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Items: 49

1.

Purity by design: Reducing impurities in bioproduction by stimulus-controlled global translational downregulation of non-product proteins.

Bojar D, Fuhrer T, Fussenegger M.

Metab Eng. 2018 Nov 20;52:110-123. doi: 10.1016/j.ymben.2018.11.007. [Epub ahead of print]

PMID:
30468874
2.

Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria.

Sekar K, Rusconi R, Sauls JT, Fuhrer T, Noor E, Nguyen J, Fernandez VI, Buffing MF, Berney M, Jun S, Stocker R, Sauer U.

Mol Syst Biol. 2018 Nov 5;14(11):e8623. doi: 10.15252/msb.20188623.

3.

Metabolic Remodeling during Liver Regeneration.

Caldez MJ, Van Hul N, Koh HWL, Teo XQ, Fan JJ, Tan PY, Dewhurst MR, Too PG, Talib SZA, Chiang BE, Stünkel W, Yu H, Lee P, Fuhrer T, Choi H, Björklund M, Kaldis P.

Dev Cell. 2018 Nov 19;47(4):425-438.e5. doi: 10.1016/j.devcel.2018.09.020. Epub 2018 Oct 18.

PMID:
30344111
4.

Antibodies Set Boundaries Limiting Microbial Metabolite Penetration and the Resultant Mammalian Host Response.

Uchimura Y, Fuhrer T, Li H, Lawson MA, Zimmermann M, Yilmaz B, Zindel J, Ronchi F, Sorribas M, Hapfelmeier S, Ganal-Vonarburg SC, Gomez de Agüero M, McCoy KD, Sauer U, Macpherson AJ.

Immunity. 2018 Sep 18;49(3):545-559.e5. doi: 10.1016/j.immuni.2018.08.004. Epub 2018 Sep 4.

5.

Reserve Flux Capacity in the Pentose Phosphate Pathway Enables Escherichia coli's Rapid Response to Oxidative Stress.

Christodoulou D, Link H, Fuhrer T, Kochanowski K, Gerosa L, Sauer U.

Cell Syst. 2018 May 23;6(5):569-578.e7. doi: 10.1016/j.cels.2018.04.009. Epub 2018 May 9.

PMID:
29753645
6.

The thioredoxin-1 system is essential for fueling DNA synthesis during T-cell metabolic reprogramming and proliferation.

Muri J, Heer S, Matsushita M, Pohlmeier L, Tortola L, Fuhrer T, Conrad M, Zamboni N, Kisielow J, Kopf M.

Nat Commun. 2018 May 10;9(1):1851. doi: 10.1038/s41467-018-04274-w.

7.

A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication.

Piazza I, Kochanowski K, Cappelletti V, Fuhrer T, Noor E, Sauer U, Picotti P.

Cell. 2018 Jan 11;172(1-2):358-372.e23. doi: 10.1016/j.cell.2017.12.006. Epub 2018 Jan 4.

PMID:
29307493
8.

Impaired expression of GABA transporters in the human Alzheimer's disease hippocampus, subiculum, entorhinal cortex and superior temporal gyrus.

Fuhrer TE, Palpagama TH, Waldvogel HJ, Synek BJL, Turner C, Faull RL, Kwakowsky A.

Neuroscience. 2017 May 20;351:108-118. doi: 10.1016/j.neuroscience.2017.03.041. Epub 2017 Apr 4.

PMID:
28385633
9.

Maternal microbiota and antibodies as advocates of neonatal health.

Ganal-Vonarburg SC, Fuhrer T, Gomez de Agüero M.

Gut Microbes. 2017 Sep 3;8(5):479-485. doi: 10.1080/19490976.2017.1299847. Epub 2017 Mar 1. Review.

10.

Genomewide landscape of gene-metabolome associations in Escherichia coli.

Fuhrer T, Zampieri M, Sévin DC, Sauer U, Zamboni N.

Mol Syst Biol. 2017 Jan 16;13(1):907. doi: 10.15252/msb.20167150.

11.

Nontargeted in vitro metabolomics for high-throughput identification of novel enzymes in Escherichia coli.

Sévin DC, Fuhrer T, Zamboni N, Sauer U.

Nat Methods. 2017 Feb;14(2):187-194. doi: 10.1038/nmeth.4103. Epub 2016 Dec 12.

PMID:
27941785
12.

Glycolysis without pyruvate kinase in Clostridium thermocellum.

Olson DG, Hörl M, Fuhrer T, Cui J, Zhou J, Maloney MI, Amador-Noguez D, Tian L, Sauer U, Lynd LR.

Metab Eng. 2017 Jan;39:169-180. doi: 10.1016/j.ymben.2016.11.011. Epub 2016 Dec 1.

PMID:
27914869
13.

L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity.

Geiger R, Rieckmann JC, Wolf T, Basso C, Feng Y, Fuhrer T, Kogadeeva M, Picotti P, Meissner F, Mann M, Zamboni N, Sallusto F, Lanzavecchia A.

Cell. 2016 Oct 20;167(3):829-842.e13. doi: 10.1016/j.cell.2016.09.031. Epub 2016 Oct 13.

14.

The maternal microbiota drives early postnatal innate immune development.

Gomez de Agüero M, Ganal-Vonarburg SC, Fuhrer T, Rupp S, Uchimura Y, Li H, Steinert A, Heikenwalder M, Hapfelmeier S, Sauer U, McCoy KD, Macpherson AJ.

Science. 2016 Mar 18;351(6279):1296-302. doi: 10.1126/science.aad2571.

15.

A fingerprint based metric for measuring similarities of crystalline structures.

Zhu L, Amsler M, Fuhrer T, Schaefer B, Faraji S, Rostami S, Ghasemi SA, Sadeghi A, Grauzinyte M, Wolverton C, Goedecker S.

J Chem Phys. 2016 Jan 21;144(3):034203. doi: 10.1063/1.4940026.

PMID:
26801027
16.

The outer mucus layer hosts a distinct intestinal microbial niche.

Li H, Limenitakis JP, Fuhrer T, Geuking MB, Lawson MA, Wyss M, Brugiroux S, Keller I, Macpherson JA, Rupp S, Stolp B, Stein JV, Stecher B, Sauer U, McCoy KD, Macpherson AJ.

Nat Commun. 2015 Sep 22;6:8292. doi: 10.1038/ncomms9292.

17.

Real-time metabolome profiling of the metabolic switch between starvation and growth.

Link H, Fuhrer T, Gerosa L, Zamboni N, Sauer U.

Nat Methods. 2015 Nov;12(11):1091-7. doi: 10.1038/nmeth.3584. Epub 2015 Sep 14.

PMID:
26366986
18.

Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways.

Nikel PI, Chavarría M, Fuhrer T, Sauer U, de Lorenzo V.

J Biol Chem. 2015 Oct 23;290(43):25920-32. doi: 10.1074/jbc.M115.687749. Epub 2015 Sep 8.

19.

Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli.

Castaño-Cerezo S, Bernal V, Post H, Fuhrer T, Cappadona S, Sánchez-Díaz NC, Sauer U, Heck AJ, Altelaar AF, Cánovas M.

Mol Syst Biol. 2014 Nov 27;10:762. doi: 10.15252/msb.20145227.

20.

Isolated pentagon rule violating endohedral metallofullerenes explained using the Hückel rule: a statistical mechanical study of the C84 Isomeric Set.

Fuhrer TJ, Lambert AM.

J Comput Chem. 2015 Jan 30;36(3):146-50. doi: 10.1002/jcc.23774. Epub 2014 Nov 3.

PMID:
25367443
21.

High-throughput discovery metabolomics.

Fuhrer T, Zamboni N.

Curr Opin Biotechnol. 2015 Feb;31:73-8. doi: 10.1016/j.copbio.2014.08.006. Epub 2014 Sep 3. Review.

PMID:
25197792
22.

Hepatic mTORC1 controls locomotor activity, body temperature, and lipid metabolism through FGF21.

Cornu M, Oppliger W, Albert V, Robitaille AM, Trapani F, Quagliata L, Fuhrer T, Sauer U, Terracciano L, Hall MN.

Proc Natl Acad Sci U S A. 2014 Aug 12;111(32):11592-9. doi: 10.1073/pnas.1412047111. Epub 2014 Jul 31.

23.

ZZ-Type a posteriori error estimators for adaptive boundary element methods on a curve.

Feischl M, Führer T, Karkulik M, Praetorius D.

Eng Anal Bound Elem. 2014 Jan;38(100):49-60.

24.

Identification of transcriptional and metabolic programs related to mammalian cell size.

Miettinen TP, Pessa HK, Caldez MJ, Fuhrer T, Diril MK, Sauer U, Kaldis P, Björklund M.

Curr Biol. 2014 Mar 17;24(6):598-608. doi: 10.1016/j.cub.2014.01.071. Epub 2014 Mar 6.

25.

A missing link in the transformation from asymmetric to symmetric metallofullerene cages implies a top-down fullerene formation mechanism.

Zhang J, Bowles FL, Bearden DW, Ray WK, Fuhrer T, Ye Y, Dixon C, Harich K, Helm RF, Olmstead MM, Balch AL, Dorn HC.

Nat Chem. 2013 Oct;5(10):880-5. doi: 10.1038/nchem.1748. Epub 2013 Sep 15.

PMID:
24056346
26.

Enhanced dipole moments in trimetallic nitride template endohedral metallofullerenes with the pentalene motif.

Zhang J, Bearden DW, Fuhrer T, Xu L, Fu W, Zuo T, Dorn HC.

J Am Chem Soc. 2013 Mar 6;135(9):3351-4. doi: 10.1021/ja312045t. Epub 2013 Jan 30.

PMID:
23342951
27.

Global probabilistic annotation of metabolic networks enables enzyme discovery.

Plata G, Fuhrer T, Hsiao TL, Sauer U, Vitkup D.

Nat Chem Biol. 2012 Oct;8(10):848-54.

28.

Cra regulates the cross-talk between the two branches of the phosphoenolpyruvate : phosphotransferase system of Pseudomonas putida.

Chavarría M, Fuhrer T, Sauer U, Pflüger-Grau K, de Lorenzo V.

Environ Microbiol. 2013 Jan;15(1):121-32. doi: 10.1111/j.1462-2920.2012.02808.x. Epub 2012 Jun 19.

PMID:
22708906
29.

Nanoscale fullerene compression of an yttrium carbide cluster.

Zhang J, Fuhrer T, Fu W, Ge J, Bearden DW, Dallas J, Duchamp J, Walker K, Champion H, Azurmendi H, Harich K, Dorn HC.

J Am Chem Soc. 2012 May 23;134(20):8487-93. doi: 10.1021/ja300134x. Epub 2012 May 14.

PMID:
22497289
30.

Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures.

Renilla S, Bernal V, Fuhrer T, Castaño-Cerezo S, Pastor JM, Iborra JL, Sauer U, Cánovas M.

Appl Microbiol Biotechnol. 2012 Mar;93(5):2109-24. doi: 10.1007/s00253-011-3536-4. Epub 2011 Sep 1.

PMID:
21881893
31.

High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry.

Fuhrer T, Heer D, Begemann B, Zamboni N.

Anal Chem. 2011 Sep 15;83(18):7074-80. doi: 10.1021/ac201267k. Epub 2011 Aug 18.

PMID:
21830798
32.

Gd2@C79N: isolation, characterization, and monoadduct formation of a very stable heterofullerene with a magnetic spin state of S = 15/2.

Fu W, Zhang J, Fuhrer T, Champion H, Furukawa K, Kato T, Mahaney JE, Burke BG, Williams KA, Walker K, Dixon C, Ge J, Shu C, Harich K, Dorn HC.

J Am Chem Soc. 2011 Jun 29;133(25):9741-50. doi: 10.1021/ja202011u. Epub 2011 Jun 6.

33.

Electronic properties and 13C NMR structural study of Y3N@C88.

Fu W, Zhang J, Champion H, Fuhrer T, Azuremendi H, Zuo T, Zhang J, Harich K, Dorn HC.

Inorg Chem. 2011 May 16;50(10):4256-9. doi: 10.1021/ic101772d. Epub 2011 Apr 20.

34.

Metabolism of pentose sugars in the hyperthermophilic archaea Sulfolobus solfataricus and Sulfolobus acidocaldarius.

Nunn CE, Johnsen U, Schönheit P, Fuhrer T, Sauer U, Hough DW, Danson MJ.

J Biol Chem. 2010 Oct 29;285(44):33701-9. doi: 10.1074/jbc.M110.146332. Epub 2010 Aug 24.

35.

The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.

Reher M, Fuhrer T, Bott M, Schönheit P.

J Bacteriol. 2010 Feb;192(4):964-74. doi: 10.1128/JB.01281-09. Epub 2009 Dec 18.

36.

89Y and 13C NMR cluster and carbon cage studies of an yttrium metallofullerene family, Y3N@C(2n) (n = 40-43).

Fu W, Xu L, Azurmendi H, Ge J, Fuhrer T, Zuo T, Reid J, Shu C, Harich K, Dorn HC.

J Am Chem Soc. 2009 Aug 26;131(33):11762-9. doi: 10.1021/ja902286v.

PMID:
19639998
37.

D-xylose degradation pathway in the halophilic archaeon Haloferax volcanii.

Johnsen U, Dambeck M, Zaiss H, Fuhrer T, Soppa J, Sauer U, Schönheit P.

J Biol Chem. 2009 Oct 2;284(40):27290-303. doi: 10.1074/jbc.M109.003814. Epub 2009 Jul 7.

38.

Actively controlled tuning of an external cavity diode laser by polarization spectroscopy.

Führer T, Stang D, Walther T.

Opt Express. 2009 Mar 30;17(7):4991-6.

PMID:
19333259
39.

Different biochemical mechanisms ensure network-wide balancing of reducing equivalents in microbial metabolism.

Fuhrer T, Sauer U.

J Bacteriol. 2009 Apr;191(7):2112-21. doi: 10.1128/JB.01523-08. Epub 2009 Jan 30.

40.

Highly regioselective derivatization of trimetallic nitride templated endohedral metallofullerenes via a facile photochemical reaction.

Shu C, Slebodnick C, Xu L, Champion H, Fuhrer T, Cai T, Reid JE, Fu W, Harich K, Dorn HC, Gibson HW.

J Am Chem Soc. 2008 Dec 31;130(52):17755-60. doi: 10.1021/ja804909t.

PMID:
19055362
41.

Propane reacts with O2 and H2 on gold supported TS-1 to form oxygenates with high selectivity.

Bravo-Suárez JJ, Bando KK, Akita T, Fujitani T, Fuhrer TJ, Oyama ST.

Chem Commun (Camb). 2008 Jul 28;(28):3272-4. doi: 10.1039/b800620b. Epub 2008 Jun 13.

PMID:
18622441
42.
43.
44.

Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis.

del Castillo T, Ramos JL, Rodríguez-Herva JJ, Fuhrer T, Sauer U, Duque E.

J Bacteriol. 2007 Jul;189(14):5142-52. Epub 2007 May 4.

45.
46.

Multiple and interconnected pathways for L-lysine catabolism in Pseudomonas putida KT2440.

Revelles O, Espinosa-Urgel M, Fuhrer T, Sauer U, Ramos JL.

J Bacteriol. 2005 Nov;187(21):7500-10.

47.

Pulmonary aspiration: new therapeutic approaches in the experimental model.

Beck-Schimmer B, Rosenberger DS, Neff SB, Jamnicki M, Suter D, Fuhrer T, Schwendener R, Booy C, Reyes L, Pasch T, Schimmer RC.

Anesthesiology. 2005 Sep;103(3):556-66.

PMID:
16129981
48.
49.

Signature of atomic structure in the quantum conductance of gold nanowires.

Rodrigues V, Fuhrer T, Ugarte D.

Phys Rev Lett. 2000 Nov 6;85(19):4124-7.

PMID:
11056640

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