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Items: 40

1.

AID/APOBEC-like cytidine deaminases are ancient innate immune mediators in invertebrates.

Liu MC, Liao WY, Buckley KM, Yang SY, Rast JP, Fugmann SD.

Nat Commun. 2018 May 16;9(1):1948. doi: 10.1038/s41467-018-04273-x.

2.

Lectins identify distinct populations of coelomocytes in Strongylocentrotus purpuratus.

Liao WY, Fugmann SD.

PLoS One. 2017 Nov 10;12(11):e0187987. doi: 10.1371/journal.pone.0187987. eCollection 2017.

3.

Evidence for parallel evolution of a gene involved in the regulation of spermatogenesis.

Wang XR, Ling LB, Huang HH, Lin JJ, Fugmann SD, Yang SY.

Proc Biol Sci. 2017 May 31;284(1855). pii: 20170324. doi: 10.1098/rspb.2017.0324.

4.

Collaboration of RAG2 with RAG1-like proteins during the evolution of V(D)J recombination.

Carmona LM, Fugmann SD, Schatz DG.

Genes Dev. 2016 Apr 15;30(8):909-17. doi: 10.1101/gad.278432.116. Epub 2016 Apr 7.

5.

The identification of a novel SIRT6 modulator from Trigonella foenum-graecum using ligand fishing with protein coated magnetic beads.

Singh N, Ravichandran S, Spelman K, Fugmann SD, Moaddel R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Oct 1;968:105-11. doi: 10.1016/j.jchromb.2014.03.016. Epub 2014 Mar 15.

6.

Form follows function - the three-dimensional structure of antigen receptor gene loci.

Fugmann SD.

Curr Opin Immunol. 2014 Apr;27:33-7. doi: 10.1016/j.coi.2014.01.011. Epub 2014 Feb 16. Review.

PMID:
24549092
7.

Pharmacophore model of the quercetin binding site of the SIRT6 protein.

Ravichandran S, Singh N, Donnelly D, Migliore M, Johnson P, Fishwick C, Luke BT, Martin B, Maudsley S, Fugmann SD, Moaddel R.

J Mol Graph Model. 2014 Apr;49:38-46. doi: 10.1016/j.jmgm.2014.01.004. Epub 2014 Jan 20.

8.

Synthesis and characterization of a SIRT6 open tubular column: predicting deacetylation activity using frontal chromatography.

Singh N, Ravichandran S, Norton DD, Fugmann SD, Moaddel R.

Anal Biochem. 2013 May 15;436(2):78-83. doi: 10.1016/j.ab.2013.01.018. Epub 2013 Jan 29.

9.

Transcription, splicing, and release: are we there yet?

Sen R, Fugmann SD.

Cell. 2012 Jul 20;150(2):241-3. doi: 10.1016/j.cell.2012.07.004.

10.

Synthesis and characterization of SIRT6 protein coated magnetic beads: identification of a novel inhibitor of SIRT6 deacetylase from medicinal plant extracts.

Yasuda M, Wilson DR, Fugmann SD, Moaddel R.

Anal Chem. 2011 Oct 1;83(19):7400-7. doi: 10.1021/ac201403y. Epub 2011 Sep 2.

11.

Separation of mutational and transcriptional enhancers in Ig genes.

Kothapalli NR, Collura KM, Norton DD, Fugmann SD.

J Immunol. 2011 Sep 15;187(6):3247-55. doi: 10.4049/jimmunol.1101568. Epub 2011 Aug 15.

12.

Characterizing somatic hypermutation and gene conversion in the chicken DT40 cell system.

Kothapalli N, Fugmann SD.

Methods Mol Biol. 2011;748:255-71. doi: 10.1007/978-1-61779-139-0_18.

PMID:
21701980
13.

Classical Mus musculus Igκ enhancers support transcription but not high level somatic hypermutation from a V-lambda promoter in chicken DT40 cells.

Kothapalli NR, Norton DD, Fugmann SD.

PLoS One. 2011 Apr 20;6(4):e18955. doi: 10.1371/journal.pone.0018955.

14.

RAG-2 unleashed: lymphocytes beware.

Fugmann SD.

Immunity. 2011 Feb 25;34(2):137-9. doi: 10.1016/j.immuni.2011.02.007.

15.

Targeting of AID-mediated sequence diversification to immunoglobulin genes.

Kothapalli NR, Fugmann SD.

Curr Opin Immunol. 2011 Apr;23(2):184-9. doi: 10.1016/j.coi.2010.12.009. Epub 2011 Feb 2. Review.

16.

The origins of vertebrate adaptive immunity.

Litman GW, Rast JP, Fugmann SD.

Nat Rev Immunol. 2010 Aug;10(8):543-53. doi: 10.1038/nri2807. Review.

17.

The origins of the Rag genes--from transposition to V(D)J recombination.

Fugmann SD.

Semin Immunol. 2010 Feb;22(1):10-6. doi: 10.1016/j.smim.2009.11.004. Epub 2009 Dec 9. Review.

18.

A coming-of-age story: activation-induced cytidine deaminase turns 10.

Delker RK, Fugmann SD, Papavasiliou FN.

Nat Immunol. 2009 Nov;10(11):1147-53. doi: 10.1038/ni.1799. Epub 2009 Oct 20. Review.

19.

The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails.

Wilson DR, Norton DD, Fugmann SD.

Dev Comp Immunol. 2008;32(10):1221-30. doi: 10.1016/j.dci.2008.03.012. Epub 2008 May 8.

20.
21.
22.

The beyond 12/23 restriction is imposed at the nicking and pairing steps of DNA cleavage during V(D)J recombination.

Drejer-Teel AH, Fugmann SD, Schatz DG.

Mol Cell Biol. 2007 Sep;27(18):6288-99. Epub 2007 Jul 16.

23.

Activation-induced cytidine deaminase-mediated sequence diversification is transiently targeted to newly integrated DNA substrates.

Yang SY, Fugmann SD, Gramlich HS, Schatz DG.

J Biol Chem. 2007 Aug 31;282(35):25308-13. Epub 2007 Jul 5.

24.

Control of gene conversion and somatic hypermutation by immunoglobulin promoter and enhancer sequences.

Yang SY, Fugmann SD, Schatz DG.

J Exp Med. 2006 Dec 25;203(13):2919-28. Epub 2006 Dec 18.

25.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

26.

The immune gene repertoire encoded in the purple sea urchin genome.

Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP.

Dev Biol. 2006 Dec 1;300(1):349-65. Epub 2006 Sep 3.

27.

An ancient evolutionary origin of the Rag1/2 gene locus.

Fugmann SD, Messier C, Novack LA, Cameron RA, Rast JP.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3728-33. Epub 2006 Feb 27.

28.

Immunology. UNGstoppable switching.

Unniraman S, Fugmann SD, Schatz DG.

Science. 2004 Aug 20;305(5687):1113-4. No abstract available.

PMID:
15326342
29.
30.

Non-redundancy of cytidine deaminases in class switch recombination.

Fugmann SD, Rush JS, Schatz DG.

Eur J Immunol. 2004 Mar;34(3):844-849. doi: 10.1002/eji.200324418.

31.

A functional analysis of the spacer of V(D)J recombination signal sequences.

Lee AI, Fugmann SD, Cowell LG, Ptaszek LM, Kelsoe G, Schatz DG.

PLoS Biol. 2003 Oct;1(1):E1. Epub 2003 Oct 13.

32.

RNA AIDS DNA.

Fugmann SD, Schatz DG.

Nat Immunol. 2003 May;4(5):429-30. No abstract available.

PMID:
12719733
33.

Extrachromosomal recombination substrates recapitulate beyond 12/23 restricted VDJ recombination in nonlymphoid cells.

Jung D, Bassing CH, Fugmann SD, Cheng HL, Schatz DG, Alt FW.

Immunity. 2003 Jan;18(1):65-74.

34.

DNA repair: breaking the seal.

Fugmann SD.

Nature. 2002 Apr 18;416(6882):691-4. No abstract available.

PMID:
11961538
35.

Immunology. One AID to unite them all.

Fugmann SD, Schatz DG.

Science. 2002 Feb 15;295(5558):1244-5. No abstract available.

PMID:
11847327
36.
37.

RAG1 and RAG2 in V(D)J recombination and transposition.

Fugmann SD.

Immunol Res. 2001;23(1):23-39. Review.

PMID:
11417858
38.

The RAG proteins and V(D)J recombination: complexes, ends, and transposition.

Fugmann SD, Lee AI, Shockett PE, Villey IJ, Schatz DG.

Annu Rev Immunol. 2000;18:495-527. Review.

PMID:
10837067
39.
40.

Mutations in the gene for the common gamma chain (gammac) in X-linked severe combined immunodeficiency.

Fugmann SD, Müller S, Friedrich W, Bartram CR, Schwarz K.

Hum Genet. 1998 Dec;103(6):730-1.

PMID:
9921912

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