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Items: 1 to 50 of 100

1.

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.

Aparicio-Puerta E, Lebrón R, Rueda A, Gómez-Martín C, Giannoukakos S, Jaspez D, Medina JM, Zubkovic A, Jurak I, Fromm B, Marchal JA, Oliver J, Hackenberg M.

Nucleic Acids Res. 2019 May 22. pii: gkz415. doi: 10.1093/nar/gkz415. [Epub ahead of print]

PMID:
31114926
2.

Integrative genomic analysis of peritoneal malignant mesothelioma: understanding a case with extraordinary chemotherapy response.

Lund-Andersen C, Nakken S, Nygård S, Fromm B, Aasheim LB, Davidson B, Julsrud L, Abrahamsen TW, Kristensen AT, Dybdahl B, Larsen SG, Hovig E, Flatmark K.

Cold Spring Harb Mol Case Stud. 2019 Apr 1;5(2). pii: a003566. doi: 10.1101/mcs.a003566. Print 2019 Apr.

3.

Exploration of extracellular vesicles from Ascaris suum provides evidence of parasite-host cross talk.

Hansen EP, Fromm B, Andersen SD, Marcilla A, Andersen KL, Borup A, Williams AR, Jex AR, Gasser RB, Young ND, Hall RS, Stensballe A, Ovchinnikov V, Yan Y, Fredholm M, Thamsborg SM, Nejsum P.

J Extracell Vesicles. 2019 Feb 14;8(1):1578116. doi: 10.1080/20013078.2019.1578116. eCollection 2019.

4.

Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha).

Fromm B, Tosar JP, Aguilera F, Friedländer MR, Bachmann L, Hejnol A.

Noncoding RNA. 2019 Feb 22;5(1). pii: E19. doi: 10.3390/ncrna5010019.

5.

miRTrace reveals the organismal origins of microRNA sequencing data.

Kang W, Eldfjell Y, Fromm B, Estivill X, Biryukova I, Friedländer MR.

Genome Biol. 2018 Dec 4;19(1):213. doi: 10.1186/s13059-018-1588-9.

6.

Unicellular Origin of the Animal MicroRNA Machinery.

Bråte J, Neumann RS, Fromm B, Haraldsen AAB, Tarver JE, Suga H, Donoghue PCJ, Peterson KJ, Ruiz-Trillo I, Grini PE, Shalchian-Tabrizi K.

Curr Biol. 2018 Oct 22;28(20):3288-3295.e5. doi: 10.1016/j.cub.2018.08.018. Epub 2018 Oct 11.

7.

Plant microRNAs in human sera are likely contaminants.

Fromm B, Kang W, Rovira C, Cayota A, Witwer K, Friedländer MR, Tosar JP.

J Nutr Biochem. 2019 Mar;65:139-140. doi: 10.1016/j.jnutbio.2018.07.019. Epub 2018 Sep 5. No abstract available.

PMID:
30266285
8.

Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, Fromm B, Peterson KJ, Scaria V, Sivasubbu S, Pillai B.

PLoS One. 2018 Sep 27;13(9):e0204234. doi: 10.1371/journal.pone.0204234. eCollection 2018.

9.

Human and Cow Have Identical miR-21-5p and miR-30a-5p Sequences, Which Are Likely Unsuited to Study Dietary Uptake from Cow Milk.

Fromm B, Tosar JP, Lu Y, Halushka MK, Witwer KW.

J Nutr. 2018 Sep 1;148(9):1506-1507. doi: 10.1093/jn/nxy144. No abstract available.

PMID:
30184228
10.

Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss.

Tarver JE, Taylor RS, Puttick MN, Lloyd GT, Pett W, Fromm B, Schirrmeister BE, Pisani D, Peterson KJ, Donoghue PCJ.

Genome Biol Evol. 2018 Jun 1;10(6):1457-1470. doi: 10.1093/gbe/evy096.

11.

[Rehabilitation after Traumatic Fracture of Thoracic and Lumbar Spine].

Bork H, Simmel S, Böhle E, Ernst U, Fischer K, Fromm B, Glaesener JJ, Greitemann B, Krause P, Panning S, Pullwitt V, Schmidt J, Veihelmann A, Vogt L.

Z Orthop Unfall. 2018 Oct;156(5):533-540. doi: 10.1055/a-0591-6712. Epub 2018 May 18. German.

PMID:
29775977
12.

Big Strides in Cellular MicroRNA Expression.

Halushka MK, Fromm B, Peterson KJ, McCall MN.

Trends Genet. 2018 Mar;34(3):165-167. doi: 10.1016/j.tig.2017.12.015. Epub 2018 Jan 18. Review.

13.

A comprehensive profile of circulating RNAs in human serum.

Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB.

RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8.

14.

Identification of non-invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes.

Rodríguez M, Bajo-Santos C, Hessvik NP, Lorenz S, Fromm B, Berge V, Sandvig K, Linē A, Llorente A.

Mol Cancer. 2017 Oct 5;16(1):156. doi: 10.1186/s12943-017-0726-4.

15.

Extreme conservation of miRNA complements in opisthorchiids.

Ovchinnikov VY, Mordvinov VA, Fromm B.

Parasitol Int. 2017 Dec;66(6):773-776. doi: 10.1016/j.parint.2017.09.006. Epub 2017 Sep 12.

PMID:
28916307
16.

Atp8 is in the ground pattern of flatworm mitochondrial genomes.

Egger B, Bachmann L, Fromm B.

BMC Genomics. 2017 May 26;18(1):414. doi: 10.1186/s12864-017-3807-2.

17.

GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.

Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK.

Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032.

18.

Pathway-based classification of breast cancer subtypes.

Graudenzi A, Cava C, Bertoli G, Fromm B, Flatmark K, Mauri G, Castiglioni I.

Front Biosci (Landmark Ed). 2017 Jun 1;22:1697-1712.

PMID:
28410140
19.

The microRNA toolkit of insects.

Ylla G, Fromm B, Piulachs MD, Belles X.

Sci Rep. 2016 Nov 24;6:37736. doi: 10.1038/srep37736.

20.

On the presence and immunoregulatory functions of extracellular microRNAs in the trematode Fasciola hepatica.

Fromm B, Ovchinnikov V, Høye E, Bernal D, Hackenberg M, Marcilla A.

Parasite Immunol. 2017 Feb;39(2). doi: 10.1111/pim.12399. Review.

21.

microRNAs as cancer biomarkers.

Flatmark K, Høye E, Fromm B.

Scand J Clin Lab Invest Suppl. 2016;245:S80-3. doi: 10.1080/00365513.2016.1210330. Epub 2016 Aug 9.

PMID:
27542003
22.

Deciphering the function of non-coding RNAs in prostate cancer.

Ramalho-Carvalho J, Fromm B, Henrique R, Jerónimo C.

Cancer Metastasis Rev. 2016 Jun;35(2):235-62. doi: 10.1007/s10555-016-9628-y. Review.

PMID:
27221068
23.

The mitochondrial genome of the egg-laying flatworm Aglaiogyrodactylus forficulatus (Platyhelminthes: Monogenoidea).

Bachmann L, Fromm B, Patella de Azambuja L, Boeger WA.

Parasit Vectors. 2016 May 17;9(1):285. doi: 10.1186/s13071-016-1586-2.

24.

Subtype-specific micro-RNA expression signatures in breast cancer progression.

Haakensen VD, Nygaard V, Greger L, Aure MR, Fromm B, Bukholm IR, Lüders T, Chin SF, Git A, Caldas C, Kristensen VN, Brazma A, Børresen-Dale AL, Hovig E, Helland Å.

Int J Cancer. 2016 Sep 1;139(5):1117-28. doi: 10.1002/ijc.30142. Epub 2016 May 9.

25.

Noninvasive cardiac output estimation by inert gas rebreathing in pediatric and congenital heart disease.

Marma AK, Opotowsky AR, Fromm BS, Ubeda-Tikkanen A, Porras D, Rhodes J.

Am Heart J. 2016 Apr;174:80-8. doi: 10.1016/j.ahj.2016.01.006. Epub 2016 Jan 19.

PMID:
26995373
26.

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.

Fromm B, Billipp T, Peck LE, Johansen M, Tarver JE, King BL, Newcomb JM, Sempere LF, Flatmark K, Hovig E, Peterson KJ.

Annu Rev Genet. 2015;49:213-42. doi: 10.1146/annurev-genet-120213-092023. Epub 2015 Oct 14. Review.

27.

The revised microRNA complement of Fasciola hepatica reveals a plethora of overlooked microRNAs and evidence for enrichment of immuno-regulatory microRNAs in extracellular vesicles.

Fromm B, Trelis M, Hackenberg M, Cantalapiedra F, Bernal D, Marcilla A.

Int J Parasitol. 2015 Sep;45(11):697-702. doi: 10.1016/j.ijpara.2015.06.002. Epub 2015 Jul 13.

PMID:
26183562
28.

MicroRNA loci support conspecificity of Gyrodactylus salaris and Gyrodactylus thymalli (Platyhelminthes: Monogenea).

Fromm B, Burow S, Hahn C, Bachmann L.

Int J Parasitol. 2014 Oct 1;44(11):787-93. doi: 10.1016/j.ijpara.2014.05.010. Epub 2014 Jul 3.

PMID:
24998346
29.

Comparative genomics of flatworms (platyhelminthes) reveals shared genomic features of ecto- and endoparastic neodermata.

Hahn C, Fromm B, Bachmann L.

Genome Biol Evol. 2014 May;6(5):1105-17. doi: 10.1093/gbe/evu078.

30.

Substantial loss of conserved and gain of novel MicroRNA families in flatworms.

Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L.

Mol Biol Evol. 2013 Dec;30(12):2619-28. doi: 10.1093/molbev/mst155. Epub 2013 Sep 11.

31.
32.

A proteomic approach for studying insect phylogeny: CAPA peptides of ancient insect taxa (Dictyoptera, Blattoptera) as a test case.

Roth S, Fromm B, Gäde G, Predel R.

BMC Evol Biol. 2009 Mar 3;9:50. doi: 10.1186/1471-2148-9-50.

33.

Extended FMRFamides in dipteran insects: conservative expression in the neuroendocrine system is accompanied by rapid sequence evolution.

Rahman MM, Fromm B, Neupert S, Kreusch S, Predel R.

Gen Comp Endocrinol. 2009 May 15;162(1):52-8. doi: 10.1016/j.ygcen.2008.08.006. Epub 2008 Aug 26.

PMID:
18789334
34.

Changes of basic bone turnover parameters in short-term and long-term patients with spinal cord injury.

Reiter AL, Volk A, Vollmar J, Fromm B, Gerner HJ.

Eur Spine J. 2007 Jun;16(6):771-6. Epub 2006 Jul 8.

35.
36.

[The Freehand System: an implantable neuroprosthesis for functional electrostimulation of the upper extremity].

Fromm B, Rupp R, Gerner HJ.

Handchir Mikrochir Plast Chir. 2001 May;33(3):149-52. German.

PMID:
11468891
37.
38.

Ascending myelopathy in the early stage of spinal cord injury.

Aito S, El Masry WS, Gerner HJ, Lorenzo ND, Pellicanò G, D'Andrea M, Fromm B, Freund M.

Spinal Cord. 1999 Sep;37(9):617-23.

PMID:
10490852
39.

Management of respiratory problems unique to high tetraplegia.

Fromm B, Hundt G, Gerner HJ, Baer GA, Exner G, Bötel U, Naumann CP, Baumberger ME, Zäch G.

Spinal Cord. 1999 Apr;37(4):239-44. No abstract available.

PMID:
10338342
40.

Functional hand development in tetraplegia.

Doll U, Maurer-Burkhard B, Spahn B, Fromm B.

Spinal Cord. 1998 Dec;36(12):818-21.

PMID:
9881729
41.

Long-term survival of patients with coronary artery disease and left ventricular dysfunction: implications for the role of myocardial viability assessment in management decisions.

Di Carli MF, Maddahi J, Rokhsar S, Schelbert HR, Bianco-Batlles D, Brunken RC, Fromm B.

J Thorac Cardiovasc Surg. 1998 Dec;116(6):997-1004.

42.

Maximal ascending and descending slopes of the T wave in men and women.

Yang H, Elko P, Fromm BS, Baga JJ, Pires LA, Schuger CD, Steinman RT, Lehmann MH.

J Electrocardiol. 1997 Oct;30(4):267-76. Erratum in: J Electrocardiol 2001 Apr;34(2):183.

PMID:
9375902
43.

Unrecognized paroxysmal supraventricular tachycardia. Potential for misdiagnosis as panic disorder.

Lessmeier TJ, Gamperling D, Johnson-Liddon V, Fromm BS, Steinman RT, Meissner MD, Lehmann MH.

Arch Intern Med. 1997 Mar 10;157(5):537-43.

PMID:
9066458
44.

Retrospective comparative study of primary intracoronary stenting versus balloon angioplasty for acute myocardial infarction.

Turi ZG, McGinnity JG, Fischman D, Kreiner MJ, Glazier JJ, Rehmann D, Fromm BS.

Cathet Cardiovasc Diagn. 1997 Mar;40(3):235-9.

PMID:
9062712
45.

Age-gender influence on the rate-corrected QT interval and the QT-heart rate relation in families with genotypically characterized long QT syndrome.

Lehmann MH, Timothy KW, Frankovich D, Fromm BS, Keating M, Locati EH, Taggart RT, Towbin JA, Moss AJ, Schwartz PJ, Vincent GM.

J Am Coll Cardiol. 1997 Jan;29(1):93-9.

46.

[Projections and fiber characteristics of sensory afferents of the anterior cruciate ligament in an animal experiment].

Parsch D, Fromm B, Kummer W.

Unfallchirurgie. 1996 Oct;22(5):193-201. German.

PMID:
9005672
47.

Probucol-associated tachyarrhythmic events and QT prolongation: importance of gender.

Reinoehl J, Frankovich D, Machado C, Kawasaki R, Baga JJ, Pires LA, Steinman RT, Fromm BS, Lehmann MH.

Am Heart J. 1996 Jun;131(6):1184-91.

PMID:
8644599
49.

Increased propensity of women to develop torsades de pointes during complete heart block.

Kawasaki R, Machado C, Reinoehl J, Fromm B, Baga JJ, Steinman RT, Lehmann MH.

J Cardiovasc Electrophysiol. 1995 Nov;6(11):1032-8.

PMID:
8589872
50.

[Demonstration of the blood supply of human cruciate ligaments using the plastination method].

Simank HG, Graf J, Schneider U, Fromm B, Niethard FU.

Z Orthop Ihre Grenzgeb. 1995 Jan-Feb;133(1):39-42. German.

PMID:
7886998

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