Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 91

1.

Ubiquitous distribution of fluorescent protein in muscles of four species and two subspecies of eel (genus Anguilla).

Funahashi A, Itakura T, Hassanin Abeer AI, Komatsu M, Hayashi S, Kaminishi Y.

J Genet. 2017 Mar;96(1):127-133.

2.

Editorial: Quantitative Biology: Dynamics of Living Systems.

Hiroi N, Draviam VM, Funahashi A.

Front Physiol. 2016 Jun 2;7:196. doi: 10.3389/fphys.2016.00196. eCollection 2016. No abstract available.

3.

Detection of Temperature Difference in Neuronal Cells.

Tanimoto R, Hiraiwa T, Nakai Y, Shindo Y, Oka K, Hiroi N, Funahashi A.

Sci Rep. 2016 Mar 1;6:22071. doi: 10.1038/srep22071.

4.

Simulation technology and its application in Systems Biology.

Funahashi A, Hiroi N.

Nihon Yakurigaku Zasshi. 2016 Feb;147(2):101-6. doi: 10.1254/fpj.147.101. Review. Japanese. No abstract available.

PMID:
26860650
5.

Eel green fluorescent protein is associated with resistance to oxidative stress.

Funahashi A, Komatsu M, Furukawa T, Yoshizono Y, Yoshizono H, Orikawa Y, Takumi S, Shiozaki K, Hayashi S, Kaminishi Y, Itakura T.

Comp Biochem Physiol C Toxicol Pharmacol. 2016 Mar-Apr;181-182:35-9. doi: 10.1016/j.cbpc.2015.12.009. Epub 2015 Dec 30.

PMID:
26746389
6.

Lysosomal localization of Japanese medaka (Oryzias latipes) Neu1 sialidase and its highly conserved enzymatic profiles with human.

Ryuzono S, Takase R, Oishi K, Ikeda A, Chigwechokha PK, Funahashi A, Komatsu M, Miyagi T, Shiozaki K.

Gene. 2016 Jan 10;575(2 Pt 2):513-523. doi: 10.1016/j.gene.2015.09.028. Epub 2015 Oct 8.

PMID:
26432003
7.

The principles of whole-cell modeling.

Karr JR, Takahashi K, Funahashi A.

Curr Opin Microbiol. 2015 Oct;27:18-24. doi: 10.1016/j.mib.2015.06.004. Epub 2015 Jun 24. Review.

PMID:
26115539
8.

Acceleration of discrete stochastic biochemical simulation using GPGPU.

Sumiyoshi K, Hirata K, Hiroi N, Funahashi A.

Front Physiol. 2015 Feb 13;6:42. doi: 10.3389/fphys.2015.00042. eCollection 2015.

9.

High-speed microscopy with an electrically tunable lens to image the dynamics of in vivo molecular complexes.

Nakai Y, Ozeki M, Hiraiwa T, Tanimoto R, Funahashi A, Hiroi N, Taniguchi A, Nonaka S, Boilot V, Shrestha R, Clark J, Tamura N, Draviam VM, Oku H.

Rev Sci Instrum. 2015 Jan;86(1):013707. doi: 10.1063/1.4905330.

PMID:
25638090
10.

A proteomic study of mitotic phase-specific interactors of EB1 reveals a role for SXIP-mediated protein interactions in anaphase onset.

Tamura N, Simon JE, Nayak A, Shenoy R, Hiroi N, Boilot V, Funahashi A, Draviam VM.

Biol Open. 2015 Jan 16;4(2):155-69. doi: 10.1242/bio.201410413.

11.

Modeling and simulation using CellDesigner.

Matsuoka Y, Funahashi A, Ghosh S, Kitano H.

Methods Mol Biol. 2014;1164:121-45. doi: 10.1007/978-1-4939-0805-9_11.

PMID:
24927840
12.

Assessing uncertainty in model parameters based on sparse and noisy experimental data.

Hiroi N, Swat M, Funahashi A.

Front Physiol. 2014 Apr 4;5:128. doi: 10.3389/fphys.2014.00128. eCollection 2014.

13.

In vivo oriented modeling with consideration of intracellular crowding.

Hiroi N, Iba K, Tabira A, Okuhara T, Kubojima T, Hiraiwa T, Kobayashi TJ, Oka K, Funahashi A.

Conf Proc IEEE Eng Med Biol Soc. 2013;2013:2716-9. doi: 10.1109/EMBC.2013.6610101.

PMID:
24110288
14.

Automated tracking of mitotic spindle pole positions shows that LGN is required for spindle rotation but not orientation maintenance.

Corrigan AM, Shrestha RL, Zulkipli I, Hiroi N, Liu Y, Tamura N, Yang B, Patel J, Funahashi A, Donald A, Draviam VM.

Cell Cycle. 2013 Aug 15;12(16):2643-55. doi: 10.4161/cc.25671. Epub 2013 Jul 16.

15.

Brief report: the smiles of a child with autism spectrum disorder during an animal-assisted activity may facilitate social positive behaviors--quantitative analysis with smile-detecting interface.

Funahashi A, Gruebler A, Aoki T, Kadone H, Suzuki K.

J Autism Dev Disord. 2014 Mar;44(3):685-93. doi: 10.1007/s10803-013-1898-4.

PMID:
23893100
16.

The systems biology simulation core algorithm.

Keller R, Dörr A, Tabira A, Funahashi A, Ziller MJ, Adams R, Rodriguez N, Le Novère N, Hiroi N, Planatscher H, Zell A, Dräger A.

BMC Syst Biol. 2013 Jul 5;7:55. doi: 10.1186/1752-0509-7-55.

17.

LibSBMLSim: a reference implementation of fully functional SBML simulator.

Takizawa H, Nakamura K, Tabira A, Chikahara Y, Matsui T, Hiroi N, Funahashi A.

Bioinformatics. 2013 Jun 1;29(11):1474-6. doi: 10.1093/bioinformatics/btt157. Epub 2013 Apr 5.

18.

Meeting report of the International Workshop on Quantitative Biology 2012: mesoscopic and microscopic worlds meet.

Draviam VM, Funahashi A, Hiroi N, Kimura A, Kobayashi TJ.

Front Physiol. 2013 Jan 11;3:479. doi: 10.3389/fphys.2012.00479. eCollection 2012. No abstract available.

19.

Mathematical modeling of sustainable synaptogenesis by repetitive stimuli suggests signaling mechanisms in vivo.

Takizawa H, Hiroi N, Funahashi A.

PLoS One. 2012;7(12):e51000. doi: 10.1371/journal.pone.0051000. Epub 2012 Dec 20.

20.

Physiological Intracellular Crowdedness is Defined by the Perimeter-to-Area Ratio of Sub-Cellular Compartments.

Hiroi N, Okuhara T, Kubojima T, Iba K, Tabira A, Yamashita S, Okada Y, Kobayashi TJ, Funahashi A.

Front Physiol. 2012 Jul 23;3:293. doi: 10.3389/fphys.2012.00293. eCollection 2012.

21.

From microscopy data to in silico environments for in vivo-oriented simulations.

Hiroi1 N, Klann M, Iba K, Heras Ciechomski Pd, Yamashita S, Tabira A, Okuhara T, Kubojima T, Okada Y, Oka K, Mange R, Unger M, Funahashi A, Koeppl H.

EURASIP J Bioinform Syst Biol. 2012 Jun 26;2012:7.

22.

Software support for SBGN maps: SBGN-ML and LibSBGN.

van Iersel MP, Villéger AC, Czauderna T, Boyd SE, Bergmann FT, Luna A, Demir E, Sorokin A, Dogrusoz U, Matsuoka Y, Funahashi A, Aladjem MI, Mi H, Moodie SL, Kitano H, Le Novère N, Schreiber F.

Bioinformatics. 2012 Aug 1;28(15):2016-21. Epub 2012 May 10.

23.

[Relationship between performance rating and risk of low back pain in manufacturing line workers].

Higuchi Y, Funahashi A, Izumi H, Kumashinro M.

J UOEH. 2012 Mar 1;34(1):47-55. Japanese.

PMID:
22428458
24.

Cytochrome P450 1C1 complementary DNA cloning, sequence analysis and constitutive expression induced by benzo-a-pyrene in Nile tilapia (Oreochromis niloticus).

Hassanin AA, Kaminishi Y, Funahashi A, Itakura T.

Aquat Toxicol. 2012 Mar;109:17-24. doi: 10.1016/j.aquatox.2011.11.012. Epub 2011 Dec 1.

PMID:
22204985
25.

BioPAX support in CellDesigner.

Mi H, Muruganujan A, Demir E, Matsuoka Y, Funahashi A, Kitano H, Thomas PD.

Bioinformatics. 2011 Dec 15;27(24):3437-8. doi: 10.1093/bioinformatics/btr586. Epub 2011 Oct 21.

26.

Physiological environment induces quick response - slow exhaustion reactions.

Hiroi N, Lu J, Iba K, Tabira A, Yamashita S, Okada Y, Flamm C, Oka K, Köhler G, Funahashi A.

Front Physiol. 2011 Sep 21;2:50. doi: 10.3389/fphys.2011.00050. eCollection 2011.

27.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.

Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T.

J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8.

28.

The Systems Biology Graphical Notation.

Le Novère N, Hucka M, Mi H, Moodie S, Schreiber F, Sorokin A, Demir E, Wegner K, Aladjem MI, Wimalaratne SM, Bergman FT, Gauges R, Ghazal P, Kawaji H, Li L, Matsuoka Y, Villéger A, Boyd SE, Calzone L, Courtot M, Dogrusoz U, Freeman TC, Funahashi A, Ghosh S, Jouraku A, Kim S, Kolpakov F, Luna A, Sahle S, Schmidt E, Watterson S, Wu G, Goryanin I, Kell DB, Sander C, Sauro H, Snoep JL, Kohn K, Kitano H.

Nat Biotechnol. 2009 Aug;27(8):735-41. doi: 10.1038/nbt.1558. Epub 2009 Aug 7. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.

PMID:
19668183
29.

Limitations on work and attendance rates after employees with cancer returned to work at a single manufacturing company in Japan.

Ohguri T, Narai R, Funahashi A, Nishiura C, Yamashita T, Yarita K, Korogi Y.

J Occup Health. 2009;51(3):267-72. Epub 2009 Mar 19.

30.

Psycho-educational Horseback Riding to Facilitate Communication Ability of Children with Pervasive Developmental Disorders.

Keino H, Funahashi A, Keino H, Miwa C, Hosokawa M, Hayashi Y, Kawakita K.

J Equine Sci. 2009;20(4):79-88. doi: 10.1294/jes.20.79. Epub 2010 Jan 19.

31.

The effect of smoking prevalence at worksites on individual cessation behavior.

Nishiura C, Narai R, Ohguri T, Funahashi A, Yarita K, Hashimoto H.

J Occup Health. 2009;51(1):48-56. Epub 2008 Dec 5.

32.

Integration of CellDesigner and SABIO-RK.

Funahashi A, Jouraku A, Matsuoka Y, Kitano H.

In Silico Biol. 2007;7(2 Suppl):S81-90.

PMID:
17822394
33.

Deduction of intracellular sub-systems from a topological description of the network.

Nordling TE, Hiroi N, Funahashi A, Kitano H.

Mol Biosyst. 2007 Aug;3(8):523-9. Epub 2007 Jun 27.

PMID:
17639126
34.
35.

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.

Hucka M, Finney A, Bornstein BJ, Keating SM, Shapiro BE, Matthews J, Kovitz BL, Schilstra MJ, Funahashi A, Doyle JC, Kitano H.

Syst Biol (Stevenage). 2004 Jun;1(1):41-53. Review.

PMID:
17052114
36.

A comprehensive pathway map of epidermal growth factor receptor signaling.

Oda K, Matsuoka Y, Funahashi A, Kitano H.

Mol Syst Biol. 2005;1:2005.0010. Epub 2005 May 25.

37.
38.

Using process diagrams for the graphical representation of biological networks.

Kitano H, Funahashi A, Matsuoka Y, Oda K.

Nat Biotechnol. 2005 Aug;23(8):961-6.

PMID:
16082367
39.

[The ERATO Systems Biology Workbench and Systems Biology Markup Language: an integrated environment and standardization for systems biology].

Funahashi A.

Tanpakushitsu Kakusan Koso. 2003 Jun;48(7):810-6. Review. Japanese. No abstract available.

PMID:
12795194
40.
41.

[Comparison of the effects of accelerated heavy ions and X-rays on the development of rat brain].

Inouye M, Funahashi A, Nakamura E, Takahashi S, Kubota Y, Takagishi Y, Hayasaka S, Murata Y.

Biol Sci Space. 1998 Nov;12(3):188-9. Japanese. No abstract available.

PMID:
12512525
42.

Vocal cord closure pressure during volitional swallow and other voluntary tasks.

Shaker R, Dua KS, Ren J, Xie P, Funahashi A, Schapira RM.

Dysphagia. 2002 Winter;17(1):13-8.

PMID:
11820382
43.

Abnormal development of serotonin nerve fibers in the visual cortex in rats with methylazoxymethanol-induced microcephaly.

Funahashi A, Fujimiya M, Kimura H, Maeda T.

Acta Neuropathol. 1998 Jan;95(1):5-14.

PMID:
9452817
44.
45.

The value of the forced expiratory time in the physical diagnosis of obstructive airways disease.

Schapira RM, Schapira MM, Funahashi A, McAuliffe TL, Varkey B.

JAMA. 1993 Aug 11;270(6):731-6.

PMID:
8336375
46.

Gamma-radiation produces abnormal Bergmann fibers and ectopic granule cells in mouse cerebellar cortex.

Inouye M, Hayasaka S, Funahashi A, Yamamura H.

J Radiat Res. 1992 Dec;33(4):275-81.

47.
48.

Phenotype and function of natural killer cells in patients with bronchogenic carcinoma.

LeFever AV, Funahashi A.

Cancer Res. 1991 Oct 15;51(20):5596-601.

49.

Lymphokine-activated killer cell activity in lung cancer.

LeFever A, Funahashi A.

Chest. 1991 Feb;99(2):292-7.

PMID:
1989785
50.

Supplemental Content

Loading ...
Support Center