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Items: 27

1.

A role for BATF3 in TH9 differentiation and T-cell-driven mucosal pathologies.

Tsuda M, Hamade H, Thomas LS, Salumbides BC, Potdar AA, Wong MH, Nunnelee JS, Stamps JT, Neutzsky-Wulff AV, Barrett RJ, Wang Y, Tang J, Funari VA, Targan SR, Michelsen KS.

Mucosal Immunol. 2019 May;12(3):644-655. doi: 10.1038/s41385-018-0122-4. Epub 2019 Jan 7.

2.

Significant Improvement in Detecting BRAF, KRAS, and EGFR Mutations Using Next-Generation Sequencing as Compared with FDA-Cleared Kits.

Ma W, Brodie S, Agersborg S, Funari VA, Albitar M.

Mol Diagn Ther. 2017 Oct;21(5):571-579. doi: 10.1007/s40291-017-0290-z.

3.

Genome-wide analysis suggests a differential microRNA signature associated with normal and diabetic human corneal limbus.

Kulkarni M, Leszczynska A, Wei G, Winkler MA, Tang J, Funari VA, Deng N, Liu Z, Punj V, Deng SX, Ljubimov AV, Saghizadeh M.

Sci Rep. 2017 Jun 14;7(1):3448. doi: 10.1038/s41598-017-03449-7.

4.

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.

Xu Y, Mizuno T, Sridharan A, Du Y, Guo M, Tang J, Wikenheiser-Brokamp KA, Perl AT, Funari VA, Gokey JJ, Stripp BR, Whitsett JA.

JCI Insight. 2016 Dec 8;1(20):e90558. doi: 10.1172/jci.insight.90558.

5.

Immunological Consequences of Intestinal Fungal Dysbiosis.

Wheeler ML, Limon JJ, Bar AS, Leal CA, Gargus M, Tang J, Brown J, Funari VA, Wang HL, Crother TR, Arditi M, Underhill DM, Iliev ID.

Cell Host Microbe. 2016 Jun 8;19(6):865-73. doi: 10.1016/j.chom.2016.05.003. Epub 2016 May 26.

6.
7.

The development of innate lymphoid cells requires TOX-dependent generation of a common innate lymphoid cell progenitor.

Seehus CR, Aliahmad P, de la Torre B, Iliev ID, Spurka L, Funari VA, Kaye J.

Nat Immunol. 2015 Jun;16(6):599-608. doi: 10.1038/ni.3168. Epub 2015 Apr 27.

8.

Characterization of Bacterial and Fungal Microbiome in Children with Hirschsprung Disease with and without a History of Enterocolitis: A Multicenter Study.

Frykman PK, Nordenskjöld A, Kawaguchi A, Hui TT, Granström AL, Cheng Z, Tang J, Underhill DM, Iliev I, Funari VA, Wester T; HAEC Collaborative Research Group (HCRG).

PLoS One. 2015 Apr 24;10(4):e0124172. doi: 10.1371/journal.pone.0124172. eCollection 2015.

9.

Mycobiome: Approaches to analysis of intestinal fungi.

Tang J, Iliev ID, Brown J, Underhill DM, Funari VA.

J Immunol Methods. 2015 Jun;421:112-121. doi: 10.1016/j.jim.2015.04.004. Epub 2015 Apr 17.

10.

Molecular assessment of differences in the duodenal microbiome in subjects with irritable bowel syndrome.

Giamarellos-Bourboulis E, Tang J, Pyleris E, Pistiki A, Barbatzas C, Brown J, Lee CC, Harkins TT, Kim G, Weitsman S, Barlow GM, Funari VA, Pimentel M.

Scand J Gastroenterol. 2015;50(9):1076-87. doi: 10.3109/00365521.2015.1027261. Epub 2015 Apr 11.

PMID:
25865706
11.

TOX3 is expressed in mammary ER(+) epithelial cells and regulates ER target genes in luminal breast cancer.

Seksenyan A, Kadavallore A, Walts AE, de la Torre B, Berel D, Strom SP, Aliahmad P, Funari VA, Kaye J.

BMC Cancer. 2015 Jan 30;15:22. doi: 10.1186/s12885-015-1018-2.

12.

Differentiation of human limbal-derived induced pluripotent stem cells into limbal-like epithelium.

Sareen D, Saghizadeh M, Ornelas L, Winkler MA, Narwani K, Sahabian A, Funari VA, Tang J, Spurka L, Punj V, Maguen E, Rabinowitz YS, Svendsen CN, Ljubimov AV.

Stem Cells Transl Med. 2014 Sep;3(9):1002-12. doi: 10.5966/sctm.2014-0076. Epub 2014 Jul 28.

13.

Differentially expressed wound healing-related microRNAs in the human diabetic cornea.

Funari VA, Winkler M, Brown J, Dimitrijevich SD, Ljubimov AV, Saghizadeh M.

PLoS One. 2013 Dec 20;8(12):e84425. doi: 10.1371/journal.pone.0084425. eCollection 2013.

14.

Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis.

Iliev ID, Funari VA, Taylor KD, Nguyen Q, Reyes CN, Strom SP, Brown J, Becker CA, Fleshner PR, Dubinsky M, Rotter JI, Wang HL, McGovern DP, Brown GD, Underhill DM.

Science. 2012 Jun 8;336(6086):1314-7. doi: 10.1126/science.1221789. Epub 2012 Jun 6.

15.

Dominant and recessive forms of fibrochondrogenesis resulting from mutations at a second locus, COL11A2.

Tompson SW, Faqeih EA, Ala-Kokko L, Hecht JT, Miki R, Funari T, Funari VA, Nevarez L, Krakow D, Cohn DH.

Am J Med Genet A. 2012 Feb;158A(2):309-14. doi: 10.1002/ajmg.a.34406. Epub 2012 Jan 13.

16.

The importance of conventional radiography in the mutational analysis of skeletal dysplasias (the TRPV4 mutational family).

Nemec SF, Cohn DH, Krakow D, Funari VA, Rimoin DL, Lachman RS.

Pediatr Radiol. 2012 Jan;42(1):15-23. doi: 10.1007/s00247-011-2229-6. Epub 2011 Aug 24. Review.

PMID:
21863289
17.

BMPER mutation in diaphanospondylodysostosis identified by ancestral autozygosity mapping and targeted high-throughput sequencing.

Funari VA, Krakow D, Nevarez L, Chen Z, Funari TL, Vatanavicharn N, Wilcox WR, Rimoin DL, Nelson SF, Cohn DH.

Am J Hum Genet. 2010 Oct 8;87(4):532-7. doi: 10.1016/j.ajhg.2010.08.015.

18.

Quantitative gene expression profiles in real time from expressed sequence tag databases.

Funari VA, Voevodski K, Leyfer D, Yerkes L, Cramer D, Tolan DR.

Gene Expr. 2010;14(6):321-36.

19.

Disease gene characterization through large-scale co-expression analysis.

Day A, Dong J, Funari VA, Harry B, Strom SP, Cohn DH, Nelson SF.

PLoS One. 2009 Dec 31;4(12):e8491. doi: 10.1371/journal.pone.0008491.

20.

Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing.

Lee H, O'Connor BD, Merriman B, Funari VA, Homer N, Chen Z, Cohn DH, Nelson SF.

BMC Genomics. 2009 Dec 31;10:646. doi: 10.1186/1471-2164-10-646.

21.

Ciliary abnormalities due to defects in the retrograde transport protein DYNC2H1 in short-rib polydactyly syndrome.

Merrill AE, Merriman B, Farrington-Rock C, Camacho N, Sebald ET, Funari VA, Schibler MJ, Firestein MH, Cohn ZA, Priore MA, Thompson AK, Rimoin DL, Nelson SF, Cohn DH, Krakow D.

Am J Hum Genet. 2009 Apr;84(4):542-9. doi: 10.1016/j.ajhg.2009.03.015.

22.

A recessive skeletal dysplasia, SEMD aggrecan type, results from a missense mutation affecting the C-type lectin domain of aggrecan.

Tompson SW, Merriman B, Funari VA, Fresquet M, Lachman RS, Rimoin DL, Nelson SF, Briggs MD, Cohn DH, Krakow D.

Am J Hum Genet. 2009 Jan;84(1):72-9. doi: 10.1016/j.ajhg.2008.12.001. Epub 2008 Dec 24.

23.

Gain-of-function mutations in TRPV4 cause autosomal dominant brachyolmia.

Rock MJ, Prenen J, Funari VA, Funari TL, Merriman B, Nelson SF, Lachman RS, Wilcox WR, Reyno S, Quadrelli R, Vaglio A, Owsianik G, Janssens A, Voets T, Ikegawa S, Nagai T, Rimoin DL, Nilius B, Cohn DH.

Nat Genet. 2008 Aug;40(8):999-1003. doi: 10.1038/ng.166. Epub 2008 Jun 29.

24.

Cartilage-selective genes identified in genome-scale analysis of non-cartilage and cartilage gene expression.

Funari VA, Day A, Krakow D, Cohn ZA, Chen Z, Nelson SF, Cohn DH.

BMC Genomics. 2007 Jun 12;8:165.

25.

Fructose metabolism in the cerebellum.

Funari VA, Crandall JE, Tolan DR.

Cerebellum. 2007;6(2):130-40. Review.

PMID:
17510913
26.

Genes required for fructose metabolism are expressed in Purkinje cells in the cerebellum.

Funari VA, Herrera VL, Freeman D, Tolan DR.

Brain Res Mol Brain Res. 2005 Dec 14;142(2):115-22. Epub 2005 Nov 2.

PMID:
16266770
27.

Elevated interleukin-6 levels in peritoneal fluid of patients with pelvic pathology.

Buyalos RP, Funari VA, Azziz R, Watson JM, Martinez-Maza O.

Fertil Steril. 1992 Aug;58(2):302-6.

PMID:
1633894

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