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Items: 1 to 50 of 57

1.

Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour.

Palermo CN, Fulthorpe RR, Saati R, Short SM.

Viruses. 2019 Aug 28;11(9). pii: E792. doi: 10.3390/v11090792.

2.

Plantibacter flavus, Curtobacterium herbarum, Paenibacillus taichungensis, and Rhizobium selenitireducens Endophytes Provide Host-Specific Growth Promotion of Arabidopsis thaliana, Basil, Lettuce, and Bok Choy Plants.

Mayer E, Dörr de Quadros P, Fulthorpe R.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e00383-19. doi: 10.1128/AEM.00383-19. Print 2019 Oct 1.

PMID:
31350315
3.

Endophytic Bacterial Community Structure and Function of Herbaceous Plants From Petroleum Hydrocarbon Contaminated and Non-contaminated Sites.

Lumactud R, Fulthorpe RR.

Front Microbiol. 2018 Aug 23;9:1926. doi: 10.3389/fmicb.2018.01926. eCollection 2018.

4.

Draft Genome Sequence of Bacillus sp. Strain UFRGS-B20, a Hydrocarbon Degrader.

Dörr de Quadros P, Fulthorpe R, Saati R, Cerqueira V, Bento FM.

Genome Announc. 2018 Feb 22;6(8). pii: e00052-18. doi: 10.1128/genomeA.00052-18.

5.

Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 May 25;5(21). pii: e00434-17. doi: 10.1128/genomeA.00434-17.

6.

Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 Apr 27;5(17). pii: e00276-17. doi: 10.1128/genomeA.00276-17.

7.

Experimental sulfate amendment alters peatland bacterial community structure.

Strickman RJS, Fulthorpe RR, Coleman Wasik JK, Engstrom DR, Mitchell CPJ.

Sci Total Environ. 2016 Oct 1;566-567:1289-1296. doi: 10.1016/j.scitotenv.2016.05.189. Epub 2016 Jun 3.

PMID:
27267720
8.

Bacterial Endophytes Isolated from Plants in Natural Oil Seep Soils with Chronic Hydrocarbon Contamination.

Lumactud R, Shen SY, Lau M, Fulthorpe R.

Front Microbiol. 2016 May 24;7:755. doi: 10.3389/fmicb.2016.00755. eCollection 2016.

9.

The microbiomes and metagenomes of forest biochars.

Noyce GL, Winsborough C, Fulthorpe R, Basiliko N.

Sci Rep. 2016 May 23;6:26425. doi: 10.1038/srep26425.

10.

PacBio SMRT assembly of a complex multi-replicon genome reveals chlorocatechol degradative operon in a region of genome plasticity.

Ricker N, Shen SY, Goordial J, Jin S, Fulthorpe RR.

Gene. 2016 Jul 25;586(2):239-47. doi: 10.1016/j.gene.2016.04.018. Epub 2016 Apr 7.

PMID:
27063562
11.

Seasonal variation of bacterial endophytes in urban trees.

Shen SY, Fulthorpe R.

Front Microbiol. 2015 May 19;6:427. doi: 10.3389/fmicb.2015.00427. eCollection 2015.

12.

Rapid degradation of Deepwater Horizon spilled oil by indigenous microbial communities in Louisiana saltmarsh sediments.

Mahmoudi N, Porter TM, Zimmerman AR, Fulthorpe RR, Kasozi GN, Silliman BR, Slater GF.

Environ Sci Technol. 2013;47(23):13303-12. doi: 10.1021/es4036072. Epub 2013 Nov 19.

PMID:
24219093
13.

Probing the functional diversity of global pristine soil communities with 3-chlorobenzoate reveals that communities of generalists dominate catabolic transformation.

Rhodes AN, Fulthorpe RR, Tiedje JM.

Appl Environ Microbiol. 2013 Nov;79(22):6932-40. doi: 10.1128/AEM.01905-13. Epub 2013 Aug 30.

14.

Phylogeny and organization of recombinase in trio (RIT) elements.

Ricker N, Qian H, Fulthorpe RR.

Plasmid. 2013 Sep;70(2):226-39. doi: 10.1016/j.plasmid.2013.04.003. Epub 2013 Apr 28.

PMID:
23628708
15.

Assessing microbial carbon sources and potential PAH degradation using natural abundance 14C analysis.

Mahmoudi N, Fulthorpe RR, Burns L, Mancini S, Slater GF.

Environ Pollut. 2013 Apr;175:125-30. doi: 10.1016/j.envpol.2012.12.020. Epub 2013 Jan 30.

PMID:
23376543
16.

Land-use change and soil type are drivers of fungal and archaeal communities in the Pampa biome.

Lupatini M, Jacques RJ, Antoniolli ZI, Suleiman AK, Fulthorpe RR, Roesch LF.

World J Microbiol Biotechnol. 2013 Feb;29(2):223-33. doi: 10.1007/s11274-012-1174-3. Epub 2012 Sep 29.

PMID:
23054698
17.

Changes in bacterial community structure after exposure to silver nanoparticles in natural waters.

Das P, Williams CJ, Fulthorpe RR, Hoque ME, Metcalfe CD, Xenopoulos MA.

Environ Sci Technol. 2012 Aug 21;46(16):9120-8. doi: 10.1021/es3019918. Epub 2012 Aug 9.

PMID:
22834484
18.

The limitations of draft assemblies for understanding prokaryotic adaptation and evolution.

Ricker N, Qian H, Fulthorpe RR.

Genomics. 2012 Sep;100(3):167-75. doi: 10.1016/j.ygeno.2012.06.009. Epub 2012 Jun 27.

19.

Microbial diversity, tolerance, and biodegradation potential of urban wetlands with different input regimes.

Gilbert N, Fulthorpe R, Kirkwood AE.

Can J Microbiol. 2012 Jul;58(7):887-97. doi: 10.1139/w2012-066. Epub 2012 Jun 20.

PMID:
22716132
20.

Low sequencing efforts bias analyses of shared taxa in microbial communities.

Lemos LN, Fulthorpe RR, Roesch LF.

Folia Microbiol (Praha). 2012 Sep;57(5):409-13. doi: 10.1007/s12223-012-0155-0. Epub 2012 May 5.

PMID:
22562492
21.

Bacterial community dynamics in the hyporheic zone of an intermittent stream.

Febria CM, Beddoes P, Fulthorpe RR, Williams DD.

ISME J. 2012 May;6(5):1078-88. doi: 10.1038/ismej.2011.173. Epub 2011 Dec 8.

22.

Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soils.

Mahmoudi N, Slater GF, Fulthorpe RR.

Can J Microbiol. 2011 Aug;57(8):623-8. doi: 10.1139/w11-049. Epub 2011 Aug 4.

PMID:
21815819
23.

Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014. Epub 2011 Mar 30.

24.

Composition of activated sludge settling and planktonic bacterial communities treating industrial effluent and their correlation to settling problems.

Nadarajah N, Allen DG, Fulthorpe RR.

Appl Microbiol Biotechnol. 2010 Nov;88(5):1205-14. doi: 10.1007/s00253-010-2829-3. Epub 2010 Aug 25.

PMID:
20737270
25.

Distantly sampled soils carry few species in common.

Fulthorpe RR, Roesch LF, Riva A, Triplett EW.

ISME J. 2008 Sep;2(9):901-10. doi: 10.1038/ismej.2008.55. Epub 2008 Jun 5.

PMID:
18528413
26.

Pyrosequencing enumerates and contrasts soil microbial diversity.

Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, Kent AD, Daroub SH, Camargo FA, Farmerie WG, Triplett EW.

ISME J. 2007 Aug;1(4):283-90. Epub 2007 Jul 5.

27.

Role of high molecular mass organics in colour formation during biological treatment of pulp and paper wastewater.

Milestone CB, Stuthridge TR, Fulthorpe RR.

Water Sci Technol. 2007;55(6):191-8.

PMID:
17486851
28.

Effects of transient temperature conditions on the divergence of activated sludge bacterial community structure and function.

Nadarajah N, Allen DG, Fulthorpe RR.

Water Res. 2007 Jun;41(12):2563-71. Epub 2007 Apr 19.

PMID:
17448516
29.

High-temperature biotrickling filtration of hydrogen sulphide.

Datta I, Fulthorpe RR, Sharma S, Allen DG.

Appl Microbiol Biotechnol. 2007 Mar;74(3):708-16. Epub 2007 Jan 11.

PMID:
17216465
30.

Effect of chemical and physical parameters on a pulp mill biotreatment bacterial community.

Gilbride KA, Frigon D, Cesnik A, Gawat J, Fulthorpe RR.

Water Res. 2006 Feb;40(4):775-87. Epub 2006 Jan 19.

PMID:
16427115
31.

The effects of cyanobacterial exudates on bacterial growth and biodegradation of organic contaminants.

Kirkwood AE, Nalewajko C, Fulthorpe RR.

Microb Ecol. 2006 Jan;51(1):4-12. Epub 2006 Jan 1.

PMID:
16382284
32.

The impacts of cyanobacteria on pulp-and-paper wastewater toxicity and biodegradation of wastewater contaminants.

Kirkwood AE, Nalewajko C, Fulthorpe RR.

Can J Microbiol. 2005 Jul;51(7):531-40.

PMID:
16175201
33.

Two kinds of chlorocatechol 1,2-dioxygenase from 2,4-dichlorophenoxyacetate-degrading Sphingomonas sp. strain TFD44.

Lang GH, Ogawa N, Tanaka Y, Fujii T, Fulthorpe RR, Fukuda M, Miyashita K.

Biochem Biophys Res Commun. 2005 Jul 15;332(4):941-8.

PMID:
15916749
34.
35.

The formation of colour during biological treatment of pulp and paper wastewater.

Milestone CB, Fulthorpe RR, Stuthridge TR.

Water Sci Technol. 2004;50(3):87-94.

PMID:
15461402
36.

DNA microarrays for detecting endocrine-disrupting compounds.

Francois E, Wang DY, Fulthorpe R, Liss SN, Edwards EA.

Biotechnol Adv. 2003 Dec;22(1-2):17-26. Review.

PMID:
14623040
37.
38.
39.

Monitoring gene expression in mixed microbial communities by using DNA microarrays.

Dennis P, Edwards EA, Liss SN, Fulthorpe R.

Appl Environ Microbiol. 2003 Feb;69(2):769-78.

40.

Treatment of volatile organic compounds in a biotrickling filter under thermophilic conditions.

Kong Z, Farhana L, Fulthorpe RR, Allen DG.

Environ Sci Technol. 2001 Nov 1;35(21):4347-52.

PMID:
11718354
41.

The occurrence of cyanobacteria in pulp and paper waste-treatment systems.

Kirkwood AE, Nalewajko C, Fulthorpe RR.

Can J Microbiol. 2001 Aug;47(8):761-6.

PMID:
11575503
42.
43.

Monoclonal antibodies to 2,4-dichlorophenol hydroxylase as probes for the 2,4-D-degradative phenotype.

Farhana L, Fulthorpe RR, Harbour C, New PB.

Can J Microbiol. 1998 Oct;44(10):920-8.

PMID:
9933912
44.

Evidence for interspecies gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders.

McGowan C, Fulthorpe R, Wright A, Tiedje JM.

Appl Environ Microbiol. 1998 Oct;64(10):4089-92.

45.

Molecular analysis of bacterial isolates and total community DNA from kraft pulp mill effluent treatment systems.

Fortin N, Fulthorpe RR, Allen DG, Greer CW.

Can J Microbiol. 1998 Jun;44(6):537-46.

PMID:
9734304
46.

Amplification of putative chlorocatechol dioxygenase gene fragments from alpha- and beta-Proteobacteria.

Leander M, Vallaeys T, Fulthorpe R.

Can J Microbiol. 1998 May;44(5):482-6.

PMID:
9699302
47.

High levels of endemicity of 3-chlorobenzoate-degrading soil bacteria.

Fulthorpe RR, Rhodes AN, Tiedje JM.

Appl Environ Microbiol. 1998 May;64(5):1620-7.

48.

Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria.

Kamagata Y, Fulthorpe RR, Tamura K, Takami H, Forney LJ, Tiedje JM.

Appl Environ Microbiol. 1997 Jun;63(6):2266-72.

49.

Degradation of 2,4-dichlorophenoxyacetic acid by haloalkaliphilic bacteria.

Maltseva O, McGowan C, Fulthorpe R, Oriel P.

Microbiology. 1996 May;142 ( Pt 5):1115-22.

PMID:
8704953
50.

Pristine soils mineralize 3-chlorobenzoate and 2,4-dichlorophenoxyacetate via different microbial populations.

Fulthorpe RR, Rhodes AN, Tiedje JM.

Appl Environ Microbiol. 1996 Apr;62(4):1159-66.

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