207976q. Epub 2012 Jan 17. Erratum in: J Am Chem Soc. 2013 Jul 10;135(27):10178.

17.

Collective and single cell behavior in epithelial contact inhibition.

Puliafito A, Hufnagel L, Neveu P, Streichan S, Sigal A, Fygenson DK, Shraiman BI.

Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):739-44. doi: 10.1073/pnas.1007809109. Epub 2012 Jan 6.

18.

Distinct conformations of DNA-stabilized fluorescent silver nanoclusters revealed by electrophoretic mobility and diffusivity measurements.

Driehorst T, O'Neill P, Goodwin PM, Pennathur S, Fygenson DK.

Langmuir. 2011 Jul 19;27(14):8923-33. doi: 10.1021/la200837z. Epub 2011 Jun 17.

PMID:
21682258
19.

Bilayer edges catalyze supported lipid bilayer formation.

Weirich KL, Israelachvili JN, Fygenson DK.

Biophys J. 2010 Jan 6;98(1):85-92. doi: 10.1016/j.bpj.2009.09.050.

20.

Tau-isoform dependent enhancement of taxol mobility through microtubules.

Park H, Kim M, Fygenson DK.

Arch Biochem Biophys. 2008 Oct 1;478(1):119-26. doi: 10.1016/j.abb.2008.07.020. Epub 2008 Jul 26.

PMID:
18691553
21.

Improving fluorescence detection in lab on chip devices.

Pennathur S, Fygenson DK.

Lab Chip. 2008 May;8(5):649-52. doi: 10.1039/b805064n. Epub 2008 Apr 10. Review. No abstract available.

PMID:
18432330
22.

Topographical changes of biconvex objects during equatorial traction: an analogy for accommodation of the human lens.

Schachar RA, Fygenson DK.

Br J Ophthalmol. 2007 Dec;91(12):1698-703. Epub 2006 Jul 12.

23.

Sturdier DNA nanotubes via ligation.

O'Neill P, Rothemund PW, Kumar A, Fygenson DK.

Nano Lett. 2006 Jul;6(7):1379-83.

PMID:
16834415
24.

Joining and scission in the self-assembly of nanotubes from DNA tiles.

Ekani-Nkodo A, Kumar A, Fygenson DK.

Phys Rev Lett. 2004 Dec 31;93(26 Pt 1):268301. Epub 2004 Dec 20.

PMID:
15698032
25.

Design and characterization of programmable DNA nanotubes.

Rothemund PW, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, Winfree E.

J Am Chem Soc. 2004 Dec 22;126(50):16344-52. Erratum in: J Am Chem Soc. 2013 Feb 20;135(7):2864.

PMID:
15600335
26.

Tau induces cooperative Taxol binding to microtubules.

Ross JL, Santangelo CD, Makrides V, Fygenson DK.

Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12910-5. Epub 2004 Aug 23.

27.
28.

Mobility of taxol in microtubule bundles.

Ross JL, Fygenson DK.

Biophys J. 2003 Jun;84(6):3959-67.

29.

Evidence that collagen fibrils in tendons are inhomogeneously structured in a tubelike manner.

Gutsmann T, Fantner GE, Venturoni M, Ekani-Nkodo A, Thompson JB, Kindt JH, Morse DE, Fygenson DK, Hansma PK.

Biophys J. 2003 Apr;84(4):2593-8.

30.

Size exclusion and diffusion of fluoresceinated probes within collagen fibrils.

Ekani-Nkodo A, Fygenson DK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Feb;67(2 Pt 1):021909. Epub 2003 Feb 21.

PMID:
12636717
31.
32.

Gramicidin channel kinetics under tension.

Goulian M, Mesquita ON, Fygenson DK, Nielsen C, Andersen OS, Libchaber A.

Biophys J. 1998 Jan;74(1):328-37.

33.

Appendix. Gel kinetic analysis of polymerase fidelity in the presence of multiple enzyme DNA encounters.

Fygenson DK, Goodman MF.

J Biol Chem. 1997 Oct 31;272(44):27931-5. No abstract available.

35.

Phase diagram of microtubules.

Fygenson DK, Braun E, Libchaber A.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1994 Aug;50(2):1579-1588. No abstract available.

PMID:
9962129

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