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Items: 1 to 50 of 69

1.

On the connection between nonmonotonic taste behavior and molecular conformation in solution: The case of rebaudioside-A.

Chopade PD, Sarma B, Santiso EE, Simpson J, Fry JC, Yurttas N, Biermann KL, Chen J, Trout BL, Myerson AS.

J Chem Phys. 2015 Dec 28;143(24):244301. doi: 10.1063/1.4937946.

PMID:
26723665
2.

Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient.

O'Sullivan LA, Sass AM, Webster G, Fry JC, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2013 Jul;85(1):143-57. doi: 10.1111/1574-6941.12106. Epub 2013 Apr 5.

3.

The sweetness concentration-response of r,r-monatin, a naturally occurring high-potency sweetener.

Fry JC, Yurttas N, Biermann KL, Lindley MG, Goulson MJ.

J Food Sci. 2012 Oct;77(10):S362-4. doi: 10.1111/j.1750-3841.2012.02885.x. Epub 2012 Aug 27.

PMID:
22924681
4.

A dual-spectrometer approach to reflectance measurements under sub-optimal sky conditions.

Bachmann CM, Montes MJ, Parrish CE, Fusina RA, Nichols CR, Li RR, Hallenborg E, Jones CA, Lee K, Sellars J, White SA, Fry JC.

Opt Express. 2012 Apr 9;20(8):8959-73. doi: 10.1364/OE.20.008959.

PMID:
22513607
5.

Sweetness concentration-response behavior of rebiana at room and refrigerator temperatures.

Fry JC, Yurttas N, Biermann KL.

J Food Sci. 2011 Nov-Dec;76(9):S545-8. doi: 10.1111/j.1750-3841.2011.02414.x. Epub 2011 Oct 20.

PMID:
22416727
6.

Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions.

Webster G, Sass H, Cragg BA, Gorra R, Knab NJ, Green CJ, Mathes F, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2011 Aug;77(2):248-63. doi: 10.1111/j.1574-6941.2011.01109.x. Epub 2011 May 9.

7.

Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing.

Webster G, Rinna J, Roussel EG, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2010 May;72(2):179-97. doi: 10.1111/j.1574-6941.2010.00848.x. Epub 2010 Feb 15.

8.

Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).

Webster G, Blazejak A, Cragg BA, Schippers A, Sass H, Rinna J, Tang X, Mathes F, Ferdelman TG, Fry JC, Weightman AJ, Parkes RJ.

Environ Microbiol. 2009 Jan;11(1):239-57. doi: 10.1111/j.1462-2920.2008.01759.x. Epub 2008 Sep 23.

9.

Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments.

O'Sullivan LA, Webster G, Fry JC, Parkes RJ, Weightman AJ.

J Microbiol Methods. 2008 Dec;75(3):579-81. doi: 10.1016/j.mimet.2008.08.006. Epub 2008 Aug 26.

PMID:
18789360
10.

Prokaryotic biodiversity and activity in the deep subseafloor biosphere.

Fry JC, Parkes RJ, Cragg BA, Weightman AJ, Webster G.

FEMS Microbiol Ecol. 2008 Nov;66(2):181-96. doi: 10.1111/j.1574-6941.2008.00566.x. Epub 2008 Aug 20. Review.

11.

Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet.

Tett A, Spiers AJ, Crossman LC, Ager D, Ciric L, Dow JM, Fry JC, Harris D, Lilley A, Oliver A, Parkhill J, Quail MA, Rainey PB, Saunders NJ, Seeger K, Snyder LA, Squares R, Thomas CM, Turner SL, Zhang XX, Field D, Bailey MJ.

ISME J. 2007 Aug;1(4):331-40. Epub 2007 Jul 5.

12.

Transformation of Acinetobacter baylyi in non-sterile soil using recombinant plant nuclear DNA.

Simpson DJ, Fry JC, Rogers HJ, Day MJ.

Environ Biosafety Res. 2007 Jan-Jun;6(1-2):101-12. Epub 2007 Sep 20.

13.

Influence of flanking homology and insert size on the transformation frequency of Acinetobacter baylyi BD413.

Simpson DJ, Dawson LF, Fry JC, Rogers HJ, Day MJ.

Environ Biosafety Res. 2007 Jan-Jun;6(1-2):55-69. Epub 2007 Sep 12.

14.

Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark).

Parkes RJ, Cragg BA, Banning N, Brock F, Webster G, Fry JC, Hornibrook E, Pancost RD, Kelly S, Knab N, Jørgensen BB, Rinna J, Weightman AJ.

Environ Microbiol. 2007 May;9(5):1146-61.

PMID:
17472631
16.

Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.

Webster G, Parkes RJ, Cragg BA, Newberry CJ, Weightman AJ, Fry JC.

FEMS Microbiol Ecol. 2006 Oct;58(1):65-85.

17.

New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.

Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ.

Appl Environ Microbiol. 2006 Sep;72(9):5734-41.

18.

Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype.

Haines AS, Akhtar P, Stephens ER, Jones K, Thomas CM, Perkins CD, Williams JR, Day MJ, Fry JC.

Microbiology. 2006 Sep;152(Pt 9):2689-701.

PMID:
16946264
19.

A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries.

Webster G, Watt LC, Rinna J, Fry JC, Evershed RP, Parkes RJ, Weightman AJ.

Environ Microbiol. 2006 Sep;8(9):1575-89.

PMID:
16913918
21.

At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ.

Appl Environ Microbiol. 2005 Dec;71(12):7724-36.

22.

Metal compartmentation and speciation in a soil sentinel: the earthworm, Dendrodrilus rubidus.

Cotter-Howells J, Charnock JM, Winters C, Kille P, Fry JC, Morgan AJ.

Environ Sci Technol. 2005 Oct 1;39(19):7731-40.

PMID:
16245852
23.

Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'.

O'Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC.

Int J Syst Evol Microbiol. 2005 Sep;55(Pt 5):2189-94.

PMID:
16166730
24.

Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jørgensen BB, Aiello IW, Fry JC.

Nature. 2005 Jul 21;436(7049):390-4.

25.

Investigation of the methanogen population structure and activity in a brackish lake sediment.

Banning N, Brock F, Fry JC, Parkes RJ, Hornibrook ER, Weightman AJ.

Environ Microbiol. 2005 Jul;7(7):947-60.

PMID:
15946291
26.
27.

Molecular monitoring of culturable bacteria from deep-sea sediment of the Nankai Trough, Leg 190 Ocean Drilling Program.

Toffin L, Webster G, Weightman AJ, Fry JC, Prieur D.

FEMS Microbiol Ecol. 2004 Jun 1;48(3):357-67. doi: 10.1016/j.femsec.2004.02.009.

28.

Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments.

O'Sullivan LA, Fuller KE, Thomas EM, Turley CM, Fry JC, Weightman AJ.

FEMS Microbiol Ecol. 2004 Mar 1;47(3):359-70. doi: 10.1016/S0168-6496(03)00300-3.

29.

Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190.

Newberry CJ, Webster G, Cragg BA, Parkes RJ, Weightman AJ, Fry JC.

Environ Microbiol. 2004 Mar;6(3):274-87.

PMID:
14871211
30.

New tools for elucidating the ecology of micro-organisms in aquatic environments.

Fry JC, Giuliano L, Golyshin PN.

FEMS Microbiol Ecol. 2003 Dec 1;46(3):231. doi: 10.1016/S0168-6496(03)00204-6. No abstract available.

31.

Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale.

Webster G, Newberry CJ, Fry JC, Weightman AJ.

J Microbiol Methods. 2003 Oct;55(1):155-64.

PMID:
14500007
32.

Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil.

Ellis RJ, Morgan P, Weightman AJ, Fry JC.

Appl Environ Microbiol. 2003 Jun;69(6):3223-30.

33.

Elevated abundance of bacteriophage infecting bacteria in soil.

Ashelford KE, Day MJ, Fry JC.

Appl Environ Microbiol. 2003 Jan;69(1):285-9.

36.

Similarity of microbial and meiofaunal community analyses for mapping ecological effects of heavy-metal contamination in soil.

Ellis RJ, Best JG, Fry JC, Morgan P, Neish B, Trett MW, Weightman AJ.

FEMS Microbiol Ecol. 2002 May 1;40(2):113-22. doi: 10.1111/j.1574-6941.2002.tb00943.x.

37.

A comparative evaluation of five typing techniques for determining the diversity of fluorescent pseudomonads.

Dawson SL, Fry JC, Dancer BN.

J Microbiol Methods. 2002 Jun;50(1):9-22.

PMID:
11943354
38.

New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon.

O'Sullivan LA, Weightman AJ, Fry JC.

Appl Environ Microbiol. 2002 Jan;68(1):201-10. Erratum in: Appl Environ Microbiol 2002 Apr;68(4):2093.

39.

FEMS announces online submission starting in January 2002 via http://fems.manuscriptcentral.com.

Fry JC.

FEMS Microbiol Ecol. 2002 Jan 1;39(1):v. doi: 10.1111/j.1574-6941.2002.tb00899.x. No abstract available.

40.

Comparison of microbial and meiofaunal community analyses for determining impact of heavy metal contamination.

Ellis RJ, Neish B, Trett MW, Best JG, Weightman AJ, Morgan P, Fry JC.

J Microbiol Methods. 2001 Jul;45(3):171-85.

PMID:
11348675
41.
42.
43.

Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere.

Ashelford KE, Norris SJ, Fry JC, Bailey MJ, Day MJ.

Appl Environ Microbiol. 2000 Oct;66(10):4193-9.

44.

Characterization of six bacteriophages of serratia liquefaciens CP6 isolated from the sugar beet phytosphere

Ashelford KE, Fry JC, Bailey MJ, Jeffries AR, Day MJ.

Appl Environ Microbiol. 1999 May;65(5):1959-65.

45.

In situ population dynamics of bacterial viruses in a terrestrial environment

Ashelford KE, Day MJ, Bailey MJ, Lilley AK, Fry JC.

Appl Environ Microbiol. 1999 Jan;65(1):169-74.

46.

Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA.

Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ, Dymock D, Wade WG.

Appl Environ Microbiol. 1998 Feb;64(2):795-9. Erratum in: Appl Environ Microbiol 1998 Jun;64(6):2333.

47.

Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea.

Bale SJ, Goodman K, Rochelle PA, Marchesi JR, Fry JC, Weightman AJ, Parkes RJ.

Int J Syst Bacteriol. 1997 Apr;47(2):515-21.

PMID:
9103642
48.

Natural transformation in river epilithon.

Williams HG, Day MJ, Fry JC, Stewart GJ.

Appl Environ Microbiol. 1996 Aug;62(8):2994-8.

49.

DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities.

Rochelle PA, Fry JC, Parkes RJ, Weightman AJ.

FEMS Microbiol Lett. 1992 Dec 15;100(1-3):59-65.

PMID:
1282488
50.

DNase I treatment of Taq DNA polymerase for complete PCR decontamination.

Rochelle PA, Weightman AJ, Fry JC.

Biotechniques. 1992 Oct;13(4):520. No abstract available.

PMID:
1476716

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