Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 116

1.

Complete Genome Sequences of Three Star-Shaped Bacteria, Stella humosa, Stella vacuolata, and Stella Species ATCC 35155.

Shibai A, Maeda T, Kawada M, Kotani H, Sakata N, Furusawa C.

Microbiol Resour Announc. 2019 Aug 8;8(32). pii: e00719-19. doi: 10.1128/MRA.00719-19.

2.

Theoretical modeling reveals that regulatory T cells increase T cell-interaction with antigen-presenting cells for stable immune-tolerance.

Yamaguchi T, Teraguchi S, Furusawa C, Machiyama H, Watanabe TM, Fujita H, Sakaguchi S, Yanagida T.

Int Immunol. 2019 May 25. pii: dxz043. doi: 10.1093/intimm/dxz043. [Epub ahead of print]

PMID:
31131864
3.

High-throughput identification of the sensitivities of an Escherichia coli ΔrecA mutant strain to various chemical compounds.

Maeda T, Horinouchi T, Sakata N, Sakai A, Furusawa C.

J Antibiot (Tokyo). 2019 Jul;72(7):566-573. doi: 10.1038/s41429-019-0160-5. Epub 2019 Feb 21.

PMID:
30792518
4.

Understanding and engineering alcohol-tolerant bacteria using OMICS technology.

Horinouchi T, Maeda T, Furusawa C.

World J Microbiol Biotechnol. 2018 Oct 19;34(11):157. doi: 10.1007/s11274-018-2542-4. Review.

5.

Raman spectral signature reflects transcriptomic features of antibiotic resistance in Escherichia coli.

Germond A, Ichimura T, Horinouchi T, Fujita H, Furusawa C, Watanabe TM.

Commun Biol. 2018 Jul 2;1:85. doi: 10.1038/s42003-018-0093-8. eCollection 2018.

6.

Enhancement of K-strategy evolution in histidine utilization using a container with compartments.

Komori T, Shibai A, Saito H, Akeno Y, Germond A, Horinouchi T, Furusawa C, Tsuru S.

Genes Cells. 2018 Oct;23(10):893-903. doi: 10.1111/gtc.12640. Epub 2018 Sep 26.

7.

Single cell analysis reveals a biophysical aspect of collective cell-state transition in embryonic stem cell differentiation.

Okamoto K, Germond A, Fujita H, Furusawa C, Okada Y, Watanabe TM.

Sci Rep. 2018 Aug 10;8(1):11965. doi: 10.1038/s41598-018-30461-2.

8.

Macroscopic Theory for Evolving Biological Systems Akin to Thermodynamics.

Kaneko K, Furusawa C.

Annu Rev Biophys. 2018 May 20;47:273-290. doi: 10.1146/annurev-biophys-070317-033155. Review.

PMID:
29792817
9.

Formation of dominant mode by evolution in biological systems.

Furusawa C, Kaneko K.

Phys Rev E. 2018 Apr;97(4-1):042410. doi: 10.1103/PhysRevE.97.042410.

PMID:
29758752
10.

Application of adaptive laboratory evolution to overcome a flux limitation in an Escherichia coli production strain.

Tokuyama K, Toya Y, Horinouchi T, Furusawa C, Matsuda F, Shimizu H.

Biotechnol Bioeng. 2018 Jun;115(6):1542-1551. doi: 10.1002/bit.26568. Epub 2018 Mar 8.

PMID:
29457640
11.

Toward prediction and control of antibiotic-resistance evolution.

Furusawa C, Horinouchi T, Maeda T.

Curr Opin Biotechnol. 2018 Dec;54:45-49. doi: 10.1016/j.copbio.2018.01.026. Epub 2018 Feb 14. Review.

PMID:
29452927
12.

Integrated Analysis of the Transcriptome and Metabolome of Corynebacterium glutamicum during Penicillin-Induced Glutamic Acid Production.

Hirasawa T, Saito M, Yoshikawa K, Furusawa C, Shmizu H.

Biotechnol J. 2018 May;13(5):e1700612. doi: 10.1002/biot.201700612. Epub 2018 Feb 5.

PMID:
29323472
13.

Metabolic dynamics restricted by conserved carriers: Jamming and feedback.

Hatakeyama TS, Furusawa C.

PLoS Comput Biol. 2017 Nov 7;13(11):e1005847. doi: 10.1371/journal.pcbi.1005847. eCollection 2017 Nov.

14.

Prediction of Cross-resistance and Collateral Sensitivity by Gene Expression profiles and Genomic Mutations.

Horinouchi T, Suzuki S, Kotani H, Tanabe K, Sakata N, Shimizu H, Furusawa C.

Sci Rep. 2017 Oct 25;7(1):14009. doi: 10.1038/s41598-017-14335-7.

15.

Improvement of isopropanol tolerance of Escherichia coli using adaptive laboratory evolution and omics technologies.

Horinouchi T, Sakai A, Kotani H, Tanabe K, Furusawa C.

J Biotechnol. 2017 Aug 10;255:47-56. doi: 10.1016/j.jbiotec.2017.06.408. Epub 2017 Jun 20.

PMID:
28645581
16.

Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro.

Yoshida M, Reyes SG, Tsuda S, Horinouchi T, Furusawa C, Cronin L.

Nat Commun. 2017 Jun 8;8:15589. doi: 10.1038/ncomms15589.

17.

Raman spectroscopy as a tool for ecology and evolution.

Germond A, Kumar V, Ichimura T, Moreau J, Furusawa C, Fujita H, Watanabe TM.

J R Soc Interface. 2017 Jun;14(131). pii: 20170174. doi: 10.1098/rsif.2017.0174. Review.

18.

Acceleration and suppression of resistance development by antibiotic combinations.

Suzuki S, Horinouchi T, Furusawa C.

BMC Genomics. 2017 Apr 26;18(1):328. doi: 10.1186/s12864-017-3718-2.

19.

Analysis of Drug Resistance Using Experimental Evolution.

Furusawa C.

Yakugaku Zasshi. 2017;137(4):373-376. doi: 10.1248/yakushi.16-00235-1. Review. Japanese.

20.

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation.

Matsumoto H, Kiryu H, Furusawa C, Ko MSH, Ko SBH, Gouda N, Hayashi T, Nikaido I.

Bioinformatics. 2017 Aug 1;33(15):2314-2321. doi: 10.1093/bioinformatics/btx194.

21.

Expression Profiling of Antibiotic-Resistant Bacteria Obtained by Laboratory Evolution.

Suzuki S, Horinouchi T, Furusawa C.

Methods Mol Biol. 2017;1520:263-279. doi: 10.1007/978-1-4939-6634-9_16.

PMID:
27873258
22.

Robust and Accurate Discrimination of Self/Non-Self Antigen Presentations by Regulatory T Cell Suppression.

Furusawa C, Yamaguchi T.

PLoS One. 2016 Sep 26;11(9):e0163134. doi: 10.1371/journal.pone.0163134. eCollection 2016.

23.

Salacia chinensis L. extract ameliorates abnormal glucose metabolism and improves the bone strength and accumulation of AGEs in type 1 diabetic rats.

Shirakawa J, Arakawa S, Tagawa T, Gotoh K, Oikawa N, Ohno R, Shinagawa M, Hatano K, Sugawa H, Ichimaru K, Kinoshita S, Furusawa C, Yamanaka M, Kobayashi M, Masuda S, Nagai M, Nagai R.

Food Funct. 2016 Jun 15;7(6):2508-15. doi: 10.1039/c5fo01618e. Epub 2016 Apr 28.

PMID:
27121272
24.

Soft-shelled turtle eggs inhibit the formation of AGEs in the serum and skin of diabetic rats.

Yamanaka M, Shirakawa J, Ohno R, Shinagawa M, Hatano K, Sugawa H, Arakawa S, Furusawa C, Nagai M, Nagai R.

J Clin Biochem Nutr. 2016 Mar;58(2):130-4. doi: 10.3164/jcbn.15-131. Epub 2016 Jan 22.

25.

Construction of a Genome-Scale Metabolic Model of Arthrospira platensis NIES-39 and Metabolic Design for Cyanobacterial Bioproduction.

Yoshikawa K, Aikawa S, Kojima Y, Toya Y, Furusawa C, Kondo A, Shimizu H.

PLoS One. 2015 Dec 7;10(12):e0144430. doi: 10.1371/journal.pone.0144430. eCollection 2015.

26.

Phenotypic changes associated with the fitness cost in antibiotic resistant Escherichia coli strains.

Suzuki S, Horinouchi T, Furusawa C.

Mol Biosyst. 2016 Feb;12(2):414-20. doi: 10.1039/c5mb00590f.

PMID:
26625335
27.

Bacterial transcriptome reorganization in thermal adaptive evolution.

Ying BW, Matsumoto Y, Kitahara K, Suzuki S, Ono N, Furusawa C, Kishimoto T, Yomo T.

BMC Genomics. 2015 Oct 16;16:802. doi: 10.1186/s12864-015-1999-x.

28.

Phenotypic convergence in bacterial adaptive evolution to ethanol stress.

Horinouchi T, Suzuki S, Hirasawa T, Ono N, Yomo T, Shimizu H, Furusawa C.

BMC Evol Biol. 2015 Sep 3;15:180. doi: 10.1186/s12862-015-0454-6.

29.

Pluripotency, Differentiation, and Reprogramming: A Gene Expression Dynamics Model with Epigenetic Feedback Regulation.

Miyamoto T, Furusawa C, Kaneko K.

PLoS Comput Biol. 2015 Aug 26;11(8):e1004476. doi: 10.1371/journal.pcbi.1004476. eCollection 2015 Aug.

30.

Global relationships in fluctuation and response in adaptive evolution.

Furusawa C, Kaneko K.

J R Soc Interface. 2015 Aug 6;12(109):20150482. doi: 10.1098/rsif.2015.0482.

31.

A new triterpenoid glycoside from the leaves and stems of Duranta repens.

Furusawa C, Yasuda S, Tsuji H, Ito S, Miyashita H, Yoshimitsu H, Nohara T, Ono M.

Nat Prod Res. 2016;30(2):246-50. doi: 10.1080/14786419.2015.1046870. Epub 2015 Jul 2.

PMID:
26134247
32.

Suppression of antibiotic resistance acquisition by combined use of antibiotics.

Suzuki S, Horinouchi T, Furusawa C.

J Biosci Bioeng. 2015 Oct;120(4):467-9. doi: 10.1016/j.jbiosc.2015.02.003. Epub 2015 Mar 5.

PMID:
25746894
33.

¹³C-based metabolic flux analysis of Saccharomyces cerevisiae with a reduced Crabtree effect.

Kajihata S, Matsuda F, Yoshimi M, Hayakawa K, Furusawa C, Kanda A, Shimizu H.

J Biosci Bioeng. 2015 Aug;120(2):140-4. doi: 10.1016/j.jbiosc.2014.12.014. Epub 2015 Jan 26.

PMID:
25634548
34.

Prediction of antibiotic resistance by gene expression profiles.

Suzuki S, Horinouchi T, Furusawa C.

Nat Commun. 2014 Dec 17;5:5792. doi: 10.1038/ncomms6792.

35.

A new hemiterpene glycoside from the ripe tomatoes.

Ono M, Yasuda S, Shiono Y, Furusawa C, Inaba S, Tanaka T, Ikeda T, Nohara T.

Nat Prod Res. 2015 Feb;29(3):262-7. doi: 10.1080/14786419.2014.974053. Epub 2014 Nov 25.

PMID:
25421719
36.
37.

OpenMebius: an open source software for isotopically nonstationary 13C-based metabolic flux analysis.

Kajihata S, Furusawa C, Matsuda F, Shimizu H.

Biomed Res Int. 2014;2014:627014. doi: 10.1155/2014/627014. Epub 2014 Jun 11.

38.

Integrated metabolic flux and omics analysis of Synechocystis sp. PCC 6803 under mixotrophic and photoheterotrophic conditions.

Nakajima T, Kajihata S, Yoshikawa K, Matsuda F, Furusawa C, Hirasawa T, Shimizu H.

Plant Cell Physiol. 2014 Sep;55(9):1605-12. doi: 10.1093/pcp/pcu091. Epub 2014 Jun 26.

PMID:
24969233
39.

Reliable Metabolic Flux Estimation in Escherichia coli Central Carbon Metabolism Using Intracellular Free Amino Acids.

Okahashi N, Kajihata S, Furusawa C, Shimizu H.

Metabolites. 2014 May 30;4(2):408-20. doi: 10.3390/metabo4020408.

40.

Increased 3-hydroxypropionic acid production from glycerol, by modification of central metabolism in Escherichia coli.

Tokuyama K, Ohno S, Yoshikawa K, Hirasawa T, Tanaka S, Furusawa C, Shimizu H.

Microb Cell Fact. 2014 May 7;13:64. doi: 10.1186/1475-2859-13-64.

41.

Development of an automated culture system for laboratory evolution.

Horinouchi T, Minamoto T, Suzuki S, Shimizu H, Furusawa C.

J Lab Autom. 2014 Oct;19(5):478-82. doi: 10.1177/2211068214521417. Epub 2014 Feb 13.

PMID:
24526062
42.

FastPros: screening of reaction knockout strategies for metabolic engineering.

Ohno S, Shimizu H, Furusawa C.

Bioinformatics. 2014 Apr 1;30(7):981-7. doi: 10.1093/bioinformatics/btt672. Epub 2013 Nov 19.

43.

Epigenetic feedback regulation accelerates adaptation and evolution.

Furusawa C, Kaneko K.

PLoS One. 2013 May 8;8(5):e61251. doi: 10.1371/journal.pone.0061251. Print 2013.

44.

Genome-wide identification of the targets for genetic manipulation to improve L-lactate production by Saccharomyces cerevisiae by using a single-gene deletion strain collection.

Hirasawa T, Takekuni M, Yoshikawa K, Ookubo A, Furusawa C, Shimizu H.

J Biotechnol. 2013 Oct 20;168(2):185-93. doi: 10.1016/j.jbiotec.2013.04.020. Epub 2013 May 9.

PMID:
23665193
45.

ArtPathDesign: rational heterologous pathway design system for the production of nonnative metabolites.

Chatsurachai S, Furusawa C, Shimizu H.

J Biosci Bioeng. 2013 Oct;116(4):524-7. doi: 10.1016/j.jbiosc.2013.04.002. Epub 2013 May 9.

PMID:
23664926
46.

Integrated transcriptomic and metabolomic analysis of the central metabolism of Synechocystis sp. PCC 6803 under different trophic conditions.

Yoshikawa K, Hirasawa T, Ogawa K, Hidaka Y, Nakajima T, Furusawa C, Shimizu H.

Biotechnol J. 2013 May;8(5):571-80. doi: 10.1002/biot.201200235. Epub 2013 Apr 11.

PMID:
23495147
47.

Utilization of Saccharomyces cerevisiae recombinant strain incapable of both ethanol and glycerol biosynthesis for anaerobic bioproduction.

Ida Y, Hirasawa T, Furusawa C, Shimizu H.

Appl Microbiol Biotechnol. 2013 Jun;97(11):4811-9. doi: 10.1007/s00253-013-4760-x. Epub 2013 Feb 26.

PMID:
23435983
48.

Development of a physical model-based algorithm for the detection of single-nucleotide substitutions by using tiling microarrays.

Ono N, Suzuki S, Furusawa C, Shimizu H, Yomo T.

PLoS One. 2013;8(1):e54571. doi: 10.1371/journal.pone.0054571. Epub 2013 Jan 28.

49.

Molecular mechanisms and metabolic engineering of glutamate overproduction in Corynebacterium glutamicum.

Hirasawa T, Kim J, Shirai T, Furusawa C, Shimizu H.

Subcell Biochem. 2012;64:261-81. doi: 10.1007/978-94-007-5055-5_13. Review.

PMID:
23080255
50.

A dynamical-systems view of stem cell biology.

Furusawa C, Kaneko K.

Science. 2012 Oct 12;338(6104):215-7. doi: 10.1126/science.1224311. Review.

PMID:
23066073

Supplemental Content

Loading ...
Support Center