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Research advances in the Pyrenophora teres-barley interaction.

Clare SJ, Wyatt NA, Brueggeman RS, Friesen TL.

Mol Plant Pathol. 2020 Feb;21(2):272-288. doi: 10.1111/mpp.12896. Epub 2019 Dec 13. Review.


Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States.

Richards JK, Stukenbrock EH, Carpenter J, Liu Z, Cowger C, Faris JD, Friesen TL.

PLoS Genet. 2019 Oct 18;15(10):e1008223. doi: 10.1371/journal.pgen.1008223. eCollection 2019 Oct.


A Comparative Genomic Analysis of the Barley Pathogen Pyrenophora teres f. teres Identifies Subtelomeric Regions as Drivers of Virulence.

Wyatt NA, Richards JK, Brueggeman RS, Friesen TL.

Mol Plant Microbe Interact. 2020 Feb;33(2):173-188. doi: 10.1094/MPMI-05-19-0128-R. Epub 2019 Nov 13.


Mapping and characterization of two stem rust resistance genes derived from cultivated emmer wheat accession PI 193883.

Sharma JS, Zhang Q, Rouse MN, Klindworth DL, Friesen TL, Long Y, Olivera PD, Jin Y, McClean PE, Xu SS, Faris JD.

Theor Appl Genet. 2019 Nov;132(11):3177-3189. doi: 10.1007/s00122-019-03417-x. Epub 2019 Sep 7.


Mapping of barley susceptibility/resistance QTL against spot form net blotch caused by Pyrenophora teres f. maculata using RIL populations.

Tamang P, Richards JK, Alhashal A, Sharma Poudel R, Horsley RD, Friesen TL, Brueggeman RS.

Theor Appl Genet. 2019 Jul;132(7):1953-1963. doi: 10.1007/s00122-019-03328-x. Epub 2019 Mar 20.


Genetics of Variable Disease Expression Conferred by Inverse Gene-For-Gene Interactions in the Wheat-Parastagonospora nodorum Pathosystem.

Peters Haugrud AR, Zhang Z, Richards JK, Friesen TL, Faris JD.

Plant Physiol. 2019 May;180(1):420-434. doi: 10.1104/pp.19.00149. Epub 2019 Mar 11.


Genetic Diversity and Resistance to Fusarium Head Blight in Synthetic Hexaploid Wheat Derived From Aegilops tauschii and Diverse Triticum turgidum Subspecies.

Szabo-Hever A, Zhang Q, Friesen TL, Zhong S, Elias EM, Cai X, Jin Y, Faris JD, Chao S, Xu SS.

Front Plant Sci. 2018 Dec 11;9:1829. doi: 10.3389/fpls.2018.01829. eCollection 2018.


ToxA Is Present in the U.S. Bipolaris sorokiniana Population and Is a Significant Virulence Factor on Wheat Harboring Tsn1.

Friesen TL, Holmes DJ, Bowden RL, Faris JD.

Plant Dis. 2018 Dec;102(12):2446-2452. doi: 10.1094/PDIS-03-18-0521-RE. Epub 2018 Sep 24.


Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution.

Syme RA, Tan KC, Rybak K, Friesen TL, McDonald BA, Oliver RP, Hane JK.

Genome Biol Evol. 2018 Sep 1;10(9):2443-2457. doi: 10.1093/gbe/evy192.


Transposable Element Genomic Fissuring in Pyrenophora teres Is Associated With Genome Expansion and Dynamics of Host-Pathogen Genetic Interactions.

Syme RA, Martin A, Wyatt NA, Lawrence JA, Muria-Gonzalez MJ, Friesen TL, Ellwood SR.

Front Genet. 2018 Apr 18;9:130. doi: 10.3389/fgene.2018.00130. eCollection 2018.


Reference Quality Genome Assemblies of Three Parastagonospora nodorum Isolates Differing in Virulence on Wheat.

Richards JK, Wyatt NA, Liu Z, Faris JD, Friesen TL.

G3 (Bethesda). 2018 Feb 2;8(2):393-399. doi: 10.1534/g3.117.300462.


Reference Assembly and Annotation of the Pyrenophora teres f. teres Isolate 0-1.

Wyatt NA, Richards JK, Brueggeman RS, Friesen TL.

G3 (Bethesda). 2018 Jan 4;8(1):1-8. doi: 10.1534/g3.117.300196.


Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis.

Ameen G, Kariyawasam G, Shi G, Friesen TL, Faris JD, Ali S, Rasmussen JB, Liu Z.

Fungal Genet Biol. 2017 Dec;109:16-25. doi: 10.1016/j.fgb.2017.10.004. Epub 2017 Oct 16.


Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25×FGOH04Ptt-21.

Koladia VM, Richards JK, Wyatt NA, Faris JD, Brueggeman RS, Friesen TL.

Fungal Genet Biol. 2017 Oct;107:12-19. doi: 10.1016/j.fgb.2017.07.003. Epub 2017 Jul 17.


Characterizing the Pyrenophora teres f. maculata-Barley Interaction Using Pathogen Genetics.

Carlsen SA, Neupane A, Wyatt NA, Richards JK, Faris JD, Xu SS, Brueggeman RS, Friesen TL.

G3 (Bethesda). 2017 Aug 7;7(8):2615-2626. doi: 10.1534/g3.117.043265.


Mapping of SnTox3-Snn3 as a major determinant of field susceptibility to Septoria nodorum leaf blotch in the SHA3/CBRD × Naxos population.

Ruud AK, Windju S, Belova T, Friesen TL, Lillemo M.

Theor Appl Genet. 2017 Jul;130(7):1361-1374. doi: 10.1007/s00122-017-2893-5. Epub 2017 Apr 1.


Association mapping utilizing diverse barley lines reveals net form net blotch seedling resistance/susceptibility loci.

Richards JK, Friesen TL, Brueggeman RS.

Theor Appl Genet. 2017 May;130(5):915-927. doi: 10.1007/s00122-017-2860-1. Epub 2017 Feb 9.


Nicotiana benthamiana as a nonhost of Zymoseptoria tritici.

Friesen TL.

New Phytol. 2017 Jan;213(1):7-9. doi: 10.1111/nph.14299. No abstract available.


The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease.

Shi G, Zhang Z, Friesen TL, Raats D, Fahima T, Brueggeman RS, Lu S, Trick HN, Liu Z, Chao W, Frenkel Z, Xu SS, Rasmussen JB, Faris JD.

Sci Adv. 2016 Oct 26;2(10):e1600822. eCollection 2016 Oct.


New Insights into the Roles of Host Gene-Necrotrophic Effector Interactions in Governing Susceptibility of Durum Wheat to Tan Spot and Septoria nodorum Blotch.

Virdi SK, Liu Z, Overlander ME, Zhang Z, Xu SS, Friesen TL, Faris JD.

G3 (Bethesda). 2016 Dec 7;6(12):4139-4150. doi: 10.1534/g3.116.036525.


Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P. teres f. teres isolates.

Koladia VM, Faris JD, Richards JK, Brueggeman RS, Chao S, Friesen TL.

Theor Appl Genet. 2017 Jan;130(1):163-173. doi: 10.1007/s00122-016-2801-4. Epub 2016 Oct 12.


Combating the Sigatoka Disease Complex on Banana.

Friesen TL.

PLoS Genet. 2016 Aug 11;12(8):e1006234. doi: 10.1371/journal.pgen.1006234. eCollection 2016 Aug. No abstract available.


Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors in Parastagonospora nodorum.

Gao Y, Liu Z, Faris JD, Richards J, Brueggeman RS, Li X, Oliver RP, McDonald BA, Friesen TL.

Phytopathology. 2016 Oct;106(10):1177-1185. Epub 2016 Aug 15.


SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual-function protein that facilitates infection while protecting from wheat-produced chitinases.

Liu Z, Gao Y, Kim YM, Faris JD, Shelver WL, de Wit PJ, Xu SS, Friesen TL.

New Phytol. 2016 Aug;211(3):1052-64. doi: 10.1111/nph.13959. Epub 2016 Apr 4.


Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat.

Yu G, Klindworth DL, Friesen TL, Faris JD, Zhong S, Rasmussen JB, Xu SS.

Theor Appl Genet. 2015 Dec;128(12):2367-74. doi: 10.1007/s00122-015-2590-1. Epub 2015 Aug 11.


Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat.

Shi G, Zhang Z, Friesen TL, Bansal U, Cloutier S, Wicker T, Rasmussen JB, Faris JD.

Mol Genet Genomics. 2016 Feb;291(1):107-19. doi: 10.1007/s00438-015-1091-x. Epub 2015 Jul 18.


FPLC and liquid-chromatography mass spectrometry identify candidate necrosis-inducing proteins from culture filtrates of the fungal wheat pathogen Zymoseptoria tritici.

Ben M'Barek S, Cordewener JH, Tabib Ghaffary SM, van der Lee TA, Liu Z, Mirzadi Gohari A, Mehrabi R, America AH, Robert O, Friesen TL, Hamza S, Stergiopoulos I, de Wit PJ, Kema GH.

Fungal Genet Biol. 2015 Jun;79:54-62. doi: 10.1016/j.fgb.2015.03.015.


Evaluation of a barley core collection for spot form net blotch reaction reveals distinct genotype-specific pathogen virulence and host susceptibility.

Neupane A, Tamang P, Brueggeman RS, Friesen TL.

Phytopathology. 2015 Apr;105(4):509-17. doi: 10.1094/PHYTO-04-14-0107-R.


Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum-Wheat Pathosystem.

Gao Y, Faris JD, Liu Z, Kim YM, Syme RA, Oliver RP, Xu SS, Friesen TL.

Mol Plant Microbe Interact. 2015 May;28(5):615-25. doi: 10.1094/MPMI-12-14-0396-R.


Identification and mapping of Sr46 from Aegilops tauschii accession CIae 25 conferring resistance to race TTKSK (Ug99) of wheat stem rust pathogen.

Yu G, Zhang Q, Friesen TL, Rouse MN, Jin Y, Zhong S, Rasmussen JB, Lagudah ES, Xu SS.

Theor Appl Genet. 2015 Mar;128(3):431-43. doi: 10.1007/s00122-014-2442-4. Epub 2014 Dec 19.


Pivoting from Arabidopsis to wheat to understand how agricultural plants integrate responses to biotic stress.

Harris MO, Friesen TL, Xu SS, Chen MS, Giron D, Stuart JJ.

J Exp Bot. 2015 Feb;66(2):513-31. doi: 10.1093/jxb/eru465. Epub 2014 Dec 11. Review.


Genotype-by-sequencing of the plant-pathogenic fungi Pyrenophora teres and Sphaerulina musiva utilizing Ion Torrent sequence technology.

Leboldus JM, Kinzer K, Richards J, Ya Z, Yan C, Friesen TL, Brueggeman R.

Mol Plant Pathol. 2015 Aug;16(6):623-32. doi: 10.1111/mpp.12214. Epub 2014 Dec 15.


Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H.

Shjerve RA, Faris JD, Brueggeman RS, Yan C, Zhu Y, Koladia V, Friesen TL.

Fungal Genet Biol. 2014 Sep;70:104-12. doi: 10.1016/j.fgb.2014.07.012. Epub 2014 Aug 2.


Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H.

Liu Z, Holmes DJ, Faris JD, Chao S, Brueggeman RS, Edwards MC, Friesen TL.

Mol Plant Pathol. 2015 Feb;16(2):188-200. doi: 10.1111/mpp.12172. Epub 2014 Aug 24.


A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat.

Lu S, Faris JD, Sherwood R, Friesen TL, Edwards MC.

Mol Plant Pathol. 2014 Sep;15(7):650-63. doi: 10.1111/mpp.12122. Epub 2014 Apr 15.


Resequencing and comparative genomics of Stagonospora nodorum: sectional gene absence and effector discovery.

Syme RA, Hane JK, Friesen TL, Oliver RP.

G3 (Bethesda). 2013 Jun 21;3(6):959-69. doi: 10.1534/g3.112.004994.


Global diversity and distribution of three necrotrophic effectors in Phaeosphaeria nodorum and related species.

McDonald MC, Oliver RP, Friesen TL, Brunner PC, McDonald BA.

New Phytol. 2013 Jul;199(1):241-51. doi: 10.1111/nph.12257. Epub 2013 Apr 4.


Phylogenetic and population genetic analyses of Phaeosphaeria nodorum and its close relatives indicate cryptic species and an origin in the Fertile Crescent.

McDonald MC, Razavi M, Friesen TL, Brunner PC, McDonald BA.

Fungal Genet Biol. 2012 Nov;49(11):882-95. doi: 10.1016/j.fgb.2012.08.001. Epub 2012 Aug 24.


SnTox5-Snn5: a novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions.

Friesen TL, Chu C, Xu SS, Faris JD.

Mol Plant Pathol. 2012 Dec;13(9):1101-9. doi: 10.1111/j.1364-3703.2012.00819.x. Epub 2012 Jul 25.


Introgression and characterization of a goatgrass gene for a high level of resistance to ug99 stem rust in tetraploid wheat.

Klindworth DL, Niu Z, Chao S, Friesen TL, Jin Y, Faris JD, Cai X, Xu SS.

G3 (Bethesda). 2012 Jun;2(6):665-73. doi: 10.1534/g3.112.002386. Epub 2012 Jun 1.


Stagonospora nodorum: from pathology to genomics and host resistance.

Oliver RP, Friesen TL, Faris JD, Solomon PS.

Annu Rev Phytopathol. 2012;50:23-43. doi: 10.1146/annurev-phyto-081211-173019. Epub 2012 May 1. Review.


Virulence profile and genetic structure of a North Dakota population of Pyrenophora teres f. teres, the causal agent of net form net blotch of barley.

Liu ZH, Zhong S, Stasko AK, Edwards MC, Friesen TL.

Phytopathology. 2012 May;102(5):539-46. doi: 10.1094/PHYTO-09-11-0243.


Novel necrotrophic effectors from Stagonospora nodorum and corresponding host sensitivities in winter wheat germplasm in the southeastern United States.

Crook AD, Friesen TL, Liu ZH, Ojiambo PS, Cowger C.

Phytopathology. 2012 May;102(5):498-505. doi: 10.1094/PHYTO-08-11-0238.


Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis.

Tan KC, Ferguson-Hunt M, Rybak K, Waters OD, Stanley WA, Bond CS, Stukenbrock EH, Friesen TL, Faris JD, McDonald BA, Oliver RP.

Mol Plant Microbe Interact. 2012 Apr;25(4):515-22. doi: 10.1094/MPMI-10-11-0273.


The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1.

Liu Z, Zhang Z, Faris JD, Oliver RP, Syme R, McDonald MC, McDonald BA, Solomon PS, Lu S, Shelver WL, Xu S, Friesen TL.

PLoS Pathog. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.ppat.1002467. Epub 2012 Jan 5.


Polyethylene glycol (PEG)-mediated transformation in filamentous fungal pathogens.

Liu Z, Friesen TL.

Methods Mol Biol. 2012;835:365-75. doi: 10.1007/978-1-61779-501-5_21.


Characterization of plant-fungal interactions involving necrotrophic effector-producing plant pathogens.

Friesen TL, Faris JD.

Methods Mol Biol. 2012;835:191-207. doi: 10.1007/978-1-61779-501-5_12.


Transcriptome analysis of Stagonospora nodorum: gene models, effectors, metabolism and pantothenate dispensability.

Ipcho SV, Hane JK, Antoni EA, Ahren D, Henrissat B, Friesen TL, Solomon PS, Oliver RP.

Mol Plant Pathol. 2012 Aug;13(6):531-45. doi: 10.1111/j.1364-3703.2011.00770.x. Epub 2011 Dec 6.


A functional genomics approach to dissect the mode of action of the Stagonospora nodorum effector protein SnToxA in wheat.

Vincent D, Du Fall LA, Livk A, Mathesius U, Lipscombe RJ, Oliver RP, Friesen TL, Solomon PS.

Mol Plant Pathol. 2012 Jun;13(5):467-82. doi: 10.1111/j.1364-3703.2011.00763.x. Epub 2011 Nov 24.


New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat.

Tabib Ghaffary SM, Faris JD, Friesen TL, Visser RG, van der Lee TA, Robert O, Kema GH.

Theor Appl Genet. 2012 Jan;124(1):125-42. doi: 10.1007/s00122-011-1692-7. Epub 2011 Sep 13.

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