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Items: 49

1.

Response to growth hormone in patients with RNPC3 mutations.

Martos-Moreno GÁ, Travieso-Suárez L, Pozo-Román J, Muñoz-Calvo MT, Chowen JA, Frilander MJ, Pérez-Jurado LA, Hawkins FG, Argente J.

EMBO Mol Med. 2018 Jul;10(7). pii: e9143. doi: 10.15252/emmm.201809143. No abstract available.

2.

IntEREst: intron-exon retention estimator.

Oghabian A, Greco D, Frilander MJ.

BMC Bioinformatics. 2018 Apr 11;19(1):130. doi: 10.1186/s12859-018-2122-5.

3.

Mutations in the U11/U12-65K protein associated with isolated growth hormone deficiency lead to structural destabilization and impaired binding of U12 snRNA.

Norppa AJ, Kauppala TM, Heikkinen HA, Verma B, Iwaï H, Frilander MJ.

RNA. 2018 Mar;24(3):396-409. doi: 10.1261/rna.062844.117. Epub 2017 Dec 18.

PMID:
29255062
4.

Minor spliceosome and disease.

Verma B, Akinyi MV, Norppa AJ, Frilander MJ.

Semin Cell Dev Biol. 2018 Jul;79:103-112. doi: 10.1016/j.semcdb.2017.09.036. Epub 2017 Dec 14. Review.

5.

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L.

Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19.

PMID:
28746735
6.

Alternative exon definition events control the choice between nuclear retention and cytoplasmic export of U11/U12-65K mRNA.

Verbeeren J, Verma B, Niemelä EH, Yap K, Makeyev EV, Frilander MJ.

PLoS Genet. 2017 May 26;13(5):e1006824. doi: 10.1371/journal.pgen.1006824. eCollection 2017 May.

7.

Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland.

Susi H, Laine AL, Filloux D, Kraberger S, Farkas K, Bernardo P, Frilander MJ, Martin DP, Varsani A, Roumagnac P.

Arch Virol. 2017 Jul;162(7):2041-2045. doi: 10.1007/s00705-017-3298-0. Epub 2017 Mar 10.

PMID:
28283818
8.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2017 Jan 31;4:170006. doi: 10.1038/sdata.2017.6. No abstract available.

9.

Complete androgen insensitivity syndrome caused by a deep intronic pseudoexon-activating mutation in the androgen receptor gene.

Känsäkoski J, Jääskeläinen J, Jääskeläinen T, Tommiska J, Saarinen L, Lehtonen R, Hautaniemi S, Frilander MJ, Palvimo JJ, Toppari J, Raivio T.

Sci Rep. 2016 Sep 9;6:32819. doi: 10.1038/srep32819.

10.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Erratum in: Sci Data. 2017 Jan 31;4:170006. Rush, Douglas [corrected to Rusch, Douglas B].

11.

Evolutionarily conserved exon definition interactions with U11 snRNP mediate alternative splicing regulation on U11-48K and U11/U12-65K genes.

Niemelä EH, Verbeeren J, Singha P, Nurmi V, Frilander MJ.

RNA Biol. 2015;12(11):1256-64. doi: 10.1080/15476286.2015.1096489.

12.

Temperature- and sex-related effects of serine protease alleles on larval development in the Glanville fritillary butterfly.

Ahola V, Koskinen P, Wong SC, Kvist J, Paulin L, Auvinen P, Saastamoinen M, Frilander MJ, Lehtonen R, Hanski I.

J Evol Biol. 2015 Dec;28(12):2224-35. doi: 10.1111/jeb.12745. Epub 2015 Sep 22.

13.

Flight-induced changes in gene expression in the Glanville fritillary butterfly.

Kvist J, Mattila AL, Somervuo P, Ahola V, Koskinen P, Paulin L, Salmela L, Fountain T, Rastas P, Ruokolainen A, Taipale M, Holm L, Auvinen P, Lehtonen R, Frilander MJ, Hanski I.

Mol Ecol. 2015 Oct;24(19):4886-900. doi: 10.1111/mec.13359.

PMID:
26331775
14.

Regulation of gene expression through inefficient splicing of U12-type introns.

Niemelä EH, Frilander MJ.

RNA Biol. 2014;11(11):1325-9. doi: 10.1080/15476286.2014.996454.

15.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

16.

Transcriptome analysis reveals signature of adaptation to landscape fragmentation.

Somervuo P, Kvist J, Ikonen S, Auvinen P, Paulin L, Koskinen P, Holm L, Taipale M, Duplouy A, Ruokolainen A, Saarnio S, Sirén J, Kohonen J, Corander J, Frilander MJ, Ahola V, Hanski I.

PLoS One. 2014 Jul 2;9(7):e101467. doi: 10.1371/journal.pone.0101467. eCollection 2014. Erratum in: PLoS One. 2014;9(7):e104668.

17.

Global analysis of the nuclear processing of transcripts with unspliced U12-type introns by the exosome.

Niemelä EH, Oghabian A, Staals RH, Greco D, Pruijn GJ, Frilander MJ.

Nucleic Acids Res. 2014 Jun;42(11):7358-69. doi: 10.1093/nar/gku391. Epub 2014 May 21.

18.

Virus-encapsulated DNA origami nanostructures for cellular delivery.

Mikkilä J, Eskelinen AP, Niemelä EH, Linko V, Frilander MJ, Törmä P, Kostiainen MA.

Nano Lett. 2014;14(4):2196-200. doi: 10.1021/nl500677j. Epub 2014 Mar 19.

PMID:
24627955
19.

Defective minor spliceosome mRNA processing results in isolated familial growth hormone deficiency.

Argente J, Flores R, Gutiérrez-Arumí A, Verma B, Martos-Moreno GÁ, Cuscó I, Oghabian A, Chowen JA, Frilander MJ, Pérez-Jurado LA.

EMBO Mol Med. 2014 Mar;6(3):299-306. doi: 10.1002/emmm.201303573. Epub 2014 Jan 30.

20.

Identification and validation of human papillomavirus encoded microRNAs.

Qian K, Pietilä T, Rönty M, Michon F, Frilander MJ, Ritari J, Tarkkanen J, Paulín L, Auvinen P, Auvinen E.

PLoS One. 2013 Jul 30;8(7):e70202. doi: 10.1371/journal.pone.0070202. Print 2013.

21.

HnRNPH1/H2, U1 snRNP, and U11 snRNP cooperate to regulate the stability of the U11-48K pre-mRNA.

Turunen JJ, Verma B, Nyman TA, Frilander MJ.

RNA. 2013 Mar;19(3):380-9. doi: 10.1261/rna.036715.112. Epub 2013 Jan 18.

22.

SNP design from 454 sequencing of Podosphaera plantaginis transcriptome reveals a genetically diverse pathogen metapopulation with high levels of mixed-genotype infection.

Tollenaere C, Susi H, Nokso-Koivisto J, Koskinen P, Tack A, Auvinen P, Paulin L, Frilander MJ, Lehtonen R, Laine AL.

PLoS One. 2012;7(12):e52492. doi: 10.1371/journal.pone.0052492. Epub 2012 Dec 27.

23.

The significant other: splicing by the minor spliceosome.

Turunen JJ, Niemelä EH, Verma B, Frilander MJ.

Wiley Interdiscip Rev RNA. 2013 Jan-Feb;4(1):61-76. doi: 10.1002/wrna.1141. Epub 2012 Oct 16. Review.

24.

Temperature treatments during larval development reveal extensive heritable and plastic variation in gene expression and life history traits.

Kvist J, Wheat CW, Kallioniemi E, Saastamoinen M, Hanski I, Frilander MJ.

Mol Ecol. 2013 Feb;22(3):602-19. doi: 10.1111/j.1365-294X.2012.05521.x. Epub 2012 Mar 19.

PMID:
22429304
25.

Genetics. Minor splicing, disrupted.

Pessa HK, Frilander MJ.

Science. 2011 Apr 8;332(6026):184-5. doi: 10.1126/science.1205503. No abstract available.

PMID:
21474744
26.

Functional genomics of life history variation in a butterfly metapopulation.

Wheat CW, Fescemyer HW, Kvist J, Tas E, Vera JC, Frilander MJ, Hanski I, Marden JH.

Mol Ecol. 2011 May;20(9):1813-28. doi: 10.1111/j.1365-294X.2011.05062.x. Epub 2011 Mar 17.

PMID:
21410806
27.

Missing-in-metastasis MIM/MTSS1 promotes actin assembly at intercellular junctions and is required for integrity of kidney epithelia.

Saarikangas J, Mattila PK, Varjosalo M, Bovellan M, Hakanen J, Calzada-Wack J, Tost M, Jennen L, Rathkolb B, Hans W, Horsch M, Hyvönen ME, Perälä N, Fuchs H, Gailus-Durner V, Esposito I, Wolf E, de Angelis MH, Frilander MJ, Savilahti H, Sariola H, Sainio K, Lehtonen S, Taipale J, Salminen M, Lappalainen P.

J Cell Sci. 2011 Apr 15;124(Pt 8):1245-55. doi: 10.1242/jcs.082610. Epub 2011 Mar 15.

28.

Requirement of TFIIH kinase subunit Mat1 for RNA Pol II C-terminal domain Ser5 phosphorylation, transcription and mRNA turnover.

Helenius K, Yang Y, Tselykh TV, Pessa HK, Frilander MJ, Mäkelä TP.

Nucleic Acids Res. 2011 Jul;39(12):5025-35. doi: 10.1093/nar/gkr107. Epub 2011 Mar 8.

29.

Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways.

Pessa HK, Greco D, Kvist J, Wahlström G, Heino TI, Auvinen P, Frilander MJ.

PLoS One. 2010 Oct 11;5(10):e13215. doi: 10.1371/journal.pone.0013215.

30.

An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing.

Verbeeren J, Niemelä EH, Turunen JJ, Will CL, Ravantti JJ, Lührmann R, Frilander MJ.

Mol Cell. 2010 Mar 26;37(6):821-33. doi: 10.1016/j.molcel.2010.02.014.

31.

Tooth morphogenesis and ameloblast differentiation are regulated by micro-RNAs.

Michon F, Tummers M, Kyyrönen M, Frilander MJ, Thesleff I.

Dev Biol. 2010 Apr 15;340(2):355-68. doi: 10.1016/j.ydbio.2010.01.019. Epub 2010 Jan 25.

32.

Tudor staphylococcal nuclease is an evolutionarily conserved component of the programmed cell death degradome.

Sundström JF, Vaculova A, Smertenko AP, Savenkov EI, Golovko A, Minina E, Tiwari BS, Rodriguez-Nieto S, Zamyatnin AA Jr, Välineva T, Saarikettu J, Frilander MJ, Suarez MF, Zavialov A, Ståhl U, Hussey PJ, Silvennoinen O, Sundberg E, Zhivotovsky B, Bozhkov PV.

Nat Cell Biol. 2009 Nov;11(11):1347-54. doi: 10.1038/ncb1979. Epub 2009 Oct 11.

PMID:
19820703
33.

Nucleotide polymorphism at a gene (Pgi) under balancing selection in a butterfly metapopulation.

Wheat CW, Haag CR, Marden JH, Hanski I, Frilander MJ.

Mol Biol Evol. 2010 Feb;27(2):267-81. doi: 10.1093/molbev/msp227. Epub 2009 Sep 30.

PMID:
19793833
34.

Fitness differences associated with Pgi SNP genotypes in the Glanville fritillary butterfly (Melitaea cinxia).

Orsini L, Wheat CW, Haag CR, Kvist J, Frilander MJ, Hanski I.

J Evol Biol. 2009 Feb;22(2):367-75. doi: 10.1111/j.1420-9101.2008.01653.x. Epub 2008 Nov 15.

35.

Weight and nutrition affect pre-mRNA splicing of a muscle gene associated with performance, energetics and life history.

Marden JH, Fescemyer HW, Saastamoinen M, MacFarland SP, Vera JC, Frilander MJ, Hanski I.

J Exp Biol. 2008 Dec;211(Pt 23):3653-60. doi: 10.1242/jeb.023903.

36.

Bacteriophage Mu integration in yeast and mammalian genomes.

Paatero AO, Turakainen H, Happonen LJ, Olsson C, Palomäki T, Pajunen MI, Meng X, Otonkoski T, Tuuri T, Berry C, Malani N, Frilander MJ, Bushman FD, Savilahti H.

Nucleic Acids Res. 2008 Dec;36(22):e148. doi: 10.1093/nar/gkn801. Epub 2008 Oct 25.

37.

Minor spliceosome components are predominantly localized in the nucleus.

Pessa HK, Will CL, Meng X, Schneider C, Watkins NJ, Perälä N, Nymark M, Turunen JJ, Lührmann R, Frilander MJ.

Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8655-60. doi: 10.1073/pnas.0803646105. Epub 2008 Jun 16.

38.

The U11-48K protein contacts the 5' splice site of U12-type introns and the U11-59K protein.

Turunen JJ, Will CL, Grote M, Lührmann R, Frilander MJ.

Mol Cell Biol. 2008 May;28(10):3548-60. doi: 10.1128/MCB.01928-07. Epub 2008 Mar 17.

39.

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH.

Mol Ecol. 2008 Apr;17(7):1636-47. doi: 10.1111/j.1365-294X.2008.03666.x. Epub 2008 Feb 5.

PMID:
18266620
40.

Transcriptional co-activator protein p100 interacts with snRNP proteins and facilitates the assembly of the spliceosome.

Yang J, Välineva T, Hong J, Bu T, Yao Z, Jensen ON, Frilander MJ, Silvennoinen O.

Nucleic Acids Res. 2007;35(13):4485-94. Epub 2007 Jun 18.

41.

The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns.

Pessa HK, Ruokolainen A, Frilander MJ.

RNA. 2006 Oct;12(10):1883-92. Epub 2006 Sep 6.

43.

Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila.

Schneider C, Will CL, Brosius J, Frilander MJ, Lührmann R.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9584-9. Epub 2004 Jun 21.

44.

[RNA--the original chemistry of life].

Frilander MJ.

Duodecim. 2002;118(23):2419-22. Finnish. No abstract available.

PMID:
12572270
45.
46.

[Ribosome proved to be a RNA enzyme].

Frilander MJ.

Duodecim. 2001;117(2):133-4. Finnish. No abstract available.

PMID:
12092363
47.

Branchpoint selection in the splicing of U12-dependent introns in vitro.

McConnell TS, Cho SJ, Frilander MJ, Steitz JA.

RNA. 2002 May;8(5):579-86.

48.
49.

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