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Items: 1 to 50 of 83

1.

mmi1 and rep2 mRNAs are novel RNA targets of the Mei2 RNA-binding protein during early meiosis in Schizosaccharomyces pombe.

Mukherjee K, Futcher B, Leatherwood J.

Open Biol. 2018 Sep 26;8(9). pii: 180110. doi: 10.1098/rsob.180110.

2.

Extensive recoding of dengue virus type 2 specifically reduces replication in primate cells without gain-of-function in Aedes aegypti mosquitoes.

Stauft CB, Shen SH, Song Y, Gorbatsevych O, Asare E, Futcher B, Mueller S, Payne A, Brecher M, Kramer L, Wimmer E.

PLoS One. 2018 Sep 7;13(9):e0198303. doi: 10.1371/journal.pone.0198303. eCollection 2018.

3.

Prokaryotic coding regions have little if any specific depletion of Shine-Dalgarno motifs.

Yurovsky A, Amin MR, Gardin J, Chen Y, Skiena S, Futcher B.

PLoS One. 2018 Aug 23;13(8):e0202768. doi: 10.1371/journal.pone.0202768. eCollection 2018.

4.

Re-annotation of 12,495 prokaryotic 16S rRNA 3' ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences.

Amin MR, Yurovsky A, Chen Y, Skiena S, Futcher B.

PLoS One. 2018 Aug 23;13(8):e0202767. doi: 10.1371/journal.pone.0202767. eCollection 2018.

5.

Relative contributions of the structural and catalytic roles of Rrp6 in exosomal degradation of individual mRNAs.

Mukherjee K, Gardin J, Futcher B, Leatherwood J.

RNA. 2016 Sep;22(9):1311-9. doi: 10.1261/rna.051490.115. Epub 2016 Jul 11.

6.

Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae.

Zhao G, Chen Y, Carey L, Futcher B.

Mol Cell. 2016 May 19;62(4):546-57. doi: 10.1016/j.molcel.2016.04.026.

7.

The non-homologous end-joining pathway of S. cerevisiae works effectively in G1-phase cells, and religates cognate ends correctly and non-randomly.

Gao S, Honey S, Futcher B, Grollman AP.

DNA Repair (Amst). 2016 Jun;42:1-10. doi: 10.1016/j.dnarep.2016.03.013. Epub 2016 Apr 14.

8.

Reply to Simmonds et al.: Codon pair and dinucleotide bias have not been functionally distinguished.

Futcher B, Gorbatsevych O, Shen SH, Stauft CB, Song Y, Wang B, Leatherwood J, Gardin J, Yurovsky A, Mueller S, Wimmer E.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):E3635-6. doi: 10.1073/pnas.1507710112. Epub 2015 Jun 12. No abstract available.

9.

A new transcription factor for mitosis: in Schizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression.

Garg A, Futcher B, Leatherwood J.

Nucleic Acids Res. 2015 Aug 18;43(14):6874-88. doi: 10.1093/nar/gkv274. Epub 2015 Apr 23.

10.

Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference.

Shen SH, Stauft CB, Gorbatsevych O, Song Y, Ward CB, Yurovsky A, Mueller S, Futcher B, Wimmer E.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4749-54. doi: 10.1073/pnas.1502864112. Epub 2015 Mar 30.

11.

Measurement of average decoding rates of the 61 sense codons in vivo.

Gardin J, Yeasmin R, Yurovsky A, Cai Y, Skiena S, Futcher B.

Elife. 2014 Oct 27;3. doi: 10.7554/eLife.03735.

12.

Effects of the yeast RNA-binding protein Whi3 on the half-life and abundance of CLN3 mRNA and other targets.

Cai Y, Futcher B.

PLoS One. 2013 Dec 30;8(12):e84630. doi: 10.1371/journal.pone.0084630. eCollection 2013.

13.

A developmentally regulated translational control pathway establishes the meiotic chromosome segregation pattern.

Berchowitz LE, Gajadhar AS, van Werven FJ, De Rosa AA, Samoylova ML, Brar GA, Xu Y, Xiao C, Futcher B, Weissman JS, White FM, Amon A.

Genes Dev. 2013 Oct 1;27(19):2147-63. doi: 10.1101/gad.224253.113.

14.

Deliberate reduction of hemagglutinin and neuraminidase expression of influenza virus leads to an ultraprotective live vaccine in mice.

Yang C, Skiena S, Futcher B, Mueller S, Wimmer E.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9481-6. doi: 10.1073/pnas.1307473110. Epub 2013 May 20.

15.

Identification of two functionally redundant RNA elements in the coding sequence of poliovirus using computer-generated design.

Song Y, Liu Y, Ward CB, Mueller S, Futcher B, Skiena S, Paul AV, Wimmer E.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14301-7. doi: 10.1073/pnas.1211484109. Epub 2012 Aug 10.

16.

Repression of meiotic genes by antisense transcription and by Fkh2 transcription factor in Schizosaccharomyces pombe.

Chen HM, Rosebrock AP, Khan SR, Futcher B, Leatherwood JK.

PLoS One. 2012;7(1):e29917. doi: 10.1371/journal.pone.0029917. Epub 2012 Jan 6.

17.

The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover.

Chen HM, Futcher B, Leatherwood J.

PLoS One. 2011;6(10):e26804. doi: 10.1371/journal.pone.0026804. Epub 2011 Oct 27.

18.

The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle.

Ferrezuelo F, Colomina N, Futcher B, Aldea M.

Genome Biol. 2010;11(6):R67. doi: 10.1186/gb-2010-11-6-r67. Epub 2010 Jun 23.

19.

Live attenuated influenza virus vaccines by computer-aided rational design.

Mueller S, Coleman JR, Papamichail D, Ward CB, Nimnual A, Futcher B, Skiena S, Wimmer E.

Nat Biotechnol. 2010 Jul;28(7):723-6. doi: 10.1038/nbt.1636. Epub 2010 Jun 13.

20.

King of the castle: competition between repressors and activators on the Mcm1 platform.

Leatherwood J, Futcher B.

Mol Cell. 2010 Apr 9;38(1):1-2. doi: 10.1016/j.molcel.2010.03.011.

21.

Daughter-specific transcription factors regulate cell size control in budding yeast.

Di Talia S, Wang H, Skotheim JM, Rosebrock AP, Futcher B, Cross FR.

PLoS Biol. 2009 Oct;7(10):e1000221. doi: 10.1371/journal.pbio.1000221. Epub 2009 Oct 20.

22.

Recruitment of Cln3 cyclin to promoters controls cell cycle entry via histone deacetylase and other targets.

Wang H, Carey LB, Cai Y, Wijnen H, Futcher B.

PLoS Biol. 2009 Sep;7(9):e1000189. doi: 10.1371/journal.pbio.1000189. Epub 2009 Sep 8.

23.

Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast.

Pyne S, Gutman R, Kim CS, Futcher B.

BMC Genomics. 2009 Sep 17;10:440. doi: 10.1186/1471-2164-10-440.

24.

TgI4 lipase: a big fat target for cell-cycle entry.

Futcher B.

Mol Cell. 2009 Jan 30;33(2):143-4. doi: 10.1016/j.molcel.2009.01.003.

25.

Bck2 is a phase-independent activator of cell cycle-regulated genes in yeast.

Ferrezuelo F, Aldea M, Futcher B.

Cell Cycle. 2009 Jan 15;8(2):239-52.

PMID:
19158491
26.

Molecular biology: Bound to splice.

Futcher B, Leatherwood JK.

Nature. 2008 Oct 16;455(7215):885-6. doi: 10.1038/455885a. No abstract available.

PMID:
18923505
27.

Cdc7-Dbf4 regulates NDT80 transcription as well as reductional segregation during budding yeast meiosis.

Lo HC, Wan L, Rosebrock A, Futcher B, Hollingsworth NM.

Mol Biol Cell. 2008 Nov;19(11):4956-67. doi: 10.1091/mbc.E08-07-0755. Epub 2008 Sep 3.

28.

Huxley's revenge: cell-cycle entry, positive feedback, and the G1 cyclins.

Carey LB, Leatherwood JK, Futcher B.

Mol Cell. 2008 Aug 8;31(3):307-8. doi: 10.1016/j.molcel.2008.07.012.

29.

Virus attenuation by genome-scale changes in codon pair bias.

Coleman JR, Papamichail D, Skiena S, Futcher B, Wimmer E, Mueller S.

Science. 2008 Jun 27;320(5884):1784-7. doi: 10.1126/science.1155761.

30.

Cyclins in meiosis: lost in translation.

Futcher B.

Dev Cell. 2008 May;14(5):644-5. doi: 10.1016/j.devcel.2008.04.009.

31.

Cdc28-Clb5 (CDK-S) and Cdc7-Dbf4 (DDK) collaborate to initiate meiotic recombination in yeast.

Wan L, Niu H, Futcher B, Zhang C, Shokat KM, Boulton SJ, Hollingsworth NM.

Genes Dev. 2008 Feb 1;22(3):386-97. doi: 10.1101/gad.1626408.

32.

The size of the nucleus increases as yeast cells grow.

Jorgensen P, Edgington NP, Schneider BL, Rupes I, Tyers M, Futcher B.

Mol Biol Cell. 2007 Sep;18(9):3523-32. Epub 2007 Jun 27.

33.

Roles of the CDK phosphorylation sites of yeast Cdc6 in chromatin binding and rereplication.

Honey S, Futcher B.

Mol Biol Cell. 2007 Apr;18(4):1324-36. Epub 2007 Jan 31.

34.

Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets.

Pyne S, Futcher B, Skiena S.

Bioinformatics. 2006 Oct 15;22(20):2516-22. Epub 2006 Aug 14.

PMID:
16908499
35.

Metabolic cycle, cell cycle, and the finishing kick to Start.

Futcher B.

Genome Biol. 2006;7(4):107. Epub 2006 Apr 26.

36.

The cell cycle-regulated genes of Schizosaccharomyces pombe.

Oliva A, Rosebrock A, Ferrezuelo F, Pyne S, Chen H, Skiena S, Futcher B, Leatherwood J.

PLoS Biol. 2005 Jul;3(7):e225. Epub 2005 Jun 28.

37.

Copy correction and concerted evolution in the conservation of yeast genes.

Pyne S, Skiena S, Futcher B.

Genetics. 2005 Aug;170(4):1501-13. Epub 2005 May 23.

38.

Growth rate and cell size modulate the synthesis of, and requirement for, G1-phase cyclins at start.

Schneider BL, Zhang J, Markwardt J, Tokiwa G, Volpe T, Honey S, Futcher B.

Mol Cell Biol. 2004 Dec;24(24):10802-13.

39.

Identifying combinatorial regulation of transcription factors and binding motifs.

Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ.

Genome Biol. 2004;5(8):R56. Epub 2004 Jul 28.

40.

Transcriptional regulatory networks and the yeast cell cycle.

Futcher B.

Curr Opin Cell Biol. 2002 Dec;14(6):676-83. Review.

PMID:
12473339
41.

Biogenesis of yeast telomerase depends on the importin mtr10.

Ferrezuelo F, Steiner B, Aldea M, Futcher B.

Mol Cell Biol. 2002 Sep;22(17):6046-55.

42.

The G(1) cyclin Cln3 promotes cell cycle entry via the transcription factor Swi6.

Wijnen H, Landman A, Futcher B.

Mol Cell Biol. 2002 Jun;22(12):4402-18.

43.

Relationship between the function and the location of G1 cyclins in S. cerevisiae.

Edgington NP, Futcher B.

J Cell Sci. 2001 Dec;114(Pt 24):4599-611.

44.

Whi3 binds the mRNA of the G1 cyclin CLN3 to modulate cell fate in budding yeast.

Garí E, Volpe T, Wang H, Gallego C, Futcher B, Aldea M.

Genes Dev. 2001 Nov 1;15(21):2803-8.

45.
46.

A novel multiple affinity purification tag and its use in identification of proteins associated with a cyclin-CDK complex.

Honey S, Schneider BL, Schieltz DM, Yates JR, Futcher B.

Nucleic Acids Res. 2001 Feb 15;29(4):E24.

47.

Microarrays and cell cycle transcription in yeast.

Futcher B.

Curr Opin Cell Biol. 2000 Dec;12(6):710-5. Review.

PMID:
11063936
48.

Web alert

Futcher B, Pines J, Lafont F.

Curr Opin Cell Biol. 2000 Dec;12(6):653-4.

PMID:
11063927
49.

Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth.

Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, Davis TN, Futcher B.

Nature. 2000 Jul 6;406(6791):90-4.

PMID:
10894548
50.

Cell cycle synchronization.

Futcher B.

Methods Cell Sci. 1999;21(2-3):79-86.

PMID:
10728640

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