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Items: 1 to 50 of 72

1.

On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre.

Reintjes G, Tegetmeyer HE, Bürgisser M, Orlić S, Tews I, Zubkov M, Voß D, Zielinski O, Quast C, Glöckner FO, Amann R, Ferdelman TG, Fuchs BM.

Appl Environ Microbiol. 2019 Jul 1;85(14). pii: e00184-19. doi: 10.1128/AEM.00184-19. Print 2019 Jul 15.

PMID:
31076426
2.

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae.

Francis TB, Krüger K, Fuchs BM, Teeling H, Amann RI.

Syst Appl Microbiol. 2019 Jan;42(1):41-53. doi: 10.1016/j.syapm.2018.08.007. Epub 2018 Aug 20.

PMID:
30193855
3.

Development of a 16S rRNA-targeted fluorescence in situ hybridization probe for quantification of the ammonia-oxidizer Nitrosotalea devanaterra and its relatives.

Restrepo-Ortiz CX, Merbt SN, Barrero-Canossa J, Fuchs BM, Casamayor EO.

Syst Appl Microbiol. 2018 Jul;41(4):408-413. doi: 10.1016/j.syapm.2018.04.003. Epub 2018 Apr 28.

PMID:
29747878
4.

"Pomacytosis"-Semi-extracellular phagocytosis of cyanobacteria by the smallest marine algae.

Kamennaya NA, Kennaway G, Fuchs BM, Zubkov MV.

PLoS Biol. 2018 Jan 5;16(1):e2003502. doi: 10.1371/journal.pbio.2003502. eCollection 2018 Jan.

5.

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

Martínez-Pérez C, Mohr W, Schwedt A, Dürschlag J, Callbeck CM, Schunck H, Dekaezemacker J, Buckner CRT, Lavik G, Fuchs BM, Kuypers MMM.

Environ Microbiol. 2018 Feb;20(2):755-768. doi: 10.1111/1462-2920.14008. Epub 2018 Jan 3.

PMID:
29194930
6.

An alternative polysaccharide uptake mechanism of marine bacteria.

Reintjes G, Arnosti C, Fuchs BM, Amann R.

ISME J. 2017 Jul;11(7):1640-1650. doi: 10.1038/ismej.2017.26. Epub 2017 Mar 21.

7.

Genomic and physiological analyses of 'Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms.

Avcı B, Hahnke RL, Chafee M, Fischer T, Gruber-Vodicka H, Tegetmeyer HE, Harder J, Fuchs BM, Amann RI, Teeling H.

Environ Microbiol. 2017 Mar;19(3):1209-1221. doi: 10.1111/1462-2920.13646. Epub 2017 Feb 3.

PMID:
28000419
8.

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle.

Martínez-Pérez C, Mohr W, Löscher CR, Dekaezemacker J, Littmann S, Yilmaz P, Lehnen N, Fuchs BM, Lavik G, Schmitz RA, LaRoche J, Kuypers MM.

Nat Microbiol. 2016 Sep 12;1(11):16163. doi: 10.1038/nmicrobiol.2016.163.

PMID:
27617976
9.

Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes.

Bruder LM, Dörkes M, Fuchs BM, Ludwig W, Liebl W.

Syst Appl Microbiol. 2016 Oct;39(7):464-475. doi: 10.1016/j.syapm.2016.08.005. Epub 2016 Sep 13.

PMID:
27665238
10.

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Bennke CM, Krüger K, Kappelmann L, Huang S, Gobet A, Schüler M, Barbe V, Fuchs BM, Michel G, Teeling H, Amann RI.

Environ Microbiol. 2016 Dec;18(12):4456-4470. doi: 10.1111/1462-2920.13429. Epub 2016 Jul 18.

PMID:
27348854
11.

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

Barrero-Canosa J, Moraru C, Zeugner L, Fuchs BM, Amann R.

Environ Microbiol. 2017 Jan;19(1):70-82. doi: 10.1111/1462-2920.13432. Epub 2016 Jul 18.

PMID:
27348074
12.

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms.

Teeling H, Fuchs BM, Bennke CM, Krüger K, Chafee M, Kappelmann L, Reintjes G, Waldmann J, Quast C, Glöckner FO, Lucas J, Wichels A, Gerdts G, Wiltshire KH, Amann RI.

Elife. 2016 Apr 7;5:e11888. doi: 10.7554/eLife.11888.

13.

Modification of a High-Throughput Automatic Microbial Cell Enumeration System for Shipboard Analyses.

Bennke CM, Reintjes G, Schattenhofer M, Ellrott A, Wulf J, Zeder M, Fuchs BM.

Appl Environ Microbiol. 2016 May 16;82(11):3289-3296. doi: 10.1128/AEM.03931-15. Print 2016 Jun 1.

14.

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, Pjevac P, Probandt D, Richter M, Stepanauskas R, Mußmann M.

ISME J. 2016 Aug;10(8):1939-53. doi: 10.1038/ismej.2015.257. Epub 2016 Feb 12.

15.

Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake.

Pizzetti I, Schulz F, Tyml T, Fuchs BM, Amann R, Horn M, Fazi S.

Environ Microbiol. 2016 Sep;18(8):2405-17. doi: 10.1111/1462-2920.13111. Epub 2015 Dec 21.

PMID:
26530333
16.

MiL-FISH: Multilabeled Oligonucleotides for Fluorescence In Situ Hybridization Improve Visualization of Bacterial Cells.

Schimak MP, Kleiner M, Wetzel S, Liebeke M, Dubilier N, Fuchs BM.

Appl Environ Microbiol. 2015 Oct 16;82(1):62-70. doi: 10.1128/AEM.02776-15. Print 2016 Jan 1.

17.

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

Yamaguchi T, Fuchs BM, Amann R, Kawakami S, Kubota K, Hatamoto M, Yamaguchi T.

Syst Appl Microbiol. 2015 Sep;38(6):400-5. doi: 10.1016/j.syapm.2015.06.007. Epub 2015 Jul 13.

PMID:
26215142
18.

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

Krupke A, Mohr W, LaRoche J, Fuchs BM, Amann RI, Kuypers MM.

ISME J. 2015 Jul;9(7):1635-47. doi: 10.1038/ismej.2014.253. Epub 2014 Dec 23.

19.
20.

Stable composition of the nano- and picoplankton community during the ocean iron fertilization experiment LOHAFEX.

Thiele S, Wolf C, Schulz IK, Assmy P, Metfies K, Fuchs BM.

PLoS One. 2014 Nov 17;9(11):e113244. doi: 10.1371/journal.pone.0113244. eCollection 2014.

21.

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea.

Hahnke RL, Bennke CM, Fuchs BM, Mann AJ, Rhiel E, Teeling H, Amann R, Harder J.

Environ Microbiol. 2015 Oct;17(10):3515-26. doi: 10.1111/1462-2920.12479. Epub 2014 May 5.

PMID:
24725270
22.

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization.

Bižić-Ionescu M, Zeder M, Ionescu D, Orlić S, Fuchs BM, Grossart HP, Amann R.

Environ Microbiol. 2015 Oct;17(10):3500-14. doi: 10.1111/1462-2920.12466. Epub 2014 Apr 24.

PMID:
24674021
23.

Distribution of a consortium between unicellular algae and the N2 fixing cyanobacterium UCYN-A in the North Atlantic Ocean.

Krupke A, Lavik G, Halm H, Fuchs BM, Amann RI, Kuypers MM.

Environ Microbiol. 2014 Oct;16(10):3153-67. doi: 10.1111/1462-2920.12431. Epub 2014 Apr 17.

PMID:
24612325
24.

Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms.

Bennke CM, Neu TR, Fuchs BM, Amann R.

Syst Appl Microbiol. 2013 Sep;36(6):417-25. doi: 10.1016/j.syapm.2013.05.002. Epub 2013 Jul 1.

PMID:
23809997
25.

High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy).

Pizzetti I, Fazi S, Fuchs BM, Amann R.

Environ Microbiol Rep. 2012 Aug;4(4):446-52. doi: 10.1111/j.1758-2229.2012.00361.x. Epub 2012 Jun 19.

PMID:
23760831
27.

In situ identification and N₂ and C fixation rates of uncultivated cyanobacteria populations.

Krupke A, Musat N, Laroche J, Mohr W, Fuchs BM, Amann RI, Kuypers MM, Foster RA.

Syst Appl Microbiol. 2013 Jun;36(4):259-71. doi: 10.1016/j.syapm.2013.02.002. Epub 2013 Mar 27.

PMID:
23541027
28.

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean.

Arnosti C, Fuchs BM, Amann R, Passow U.

Front Microbiol. 2012 Dec 13;3:425. doi: 10.3389/fmicb.2012.00425. eCollection 2012.

29.

Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments.

Kolinko S, Wanner G, Katzmann E, Kiemer F, Fuchs BM, Schüler D.

Environ Microbiol. 2013 May;15(5):1290-301. doi: 10.1111/1462-2920.12004. Epub 2012 Oct 26.

PMID:
23106823
30.

Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre.

Gómez-Pereira PR, Hartmann M, Grob C, Tarran GA, Martin AP, Fuchs BM, Scanlan DJ, Zubkov MV.

ISME J. 2013 Mar;7(3):603-14. doi: 10.1038/ismej.2012.126. Epub 2012 Oct 25.

31.

Microbial community response during the iron fertilization experiment LOHAFEX.

Thiele S, Fuchs BM, Ramaiah N, Amann R.

Appl Environ Microbiol. 2012 Dec;78(24):8803-12. doi: 10.1128/AEM.01814-12. Epub 2012 Oct 12.

32.

Flow cytometric identification of Mamiellales clade II in the Southern Atlantic Ocean.

Gómez-Pereira PR, Kennaway G, Fuchs BM, Tarran GA, Zubkov MV.

FEMS Microbiol Ecol. 2013 Mar;83(3):664-71. doi: 10.1111/1574-6941.12023. Epub 2012 Oct 29.

33.

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.

Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, Bennke CM, Kassabgy M, Huang S, Mann AJ, Waldmann J, Weber M, Klindworth A, Otto A, Lange J, Bernhardt J, Reinsch C, Hecker M, Peplies J, Bockelmann FD, Callies U, Gerdts G, Wichels A, Wiltshire KH, Glöckner FO, Schweder T, Amann R.

Science. 2012 May 4;336(6081):608-11. doi: 10.1126/science.1218344.

34.

Seasonal dynamics and modeling of a Vibrio community in coastal waters of the North Sea.

Oberbeckmann S, Fuchs BM, Meiners M, Wichels A, Wiltshire KH, Gerdts G.

Microb Ecol. 2012 Apr;63(3):543-51. doi: 10.1007/s00248-011-9990-9. Epub 2011 Dec 28.

PMID:
22202887
35.

Internal and external influences on near-surface microbial community structure in the vicinity of the Cape Verde Islands.

Hill PG, Heywood JL, Holland RJ, Purdie DA, Fuchs BM, Zubkov MV.

Microb Ecol. 2012 Jan;63(1):139-48. doi: 10.1007/s00248-011-9952-2. Epub 2011 Oct 13.

PMID:
21994033
36.

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean.

Gómez-Pereira PR, Schüler M, Fuchs BM, Bennke C, Teeling H, Waldmann J, Richter M, Barbe V, Bataille E, Glöckner FO, Amann R.

Environ Microbiol. 2012 Jan;14(1):52-66. doi: 10.1111/j.1462-2920.2011.02555.x. Epub 2011 Sep 6.

PMID:
21895912
37.

Temporal variability of coastal Planctomycetes clades at Kabeltonne station, North Sea.

Pizzetti I, Fuchs BM, Gerdts G, Wichels A, Wiltshire KH, Amann R.

Appl Environ Microbiol. 2011 Jul;77(14):5009-17. doi: 10.1128/AEM.02931-10. Epub 2011 Jun 3.

38.

Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean.

Schattenhofer M, Wulf J, Kostadinov I, Glöckner FO, Zubkov MV, Fuchs BM.

Syst Appl Microbiol. 2011 Sep;34(6):470-5. doi: 10.1016/j.syapm.2011.01.008. Epub 2011 May 19.

PMID:
21596506
39.

Ammonium and attachment of Rhodopirellula baltica.

Frank CS, Langhammer P, Fuchs BM, Harder J.

Arch Microbiol. 2011 May;193(5):365-72. doi: 10.1007/s00203-011-0681-1. Epub 2011 Feb 22.

PMID:
21340506
40.

Concepts and software for a rational design of polynucleotide probes.

Moraru C, Moraru G, Fuchs BM, Amann R.

Environ Microbiol Rep. 2011 Feb;3(1):69-78. doi: 10.1111/j.1758-2229.2010.00189.x.

PMID:
23761233
41.

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics.

Weber M, Teeling H, Huang S, Waldmann J, Kassabgy M, Fuchs BM, Klindworth A, Klockow C, Wichels A, Gerdts G, Amann R, Glöckner FO.

ISME J. 2011 May;5(5):918-28. doi: 10.1038/ismej.2010.180. Epub 2010 Dec 16.

42.

GeneFISH--an in situ technique for linking gene presence and cell identity in environmental microorganisms.

Moraru C, Lam P, Fuchs BM, Kuypers MM, Amann R.

Environ Microbiol. 2010 Nov;12(11):3057-73. doi: 10.1111/j.1462-2920.2010.02281.x.

PMID:
20629705
43.

Bacterioplankton diversity and community composition in the Southern Lagoon of Venice.

Simonato F, Gómez-Pereira PR, Fuchs BM, Amann R.

Syst Appl Microbiol. 2010 Apr;33(3):128-38. doi: 10.1016/j.syapm.2009.12.006. Epub 2010 Mar 15.

PMID:
20227843
44.

Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean.

Gómez-Pereira PR, Fuchs BM, Alonso C, Oliver MJ, van Beusekom JE, Amann R.

ISME J. 2010 Apr;4(4):472-87. doi: 10.1038/ismej.2009.142. Epub 2010 Jan 7.

PMID:
20054356
45.

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

Schattenhofer M, Fuchs BM, Amann R, Zubkov MV, Tarran GA, Pernthaler J.

Environ Microbiol. 2009 Aug;11(8):2078-93. doi: 10.1111/j.1462-2920.2009.01929.x. Epub 2009 Apr 30.

PMID:
19453607
46.

The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.

Spring S, Lünsdorf H, Fuchs BM, Tindall BJ.

PLoS One. 2009;4(3):e4866. doi: 10.1371/journal.pone.0004866. Epub 2009 Mar 16.

47.

Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria.

Yan S, Fuchs BM, Lenk S, Harder J, Wulf J, Jiao NZ, Amann R.

Syst Appl Microbiol. 2009 Apr;32(2):124-39. doi: 10.1016/j.syapm.2008.12.001.

PMID:
19216045
48.

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs.

Lavik G, Stührmann T, Brüchert V, Van der Plas A, Mohrholz V, Lam P, Mussmann M, Fuchs BM, Amann R, Lass U, Kuypers MM.

Nature. 2009 Jan 29;457(7229):581-4. doi: 10.1038/nature07588. Epub 2008 Dec 10.

PMID:
19078958
49.

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones.

Woebken D, Lam P, Kuypers MM, Naqvi SW, Kartal B, Strous M, Jetten MS, Fuchs BM, Amann R.

Environ Microbiol. 2008 Nov;10(11):3106-19. doi: 10.1111/j.1462-2920.2008.01640.x. Epub 2008 May 27. Erratum in: Environ Microbiol. 2010 Aug;12(8):2384.

PMID:
18510553
50.

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

Amann R, Fuchs BM.

Nat Rev Microbiol. 2008 May;6(5):339-48. doi: 10.1038/nrmicro1888. Review.

PMID:
18414500

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