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Items: 1 to 50 of 191

1.

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment.

Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H.

Genes (Basel). 2019 Jul 17;10(7). pii: E544. doi: 10.3390/genes10070544.

2.

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.

Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM; NISC Comparative Sequencing Program, Mullikin JC, Burgess SM.

Sci Adv. 2019 Jun 26;5(6):eaav0547. doi: 10.1126/sciadv.aav0547. eCollection 2019 Jun.

3.

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.

Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T.

Nat Commun. 2019 Apr 12;10(1):1702. doi: 10.1038/s41467-019-09575-2.

4.

Note to: Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution.

Sekigami Y, Kobayashi T, Omi A, Nishitsuji K, Ikuta T, Fujiyama A, Satoh N, Saiga H.

Zoological Lett. 2019 Feb 27;5:8. doi: 10.1186/s40851-019-0121-7. eCollection 2019.

5.

High-quality genome assembly of the silkworm, Bombyx mori.

Kawamoto M, Jouraku A, Toyoda A, Yokoi K, Minakuchi Y, Katsuma S, Fujiyama A, Kiuchi T, Yamamoto K, Shimada T.

Insect Biochem Mol Biol. 2019 Apr;107:53-62. doi: 10.1016/j.ibmb.2019.02.002. Epub 2019 Feb 23.

6.

Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori.

Kobayashi Y, Nojima Y, Sakamoto T, Iwabuchi K, Nakazato T, Bono H, Toyoda A, Fujiyama A, Kanost MR, Tabunoki H.

Sci Rep. 2019 Feb 18;9(1):2170. doi: 10.1038/s41598-018-38384-8.

7.

Androgen and Oestrogen Affect the Expression of Long Non-Coding RNAs During Phallus Development in a Marsupial.

Chen Y, Kuroki Y, Shaw G, Pask AJ, Yu H, Toyoda A, Fujiyama A, Renfree MB.

Noncoding RNA. 2018 Dec 30;5(1). pii: E3. doi: 10.3390/ncrna5010003.

8.

Effects of androgen and oestrogen on the IGF pathways controlling phallus growth.

Chen Y, Yu H, Pask AJ, Fujiyama A, Suzuki Y, Sugano S, Shaw G, Renfree M.

Reproduction. 2018 Oct 1. pii: REP-18-0416.R1. doi: 10.1530/REP-18-0416. [Epub ahead of print]

PMID:
30390614
9.

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species.

Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M.

Commun Biol. 2018 Oct 5;1:162. doi: 10.1038/s42003-018-0171-y. eCollection 2018.

10.

Anisogamy evolved with a reduced sex-determining region in volvocine green algae.

Hamaji T, Kawai-Toyooka H, Uchimura H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Miyagishima SY, Umen JG, Nozaki H.

Commun Biol. 2018 Mar 8;1:17. doi: 10.1038/s42003-018-0019-5. eCollection 2018.

11.

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians.

An Y, Kawaguchi A, Zhao C, Toyoda A, Sharifi-Zarchi A, Mousavi SA, Bagherzadeh R, Inoue T, Ogino H, Fujiyama A, Chitsaz H, Baharvand H, Agata K.

Zoological Lett. 2018 Aug 29;4:24. doi: 10.1186/s40851-018-0102-2. eCollection 2018.

12.

Functional divergence of a heterochromatin-binding protein during stickleback speciation.

Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.

Mol Ecol. 2019 Mar;28(6):1563-1578. doi: 10.1111/mec.14841. Epub 2018 Sep 7.

PMID:
30117211
13.

Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae.

Gaouda H, Hamaji T, Yamamoto K, Kawai-Toyooka H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Nozaki H, Smith DR.

Genome Biol Evol. 2018 Sep 1;10(9):2248-2254. doi: 10.1093/gbe/evy175.

14.

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.

15.

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression.

Ravinet M, Yoshida K, Shigenobu S, Toyoda A, Fujiyama A, Kitano J.

PLoS Genet. 2018 May 23;14(5):e1007358. doi: 10.1371/journal.pgen.1007358. eCollection 2018 May.

16.

Hormone-responsive genes in the SHH and WNT/β-catenin signaling pathways influence urethral closure and phallus growth.

Chen Y, Yu H, Pask AJ, Fujiyama A, Suzuki Y, Sugano S, Shaw G, Renfree MB.

Biol Reprod. 2018 Oct 1;99(4):806-816. doi: 10.1093/biolre/ioy117.

PMID:
29767687
17.

Internalization of CD239 highly expressed in breast cancer cells: a potential antigen for antibody-drug conjugates.

Kikkawa Y, Enomoto-Okawa Y, Fujiyama A, Fukuhara T, Harashima N, Sugawara Y, Negishi Y, Katagiri F, Hozumi K, Nomizu M, Ito Y.

Sci Rep. 2018 Apr 26;8(1):6612. doi: 10.1038/s41598-018-24961-4.

18.

Construction of a simple evaluation system for the intestinal absorption of an orally administered medicine using Bombyx mori larvae.

Ichino F, Bono H, Nakazato T, Toyoda A, Fujiyama A, Iwabuchi K, Sato R, Tabunoki H.

Drug Discov Ther. 2018;12(1):7-15. doi: 10.5582/ddt.2018.01004.

19.

Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy.

Ishiura H, Doi K, Mitsui J, Yoshimura J, Matsukawa MK, Fujiyama A, Toyoshima Y, Kakita A, Takahashi H, Suzuki Y, Sugano S, Qu W, Ichikawa K, Yurino H, Higasa K, Shibata S, Mitsue A, Tanaka M, Ichikawa Y, Takahashi Y, Date H, Matsukawa T, Kanda J, Nakamoto FK, Higashihara M, Abe K, Koike R, Sasagawa M, Kuroha Y, Hasegawa N, Kanesawa N, Kondo T, Hitomi T, Tada M, Takano H, Saito Y, Sanpei K, Onodera O, Nishizawa M, Nakamura M, Yasuda T, Sakiyama Y, Otsuka M, Ueki A, Kaida KI, Shimizu J, Hanajima R, Hayashi T, Terao Y, Inomata-Terada S, Hamada M, Shirota Y, Kubota A, Ugawa Y, Koh K, Takiyama Y, Ohsawa-Yoshida N, Ishiura S, Yamasaki R, Tamaoka A, Akiyama H, Otsuki T, Sano A, Ikeda A, Goto J, Morishita S, Tsuji S.

Nat Genet. 2018 Apr;50(4):581-590. doi: 10.1038/s41588-018-0067-2. Epub 2018 Mar 5.

PMID:
29507423
20.

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding.

Minami A, Yano K, Gamuyao R, Nagai K, Kuroha T, Ayano M, Nakamori M, Koike M, Kondo Y, Niimi Y, Kuwata K, Suzuki T, Higashiyama T, Takebayashi Y, Kojima M, Sakakibara H, Toyoda A, Fujiyama A, Kurata N, Ashikari M, Reuscher S.

Plant Physiol. 2018 Apr;176(4):3081-3102. doi: 10.1104/pp.17.00858. Epub 2018 Feb 23.

21.

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach.

Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y.

Front Genet. 2017 Dec 5;8:180. doi: 10.3389/fgene.2017.00180. eCollection 2017.

22.

CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex.

Kanda N, Ichikawa M, Ono A, Toyoda A, Fujiyama A, Abe J, Tsuchikane Y, Nishiyama T, Sekimoto H.

Sci Rep. 2017 Dec 19;7(1):17873. doi: 10.1038/s41598-017-18251-8.

23.

Evolution of sequence-specific anti-silencing systems in Arabidopsis.

Hosaka A, Saito R, Takashima K, Sasaki T, Fu Y, Kawabe A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

Nat Commun. 2017 Dec 18;8(1):2161. doi: 10.1038/s41467-017-02150-7.

24.

Direct estimation of de novo mutation rates in a chimpanzee parent-offspring trio by ultra-deep whole genome sequencing.

Tatsumoto S, Go Y, Fukuta K, Noguchi H, Hayakawa T, Tomonaga M, Hirai H, Matsuzawa T, Agata K, Fujiyama A.

Sci Rep. 2017 Nov 1;7(1):13561. doi: 10.1038/s41598-017-13919-7.

25.

Chromosomal Aneuploidy Improves the Brewing Characteristics of Sake Yeast.

Kadowaki M, Fujimaru Y, Taguchi S, Ferdouse J, Sawada K, Kimura Y, Terasawa Y, Agrimi G, Anai T, Noguchi H, Toyoda A, Fujiyama A, Akao T, Kitagaki H.

Appl Environ Microbiol. 2017 Dec 1;83(24). pii: e01620-17. doi: 10.1128/AEM.01620-17. Print 2017 Dec 15.

26.

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

Bowman JL, Kohchi T, Yamato KT, Jenkins J, Shu S, Ishizaki K, Yamaoka S, Nishihama R, Nakamura Y, Berger F, Adam C, Aki SS, Althoff F, Araki T, Arteaga-Vazquez MA, Balasubrmanian S, Barry K, Bauer D, Boehm CR, Briginshaw L, Caballero-Perez J, Catarino B, Chen F, Chiyoda S, Chovatia M, Davies KM, Delmans M, Demura T, Dierschke T, Dolan L, Dorantes-Acosta AE, Eklund DM, Florent SN, Flores-Sandoval E, Fujiyama A, Fukuzawa H, Galik B, Grimanelli D, Grimwood J, Grossniklaus U, Hamada T, Haseloff J, Hetherington AJ, Higo A, Hirakawa Y, Hundley HN, Ikeda Y, Inoue K, Inoue SI, Ishida S, Jia Q, Kakita M, Kanazawa T, Kawai Y, Kawashima T, Kennedy M, Kinose K, Kinoshita T, Kohara Y, Koide E, Komatsu K, Kopischke S, Kubo M, Kyozuka J, Lagercrantz U, Lin SS, Lindquist E, Lipzen AM, Lu CW, De Luna E, Martienssen RA, Minamino N, Mizutani M, Mizutani M, Mochizuki N, Monte I, Mosher R, Nagasaki H, Nakagami H, Naramoto S, Nishitani K, Ohtani M, Okamoto T, Okumura M, Phillips J, Pollak B, Reinders A, Rövekamp M, Sano R, Sawa S, Schmid MW, Shirakawa M, Solano R, Spunde A, Suetsugu N, Sugano S, Sugiyama A, Sun R, Suzuki Y, Takenaka M, Takezawa D, Tomogane H, Tsuzuki M, Ueda T, Umeda M, Ward JM, Watanabe Y, Yazaki K, Yokoyama R, Yoshitake Y, Yotsui I, Zachgo S, Schmutz J.

Cell. 2017 Oct 5;171(2):287-304.e15. doi: 10.1016/j.cell.2017.09.030.

27.

Hox gene cluster of the ascidian, Halocynthia roretzi, reveals multiple ancient steps of cluster disintegration during ascidian evolution.

Sekigami Y, Kobayashi T, Omi A, Nishitsuji K, Ikuta T, Fujiyama A, Satoh N, Saiga H.

Zoological Lett. 2017 Sep 15;3:17. doi: 10.1186/s40851-017-0078-3. eCollection 2017.

28.

Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits.

Minamikawa MF, Nonaka K, Kaminuma E, Kajiya-Kanegae H, Onogi A, Goto S, Yoshioka T, Imai A, Hamada H, Hayashi T, Matsumoto S, Katayose Y, Toyoda A, Fujiyama A, Nakamura Y, Shimizu T, Iwata H.

Sci Rep. 2017 Jul 5;7(1):4721. doi: 10.1038/s41598-017-05100-x.

29.

DNApod: DNA polymorphism annotation database from next-generation sequence read archives.

Mochizuki T, Tanizawa Y, Fujisawa T, Ohta T, Nikoh N, Shimizu T, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Kaminuma E, Nakamura Y.

PLoS One. 2017 Feb 24;12(2):e0172269. doi: 10.1371/journal.pone.0172269. eCollection 2017.

30.

Gene-body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis.

Inagaki S, Takahashi M, Hosaka A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

EMBO J. 2017 Apr 13;36(8):970-980. doi: 10.15252/embj.201694983. Epub 2017 Jan 18.

31.

Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes.

Kikuchi A, Nakazato T, Ito K, Nojima Y, Yokoyama T, Iwabuchi K, Bono H, Toyoda A, Fujiyama A, Sato R, Tabunoki H.

BMC Genomics. 2017 Jan 13;18(1):83. doi: 10.1186/s12864-016-3455-y.

32.

Different contributions of local- and distant-regulatory changes to transcriptome divergence between stickleback ecotypes.

Ishikawa A, Kusakabe M, Yoshida K, Ravinet M, Makino T, Toyoda A, Fujiyama A, Kitano J.

Evolution. 2017 Mar;71(3):565-581. doi: 10.1111/evo.13175. Epub 2017 Feb 2.

PMID:
28075479
33.

Constitutive centromere-associated network controls centromere drift in vertebrate cells.

Hori T, Kagawa N, Toyoda A, Fujiyama A, Misu S, Monma N, Makino F, Ikeo K, Fukagawa T.

J Cell Biol. 2017 Jan 2;216(1):101-113. doi: 10.1083/jcb.201605001. Epub 2016 Dec 9.

34.

Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes.

Shimizu T, Kitajima A, Nonaka K, Yoshioka T, Ohta S, Goto S, Toyoda A, Fujiyama A, Mochizuki T, Nagasaki H, Kaminuma E, Nakamura Y.

PLoS One. 2016 Nov 30;11(11):e0166969. doi: 10.1371/journal.pone.0166969. eCollection 2016.

35.

Genome sequence and analysis of the Japanese morning glory Ipomoea nil.

Hoshino A, Jayakumar V, Nitasaka E, Toyoda A, Noguchi H, Itoh T, Shin-I T, Minakuchi Y, Koda Y, Nagano AJ, Yasugi M, Honjo MN, Kudoh H, Seki M, Kamiya A, Shiraki T, Carninci P, Asamizu E, Nishide H, Tanaka S, Park KI, Morita Y, Yokoyama K, Uchiyama I, Tanaka Y, Tabata S, Shinozaki K, Hayashizaki Y, Kohara Y, Suzuki Y, Sugano S, Fujiyama A, Iida S, Sakakibara Y.

Nat Commun. 2016 Nov 8;7:13295. doi: 10.1038/ncomms13295.

36.

Acetylation of histone H4 lysine 5 and 12 is required for CENP-A deposition into centromeres.

Shang WH, Hori T, Westhorpe FG, Godek KM, Toyoda A, Misu S, Monma N, Ikeo K, Carroll CW, Takami Y, Fujiyama A, Kimura H, Straight AF, Fukagawa T.

Nat Commun. 2016 Nov 4;7:13465. doi: 10.1038/ncomms13465.

37.

Genetic basis for variation in salinity tolerance between stickleback ecotypes.

Kusakabe M, Ishikawa A, Ravinet M, Yoshida K, Makino T, Toyoda A, Fujiyama A, Kitano J.

Mol Ecol. 2017 Jan;26(1):304-319. doi: 10.1111/mec.13875. Epub 2016 Oct 27.

PMID:
27706866
38.

Genome evolution in the allotetraploid frog Xenopus laevis.

Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.

Nature. 2016 Oct 20;538(7625):336-343. doi: 10.1038/nature19840.

39.

Single-neuron and genetic correlates of autistic behavior in macaque.

Yoshida K, Go Y, Kushima I, Toyoda A, Fujiyama A, Imai H, Saito N, Iriki A, Ozaki N, Isoda M.

Sci Adv. 2016 Sep 21;2(9):e1600558. eCollection 2016 Sep.

40.

Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.

Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, Sagara H, Miura T, Yokobori SI, Miyagawa K, Suzuki Y, Kubo T, Oyama M, Kohara Y, Fujiyama A, Arakawa K, Katayama T, Toyoda A, Kunieda T.

Nat Commun. 2016 Sep 20;7:12808. doi: 10.1038/ncomms12808.

41.

Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.

Nakai R, Fujisawa T, Nakamura Y, Nishide H, Uchiyama I, Baba T, Toyoda A, Fujiyama A, Naganuma T, Niki H.

Genome Announc. 2016 Jun 30;4(3). pii: e00616-16. doi: 10.1128/genomeA.00616-16.

42.

The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity.

Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ.

Nat Commun. 2016 Apr 22;7:11370. doi: 10.1038/ncomms11370.

43.

Whole-genome sequencing reveals small genomic regions of introgression in an introduced crater lake population of threespine stickleback.

Yoshida K, Miyagi R, Mori S, Takahashi A, Makino T, Toyoda A, Fujiyama A, Kitano J.

Ecol Evol. 2016 Mar 2;6(7):2190-204. doi: 10.1002/ece3.2047. eCollection 2016 Apr.

44.

Sequence of the Gonium pectorale Mating Locus Reveals a Complex and Dynamic History of Changes in Volvocine Algal Mating Haplotypes.

Hamaji T, Mogi Y, Ferris PJ, Mori T, Miyagishima S, Kabeya Y, Nishimura Y, Toyoda A, Noguchi H, Fujiyama A, Olson BJ, Marriage TN, Nishii I, Umen JG, Nozaki H.

G3 (Bethesda). 2016 May 3;6(5):1179-89. doi: 10.1534/g3.115.026229.

45.

α-Helix-peptides comprising the human nuclear receptor ERRγ competitively provoke inhibition of functional homomeric dimerization.

Liu X, Nishimura H, Fujiyama A, Matsushima A, Shimohigashi M, Shimohigashi Y.

Biopolymers. 2016 Nov 4;106(4):547-54. doi: 10.1002/bip.22795.

PMID:
26662629
46.

Dynamics of Dark-Fly Genome Under Environmental Selections.

Izutsu M, Toyoda A, Fujiyama A, Agata K, Fuse N.

G3 (Bethesda). 2015 Dec 4;6(2):365-76. doi: 10.1534/g3.115.023549.

47.

Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis.

Sato K, Kuroki Y, Kumita W, Fujiyama A, Toyoda A, Kawai J, Iriki A, Sasaki E, Okano H, Sakakibara Y.

Sci Rep. 2015 Nov 20;5:16894. doi: 10.1038/srep16894.

48.

Hemichordate genomes and deuterostome origins.

Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM Jr, Sasaki A, Hikosaka-Katayama T, Sato A, Fujie M, Baughman KW, Levine J, Gonzalez P, Cameron C, Fritzenwanker JH, Pani AM, Goto H, Kanda M, Arakaki N, Yamasaki S, Qu J, Cree A, Ding Y, Dinh HH, Dugan S, Holder M, Jhangiani SN, Kovar CL, Lee SL, Lewis LR, Morton D, Nazareth LV, Okwuonu G, Santibanez J, Chen R, Richards S, Muzny DM, Gillis A, Peshkin L, Wu M, Humphreys T, Su YH, Putnam NH, Schmutz J, Fujiyama A, Yu JK, Tagawa K, Worley KC, Gibbs RA, Kirschner MW, Lowe CJ, Satoh N, Rokhsar DS, Gerhart J.

Nature. 2015 Nov 26;527(7579):459-65. doi: 10.1038/nature16150. Epub 2015 Nov 18.

49.

OryzaGenome: Genome Diversity Database of Wild Oryza Species.

Ohyanagi H, Ebata T, Huang X, Gong H, Fujita M, Mochizuki T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y, Feng Q, Wang ZX, Han B, Kurata N.

Plant Cell Physiol. 2016 Jan;57(1):e1. doi: 10.1093/pcp/pcv171. Epub 2015 Nov 16.

50.

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.

Kato H, Mori H, Maruyama F, Toyoda A, Oshima K, Endo R, Fuchu G, Miyakoshi M, Dozono A, Ohtsubo Y, Nagata Y, Hattori M, Fujiyama A, Kurokawa K, Tsuda M.

DNA Res. 2015 Dec;22(6):413-24. doi: 10.1093/dnares/dsv023. Epub 2015 Oct 1.

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