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Items: 31

1.

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.

Fu S, Chang PL, Friesen ML, Teakle NL, Tarone AM, Sze SH.

BMC Genomics. 2019 Jun 6;20(Suppl 5):425. doi: 10.1186/s12864-019-5702-5.

2.

Mutualists Stabilize the Coexistence of Congeneric Legumes.

Siefert A, Zillig KW, Friesen ML, Strauss SY.

Am Nat. 2019 Feb;193(2):200-212. doi: 10.1086/701056. Epub 2018 Dec 26.

PMID:
30720367
3.

A high-throughput method of analyzing multiple plant defensive compounds in minimized sample mass.

Jack CN, Rowe SL, Porter SS, Friesen ML.

Appl Plant Sci. 2019 Jan 8;7(1):e01210. doi: 10.1002/aps3.1210. eCollection 2019 Jan.

4.

Unfair trade underground revealed by integrating data with Nash bargaining models.

Clark TJ, Friel CA, Grman E, Friesen ML, Shachar-Hill Y.

New Phytol. 2019 May;222(3):1325-1337. doi: 10.1111/nph.15703. Epub 2019 Feb 25.

PMID:
30671951
5.

To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere.

Smercina DN, Evans SE, Friesen ML, Tiemann LK.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02546-18. doi: 10.1128/AEM.02546-18. Print 2019 Mar 15. Review.

PMID:
30658971
6.

Rapid establishment of a flowering cline in Medicago polymorpha after invasion of North America.

Helliwell EE, Faber-Hammond J, Lopez ZC, Garoutte A, von Wettberg E, Friesen ML, Porter SS.

Mol Ecol. 2018 Dec;27(23):4758-4774. doi: 10.1111/mec.14898. Epub 2018 Dec 10.

PMID:
30325569
7.

Dynamic genomic architecture of mutualistic cooperation in a wild population of Mesorhizobium.

Porter SS, Faber-Hammond J, Montoya AP, Friesen ML, Sackos C.

ISME J. 2019 Feb;13(2):301-315. doi: 10.1038/s41396-018-0266-y. Epub 2018 Sep 14.

8.

Coercion in the Evolution of Plant-Microbe Communication: A Perspective.

Rowe SL, Norman JS, Friesen ML.

Mol Plant Microbe Interact. 2018 Aug;31(8):789-794. doi: 10.1094/MPMI-11-17-0276-CR. Epub 2018 Jun 6. Review.

PMID:
29474799
9.

Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.

von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, Vance L, Bergmann E, Lindsay D, Mamo BE, Warschefsky EJ, Dacosta-Calheiros E, Marques E, Yilmaz MA, Cakmak A, Rose J, Migneault A, Krieg CP, Saylak S, Temel H, Friesen ML, Siler E, Akhmetov Z, Ozcelik H, Kholova J, Can C, Gaur P, Yildirim M, Sharma H, Vadez V, Tesfaye K, Woldemedhin AF, Tar'an B, Aydogan A, Bukun B, Penmetsa RV, Berger J, Kahraman A, Nuzhdin SV, Cook DR.

Nat Commun. 2018 Feb 13;9(1):649. doi: 10.1038/s41467-018-02867-z.

10.

Co-invading symbiotic mutualists of Medicago polymorpha retain high ancestral diversity and contain diverse accessory genomes.

Porter SS, Faber-Hammond JJ, Friesen ML.

FEMS Microbiol Ecol. 2018 Jan 1;94(1). doi: 10.1093/femsec/fix168.

PMID:
29228264
11.

Rubrobacter spartanus sp. nov., a moderately thermophilic oligotrophic bacterium isolated from volcanic soil.

Norman JS, King GM, Friesen ML.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3597-3602. doi: 10.1099/ijsem.0.002175. Epub 2017 Sep 6.

PMID:
28875901
12.

Modelling nutritional mutualisms: challenges and opportunities for data integration.

Clark TJ, Friel CA, Grman E, Shachar-Hill Y, Friesen ML.

Ecol Lett. 2017 Sep;20(9):1203-1215. doi: 10.1111/ele.12810. Epub 2017 Jul 25. Review.

PMID:
28743172
13.

Research priorities for harnessing plant microbiomes in sustainable agriculture.

Busby PE, Soman C, Wagner MR, Friesen ML, Kremer J, Bennett A, Morsy M, Eisen JA, Leach JE, Dangl JL.

PLoS Biol. 2017 Mar 28;15(3):e2001793. doi: 10.1371/journal.pbio.2001793. eCollection 2017 Mar.

14.

Comment: Isolation and Screening of Bacteria for Their Diazotrophic Potential and Their Influence on Growth Promotion of Maize Seedlings in Greenhouses.

Norman JS, Hare JR, Friesen ML.

Front Plant Sci. 2017 Feb 28;8:212. doi: 10.3389/fpls.2017.00212. eCollection 2017. No abstract available.

15.

Synthesizing perspectives on the evolution of cooperation within and between species.

Barker JL, Bronstein JL, Friesen ML, Jones EI, Reeve HK, Zink AG, Frederickson ME.

Evolution. 2017 Apr;71(4):814-825. doi: 10.1111/evo.13174. Epub 2017 Feb 8. Review.

PMID:
28071790
16.

Complex N acquisition by soil diazotrophs: how the ability to release exoenzymes affects N fixation by terrestrial free-living diazotrophs.

Norman JS, Friesen ML.

ISME J. 2017 Feb;11(2):315-326. doi: 10.1038/ismej.2016.127. Epub 2016 Nov 29.

17.

Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium.

Porter SS, Chang PL, Conow CA, Dunham JP, Friesen ML.

ISME J. 2017 Jan;11(1):248-262. doi: 10.1038/ismej.2016.88. Epub 2016 Jul 15.

18.

Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula.

Moriuchi KS, Friesen ML, Cordeiro MA, Badri M, Vu WT, Main BJ, Aouani ME, Nuzhdin SV, Strauss SY, von Wettberg EJ.

PLoS One. 2016 Mar 4;11(3):e0150350. doi: 10.1371/journal.pone.0150350. eCollection 2016.

19.

Streptomyces thermoautotrophicus does not fix nitrogen.

MacKellar D, Lieber L, Norman JS, Bolger A, Tobin C, Murray JW, Oksaksin M, Chang RL, Ford TJ, Nguyen PQ, Woodward J, Permingeat HR, Joshi NS, Silver PA, Usadel B, Rutherford AW, Friesen ML, Prell J.

Sci Rep. 2016 Feb 1;6:20086. doi: 10.1038/srep20086.

20.

Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism.

Jones EI, Afkhami ME, Akçay E, Bronstein JL, Bshary R, Frederickson ME, Heath KD, Hoeksema JD, Ness JH, Pankey MS, Porter SS, Sachs JL, Scharnagl K, Friesen ML.

Ecol Lett. 2015 Nov;18(11):1270-1284. doi: 10.1111/ele.12507. Epub 2015 Sep 21. Review.

21.
22.

The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula.

Friesen ML, von Wettberg EJ, Badri M, Moriuchi KS, Barhoumi F, Chang PL, Cuellar-Ortiz S, Cordeiro MA, Vu WT, Arraouadi S, Djébali N, Zribi K, Badri Y, Porter SS, Aouani ME, Cook DR, Strauss SY, Nuzhdin SV.

BMC Genomics. 2014 Dec 22;15:1160. doi: 10.1186/1471-2164-15-1160.

23.

A cost-effective method for high-throughput construction of illumina sequencing libraries.

Dunham JP, Friesen ML.

Cold Spring Harb Protoc. 2013 Sep 1;2013(9):820-34. doi: 10.1101/pdb.prot074187.

24.

One hundred years of solitude: integrating single-strain inoculations with community perspectives in the legume-rhizobium symbiosis.

Friesen ML, Heath KD.

New Phytol. 2013 Apr;198(1):7-9. doi: 10.1111/nph.12173. Epub 2013 Jan 30. No abstract available.

25.

Genotype-phenotype mapping in a post-GWAS world.

Nuzhdin SV, Friesen ML, McIntyre LM.

Trends Genet. 2012 Sep;28(9):421-6. doi: 10.1016/j.tig.2012.06.003. Epub 2012 Jul 18.

26.

Widespread fitness alignment in the legume-rhizobium symbiosis.

Friesen ML.

New Phytol. 2012 Jun;194(4):1096-111. doi: 10.1111/j.1469-8137.2012.04099.x. Epub 2012 Mar 9.

27.

Modelling the evolution of mutualistic symbioses.

Friesen ML, Jones EI.

Methods Mol Biol. 2012;804:481-99. doi: 10.1007/978-1-61779-361-5_24. Review.

PMID:
22144168
28.

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV.

Plant J. 2010 Aug;63(4):623-35. doi: 10.1111/j.1365-313X.2010.04267.x.

29.

Adapting genomics to study the evolution and ecology of agricultural systems.

Friesen ML, von Wettberg EJ.

Curr Opin Plant Biol. 2010 Apr;13(2):119-25. doi: 10.1016/j.pbi.2009.11.003. Review.

PMID:
20022289
30.

Mixed infections may promote diversification of mutualistic symbionts: why are there ineffective rhizobia?

Friesen ML, Mathias A.

J Evol Biol. 2010 Feb;23(2):323-34. doi: 10.1111/j.1420-9101.2009.01902.x. Epub 2009 Dec 3.

31.

Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli.

Friesen ML, Saxer G, Travisano M, Doebeli M.

Evolution. 2004 Feb;58(2):245-60.

PMID:
15068343

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