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Items: 22

1.

RNA Interactions Are Essential for CTCF-Mediated Genome Organization.

Saldaña-Meyer R, Rodriguez-Hernaez J, Escobar T, Nishana M, Jácome-López K, Nora EP, Bruneau BG, Tsirigos A, Furlan-Magaril M, Skok J, Reinberg D.

Mol Cell. 2019 Nov 7;76(3):412-422.e5. doi: 10.1016/j.molcel.2019.08.015. Epub 2019 Sep 12.

PMID:
31522988
2.

RNA proximity sequencing reveals the spatial organization of the transcriptome in the nucleus.

Morf J, Wingett SW, Farabella I, Cairns J, Furlan-Magaril M, Jiménez-García LF, Liu X, Craig FF, Walker S, Segonds-Pichon A, Andrews S, Marti-Renom MA, Fraser P.

Nat Biotechnol. 2019 Jul;37(7):793-802. doi: 10.1038/s41587-019-0166-3. Epub 2019 Jul 1.

PMID:
31267103
3.

Promoter Capture Hi-C: High-resolution, Genome-wide Profiling of Promoter Interactions.

Schoenfelder S, Javierre BM, Furlan-Magaril M, Wingett SW, Fraser P.

J Vis Exp. 2018 Jun 28;(136). doi: 10.3791/57320.

4.

Shaping Up the Embryo: The Role of Genome 3D Organization.

Jácome-López K, Furlan-Magaril M.

Methods Mol Biol. 2018;1752:157-175. doi: 10.1007/978-1-4939-7714-7_15. Review.

PMID:
29564771
5.

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition.

Novo CL, Javierre BM, Cairns J, Segonds-Pichon A, Wingett SW, Freire-Pritchett P, Furlan-Magaril M, Schoenfelder S, Fraser P, Rugg-Gunn PJ.

Cell Rep. 2018 Mar 6;22(10):2615-2627. doi: 10.1016/j.celrep.2018.02.040.

6.

Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.

Rubin AJ, Barajas BC, Furlan-Magaril M, Lopez-Pajares V, Mumbach MR, Howard I, Kim DS, Boxer LD, Cairns J, Spivakov M, Wingett SW, Shi M, Zhao Z, Greenleaf WJ, Kundaje A, Snyder M, Chang HY, Fraser P, Khavari PA.

Nat Genet. 2017 Oct;49(10):1522-1528. doi: 10.1038/ng.3935. Epub 2017 Aug 14.

7.

Global reorganisation of cis-regulatory units upon lineage commitment of human embryonic stem cells.

Freire-Pritchett P, Schoenfelder S, Várnai C, Wingett SW, Cairns J, Collier AJ, García-Vílchez R, Furlan-Magaril M, Osborne CS, Fraser P, Rugg-Gunn PJ, Spivakov M.

Elife. 2017 Mar 23;6. pii: e21926. doi: 10.7554/eLife.21926.

8.

HiCUP: pipeline for mapping and processing Hi-C data.

Wingett S, Ewels P, Furlan-Magaril M, Nagano T, Schoenfelder S, Fraser P, Andrews S.

F1000Res. 2015 Nov 20;4:1310. doi: 10.12688/f1000research.7334.1. eCollection 2015.

9.

Individual and Sequential Chromatin Immunoprecipitation Protocols.

Furlan-Magaril M, Recillas-Targa F.

Methods Mol Biol. 2015;1334:205-18. doi: 10.1007/978-1-4939-2877-4_13.

PMID:
26404152
10.

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome.

Schoenfelder S, Sugar R, Dimond A, Javierre BM, Armstrong H, Mifsud B, Dimitrova E, Matheson L, Tavares-Cadete F, Furlan-Magaril M, Segonds-Pichon A, Jurkowski W, Wingett SW, Tabbada K, Andrews S, Herman B, LeProust E, Osborne CS, Koseki H, Fraser P, Luscombe NM, Elderkin S.

Nat Genet. 2015 Oct;47(10):1179-1186. doi: 10.1038/ng.3393. Epub 2015 Aug 31.

11.

3D genome architecture from populations to single cells.

Furlan-Magaril M, Várnai C, Nagano T, Fraser P.

Curr Opin Genet Dev. 2015 Apr;31:36-41. doi: 10.1016/j.gde.2015.04.004. Epub 2015 May 16. Review.

PMID:
25966907
12.

The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

Schoenfelder S, Furlan-Magaril M, Mifsud B, Tavares-Cadete F, Sugar R, Javierre BM, Nagano T, Katsman Y, Sakthidevi M, Wingett SW, Dimitrova E, Dimond A, Edelman LB, Elderkin S, Tabbada K, Darbo E, Andrews S, Herman B, Higgs A, LeProust E, Osborne CS, Mitchell JA, Luscombe NM, Fraser P.

Genome Res. 2015 Apr;25(4):582-97. doi: 10.1101/gr.185272.114. Epub 2015 Mar 9.

13.

Global reorganization of the nuclear landscape in senescent cells.

Chandra T, Ewels PA, Schoenfelder S, Furlan-Magaril M, Wingett SW, Kirschner K, Thuret JY, Andrews S, Fraser P, Reik W.

Cell Rep. 2015 Feb 3;10(4):471-83. doi: 10.1016/j.celrep.2014.12.055. Epub 2015 Jan 29.

14.

Gain of DNA methylation is enhanced in the absence of CTCF at the human retinoblastoma gene promoter.

Dávalos-Salas M, Furlan-Magaril M, González-Buendía E, Valdes-Quezada C, Ayala-Ortega E, Recillas-Targa F.

BMC Cancer. 2011 Jun 10;11:232. doi: 10.1186/1471-2407-11-232.

15.

Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes.

Martin D, Pantoja C, Fernández Miñán A, Valdes-Quezada C, Moltó E, Matesanz F, Bogdanović O, de la Calle-Mustienes E, Domínguez O, Taher L, Furlan-Magaril M, Alcina A, Cañón S, Fedetz M, Blasco MA, Pereira PS, Ovcharenko I, Recillas-Targa F, Montoliu L, Manzanares M, Guigó R, Serrano M, Casares F, Gómez-Skarmeta JL.

Nat Struct Mol Biol. 2011 Jun;18(6):708-14. doi: 10.1038/nsmb.2059. Epub 2011 May 22. Erratum in: Nat Struct Mol Biol. 2011 Sep;18(9):1084.

16.

The Krüppel-like factor 4 controls biosynthesis of thyrotropin-releasing hormone during hypothalamus development.

Pérez-Monter C, Martínez-Armenta M, Miquelajauregui A, Furlan-Magaril M, Varela-Echavarría A, Recillas-Targa F, May V, Charli JL, Pérez-Martínez L.

Mol Cell Endocrinol. 2011 Feb 20;333(2):127-33. doi: 10.1016/j.mce.2010.12.020. Epub 2010 Dec 21.

PMID:
21182892
17.

An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression.

Furlan-Magaril M, Rebollar E, Guerrero G, Fernández A, Moltó E, González-Buendía E, Cantero M, Montoliu L, Recillas-Targa F.

Nucleic Acids Res. 2011 Jan;39(1):89-103. doi: 10.1093/nar/gkq740. Epub 2010 Sep 2.

18.

Sox9 represses alpha-sarcoglycan gene expression in early myogenic differentiation.

Hernández-Hernández JM, Delgado-Olguín P, Aguillón-Huerta V, Furlan-Magaril M, Recillas-Targa F, Coral-Vázquez RM.

J Mol Biol. 2009 Nov 20;394(1):1-14. doi: 10.1016/j.jmb.2009.08.057. Epub 2009 Aug 31.

PMID:
19729026
19.

Sequential chromatin immunoprecipitation protocol: ChIP-reChIP.

Furlan-Magaril M, Rincón-Arano H, Recillas-Targa F.

Methods Mol Biol. 2009;543:253-66. doi: 10.1007/978-1-60327-015-1_17.

PMID:
19378171
20.

Protection against telomeric position effects by the chicken cHS4 beta-globin insulator.

Rincón-Arano H, Furlan-Magaril M, Recillas-Targa F.

Proc Natl Acad Sci U S A. 2007 Aug 28;104(35):14044-9. Epub 2007 Aug 21.

21.

Globin genes transcriptional switching, chromatin structure and linked lessons to epigenetics in cancer: a comparative overview.

Guerrero G, Delgado-Olguín P, Escamilla-Del-Arenal M, Furlan-Magaril M, Rebollar E, De La Rosa-Velázquez IA, Soto-Reyes E, Rincón-Arano H, Valdes-Quezada C, Valadez-Graham V, Recillas-Targa F.

Comp Biochem Physiol A Mol Integr Physiol. 2007 Jul;147(3):750-60. Epub 2006 Nov 11. Review.

PMID:
17188536
22.

Neural stem cells in development and regenerative medicine.

Baizabal JM, Furlan-Magaril M, Santa-Olalla J, Covarrubias L.

Arch Med Res. 2003 Nov-Dec;34(6):572-88. Review.

PMID:
14734098

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