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Items: 1 to 50 of 227

1.

Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain.

Miro E, Rossen JWA, Chlebowicz MA, Harmsen D, Brisse S, Passet V, Navarro F, Friedrich AW, García-Cobos S.

Front Microbiol. 2020 Jan 31;10:2961. doi: 10.3389/fmicb.2019.02961. eCollection 2019.

2.

Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity.

Hendriks ACA, Reubsaet FAG, Kooistra-Smid AMDM, Rossen JWA, Dutilh BE, Zomer AL, van den Beld MJC; IBESS group.

BMC Genomics. 2020 Feb 10;21(1):138. doi: 10.1186/s12864-020-6555-7.

3.

Marked Changes in Gut Microbiota in Cardio-Surgical Intensive Care Patients: A Longitudinal Cohort Study.

Aardema H, Lisotto P, Kurilshikov A, Diepeveen JRJ, Friedrich AW, Sinha B, de Smet AMGA, Harmsen HJM.

Front Cell Infect Microbiol. 2020 Jan 15;9:467. doi: 10.3389/fcimb.2019.00467. eCollection 2019.

4.

Decreasing prevalence of contamination with extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-E) in retail chicken meat in the Netherlands.

Huizinga P, Kluytmans-van den Bergh M, Rossen JW, Willemsen I, Verhulst C, Savelkoul PHM, Friedrich AW, García-Cobos S, Kluytmans J.

PLoS One. 2019 Dec 31;14(12):e0226828. doi: 10.1371/journal.pone.0226828. eCollection 2019.

5.

Multidrug-Resistant Infections Among Hospitalized Adults With Community-Acquired Pneumonia In An Indonesian Tertiary Referral Hospital.

Purba AK, Ascobat P, Muchtar A, Wulandari L, Rosyid AN, Purwono PB, van der Werf TS, Friedrich AW, Postma MJ.

Infect Drug Resist. 2019 Nov 25;12:3663-3675. doi: 10.2147/IDR.S217842. eCollection 2019.

6.

Incidence, clinical implications and impact on public health of infections with Shigella spp. and entero-invasive Escherichia coli (EIEC): results of a multicenter cross-sectional study in the Netherlands during 2016-2017.

van den Beld MJC, Warmelink E, Friedrich AW, Reubsaet FAG, Schipper M, de Boer RF, Notermans DW, Petrignani MWF, van Zanten E, Rossen JWA, Friesema IHM, Kooistra-Smid AMDM; IBESS working group.

BMC Infect Dis. 2019 Dec 9;19(1):1037. doi: 10.1186/s12879-019-4659-y.

7.

Development of a reference data set for assigning Streptococcus and Enterococcus species based on next generation sequencing of the 16S-23S rRNA region.

Kosecka-Strojek M, Sabat AJ, Akkerboom V, Kooistra-Smid AMDM, Miedzobrodzki J, Friedrich AW.

Antimicrob Resist Infect Control. 2019 Nov 15;8:178. doi: 10.1186/s13756-019-0622-3. eCollection 2019.

8.

Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages.

da Cruz Campos AC, Cavallo FM, L Andrade N, van Dijl JM, Couto N, Zrimec J, Lo Ten Foe JR, P Rosa AC, V Damasco P, Friedrich AW, Chlebowicz-Flissikowska MA, Rossen JWA.

Microorganisms. 2019 Nov 6;7(11). pii: E534. doi: 10.3390/microorganisms7110534.

9.

Reduced Fitness Costs of mcr-1.2 Compared to Mutated pmrB in Isogenic Colistin-Resistant KPC-3-Producing Klebsiella pneumoniae.

Giordano C, Klak A, Barnini S, Chlebowicz MA, Menconi M, Rossen JW, Friedrich AW, Bathoorn E.

mSphere. 2019 Nov 6;4(6). pii: e00551-19. doi: 10.1128/mSphere.00551-19.

10.

Detection of a novel mcr-5.4 gene variant in hospital tap water by shotgun metagenomic sequencing.

Fleres G, Couto N, Schuele L, Chlebowicz MA, Mendes CI, van der Sluis LWM, Rossen JWA, Friedrich AW, García-Cobos S.

J Antimicrob Chemother. 2019 Dec 1;74(12):3626-3628. doi: 10.1093/jac/dkz363. No abstract available.

11.

Abundance and Antimicrobial Resistance of Three Bacterial Species along a Complete Wastewater Pathway.

Verburg I, García-Cobos S, Hernández Leal L, Waar K, Friedrich AW, Schmitt H.

Microorganisms. 2019 Sep 3;7(9). pii: E312. doi: 10.3390/microorganisms7090312.

12.

Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region.

Kosecka-Strojek M, Sabat AJ, Akkerboom V, Becker K, van Zanten E, Wisselink G, Miedzobrodzki J, Kooistra-Smid AMDM, Friedrich AW.

Front Cell Infect Microbiol. 2019 Aug 7;9:278. doi: 10.3389/fcimb.2019.00278. eCollection 2019.

13.

Contact precautions in single-bed or multiple-bed rooms for patients with extended-spectrum β-lactamase-producing Enterobacteriaceae in Dutch hospitals: a cluster-randomised, crossover, non-inferiority study.

Kluytmans-van den Bergh MFQ, Bruijning-Verhagen PCJ, Vandenbroucke-Grauls CMJE, de Brauwer EIGB, Buiting AGM, Diederen BM, van Elzakker EPM, Friedrich AW, Hopman J, Al Naiemi N, Rossen JWA, Ruijs GJHM, Savelkoul PHM, Verhulst C, Vos MC, Voss A, Bonten MJM, Kluytmans JAJW; SoM Study Group.

Lancet Infect Dis. 2019 Oct;19(10):1069-1079. doi: 10.1016/S1473-3099(19)30262-2. Epub 2019 Aug 23.

PMID:
31451419
14.

A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification.

Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N.

Front Microbiol. 2019 Apr 16;10:620. doi: 10.3389/fmicb.2019.00620. eCollection 2019.

15.

Changing epidemiology of meticillin-resistant Staphylococcus aureus in 42 hospitals in the Dutch-German border region, 2012 to 2016: results of the search-and-follow-policy.

Jurke A, Daniels-Haardt I, Silvis W, Berends MS, Glasner C, Becker K, Köck R, Friedrich AW.

Euro Surveill. 2019 Apr;24(15). doi: 10.2807/1560-7917.ES.2019.24.15.1800244.

16.

Author Correction: Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2019 Apr 17;9(1):6406. doi: 10.1038/s41598-019-42134-9.

17.

Control of hospital acquired infections and antimicrobial resistance in Europe: the way to go.

Friedrich AW.

Wien Med Wochenschr. 2019 Feb;169(Suppl 1):25-30. doi: 10.1007/s10354-018-0676-5. Epub 2019 Jan 8.

18.

Cost analysis of outbreaks with Methicillin-resistant Staphylococcus aureus (MRSA) in Dutch long-term care facilities (LTCF).

van Rijt AM, Dik JH, Lokate M, Postma MJ, Friedrich AW.

PLoS One. 2018 Nov 26;13(11):e0208092. doi: 10.1371/journal.pone.0208092. eCollection 2018.

19.

Daptomycin Resistant Staphylococcus aureus Clinical Strain With Novel Non-synonymous Mutations in the mprF and vraS Genes: A New Insight Into Daptomycin Resistance.

Sabat AJ, Tinelli M, Grundmann H, Akkerboom V, Monaco M, Del Grosso M, Errico G, Pantosti A, Friedrich AW.

Front Microbiol. 2018 Nov 6;9:2705. doi: 10.3389/fmicb.2018.02705. eCollection 2018.

20.

Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment.

Colello R, Krüger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverría AI, Padola NL.

Microorganisms. 2018 Sep 28;6(4). pii: E99. doi: 10.3390/microorganisms6040099.

21.

Joint Genomic and Proteomic Analysis Identifies Meta-Trait Characteristics of Virulent and Non-virulent Staphylococcus aureus Strains.

Bonar EA, Bukowski M, Hydzik M, Jankowska U, Kedracka-Krok S, Groborz M, Dubin G, Akkerboom V, Miedzobrodzki J, Sabat AJ, Friedrich AW, Wladyka B.

Front Cell Infect Microbiol. 2018 Sep 6;8:313. doi: 10.3389/fcimb.2018.00313. eCollection 2018.

22.

Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements.

Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA.

J Antimicrob Chemother. 2018 Dec 1;73(12):3259-3267. doi: 10.1093/jac/dky349.

PMID:
30219855
23.

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w. Erratum in: Sci Rep. 2019 Apr 17;9(1):6406.

24.

Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands.

Huizinga P, Schrauwen E, García-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J.

PLoS One. 2018 Aug 30;13(8):e0203338. doi: 10.1371/journal.pone.0203338. eCollection 2018.

25.

ESCMID white paper: a guide on ESCMID guidance documents.

Scudeller L, Rodríguez-Baño J, Zinkernagel A, Tacconelli E, Akova M, Friedrich AW, Sanguinetti M, Paul M, Poljak M.

Clin Microbiol Infect. 2019 Feb;25(2):155-162. doi: 10.1016/j.cmi.2018.08.005. Epub 2018 Aug 24.

26.

European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus.

Deplano A, Dodémont M, Denis O, Westh H, Gumpert H, Larsen AR, Larsen J, Kearns A, Pichon B, Layer F, Schulte B, Wolz C, Spiliopoulou I, Brennan G, Empel J, Hryniewicz W, de Lencastre H, Faria NA, Codita I, Sabat AJ, Friedrich AW, Deurenberg RH, Tristan A, Laurent F, Vandenesch F.

J Antimicrob Chemother. 2018 Oct 1;73(10):2662-2666. doi: 10.1093/jac/dky260.

PMID:
30099486
27.

Prevention of Surgical Site Infections: A Systematic Review of Cost Analyses in the Use of Prophylactic Antibiotics.

Purba AKR, Setiawan D, Bathoorn E, Postma MJ, Dik JH, Friedrich AW.

Front Pharmacol. 2018 Jul 18;9:776. doi: 10.3389/fphar.2018.00776. eCollection 2018.

28.

Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing.

Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, García-Cobos S, Friedrich AW.

Microorganisms. 2018 Jul 18;6(3). pii: E71. doi: 10.3390/microorganisms6030071.

29.

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.

van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00510-18. doi: 10.1128/JCM.00510-18. Print 2018 Oct.

30.

Complete Coding Sequences of Five Dengue Virus Type 2 Clinical Isolates from Venezuela Obtained through Shotgun Metagenomics.

Lizarazo E, Couto N, Vincenti-Gonzalez M, Raangs EC, Jaenisch T, Friedrich AW, Tami A, Rossen JW.

Genome Announc. 2018 Jun 21;6(25). pii: e00545-18. doi: 10.1128/genomeA.00545-18.

31.

An overview of the data obtained during the validation of an optimized MALDI-TOF MS Biotyper database for the identification of anaerobic bacteria.

Veloo ACM, Jean-Pierre H, Justesen US, Morris T, Urban E, Wybo I, Kostrzewa M, Friedrich AW, On Behalf Of The Enria Workgroup.

Data Brief. 2018 Apr 23;18:1484-1496. doi: 10.1016/j.dib.2018.04.070. eCollection 2018 Jun.

32.

Carbapenem-resistant Enterobacteriaceae in wildlife, food-producing, and companion animals: a systematic review.

Köck R, Daniels-Haardt I, Becker K, Mellmann A, Friedrich AW, Mevius D, Schwarz S, Jurke A.

Clin Microbiol Infect. 2018 Dec;24(12):1241-1250. doi: 10.1016/j.cmi.2018.04.004. Epub 2018 Apr 11.

33.

Complete Genome Sequences of Two Methicillin-Resistant Staphylococcus haemolyticus Isolates of Multilocus Sequence Type 25, First Detected by Shotgun Metagenomics.

Couto N, Chlebowicz MA, Raangs EC, Friedrich AW, Rossen JW.

Genome Announc. 2018 Apr 5;6(14). pii: e00036-18. doi: 10.1128/genomeA.00036-18.

34.

ESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlab.

Motro Y, Carriço JA, Friedrich AW, Rossen JWA, Moran-Gilad J.

Microbes Infect. 2018 May;20(5):275-280. doi: 10.1016/j.micinf.2018.02.006. Epub 2018 Mar 17. No abstract available.

PMID:
29555344
35.

Validation of MALDI-TOF MS Biotyper database optimized for anaerobic bacteria: The ENRIA project.

Veloo ACM, Jean-Pierre H, Justesen US, Morris T, Urban E, Wybo I, Kostrzewa M, Friedrich AW; ENRIA workgroup.

Anaerobe. 2018 Dec;54:224-230. doi: 10.1016/j.anaerobe.2018.03.007. Epub 2018 Mar 12.

36.

Comprehensive Molecular Characterization of Escherichia coli Isolates from Urine Samples of Hospitalized Patients in Rio de Janeiro, Brazil.

Campos ACC, Andrade NL, Ferdous M, Chlebowicz MA, Santos CC, Correal JCD, Lo Ten Foe JR, Rosa ACP, Damasco PV, Friedrich AW, Rossen JWA.

Front Microbiol. 2018 Feb 16;9:243. doi: 10.3389/fmicb.2018.00243. eCollection 2018.

37.

ArgO145, a Stx2a prophage of a bovine O145:H- STEC strain, is closely related to phages of virulent human strains.

Krüger A, Burgán J, Friedrich AW, Rossen JWA, Lucchesi PMA.

Infect Genet Evol. 2018 Jun;60:126-132. doi: 10.1016/j.meegid.2018.02.024. Epub 2018 Feb 21.

PMID:
29476813
38.

Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients.

Gigliucci F, von Meijenfeldt FAB, Knijn A, Michelacci V, Scavia G, Minelli F, Dutilh BE, Ahmad HM, Raangs GC, Friedrich AW, Rossen JWA, Morabito S.

Front Cell Infect Microbiol. 2018 Feb 6;8:25. doi: 10.3389/fcimb.2018.00025. eCollection 2018.

39.

Defining Multidrug Resistance of Gram-Negative Bacteria in the Dutch-German Border Region-Impact of National Guidelines.

Köck R, Siemer P, Esser J, Kampmeier S, Berends MS, Glasner C, Arends JP, Becker K, Friedrich AW.

Microorganisms. 2018 Jan 26;6(1). pii: E11. doi: 10.3390/microorganisms6010011.

40.

Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis.

Peker N, Rossen JWA, Deurenberg RH, Langereis PC, Raangs EGC, Kluytmans JA, Friedrich AW, Veenemans J, Sinha B.

Microorganisms. 2018 Jan 11;6(1). pii: E6. doi: 10.3390/microorganisms6010006.

41.

Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis.

Tacconelli E, Carrara E, Savoldi A, Harbarth S, Mendelson M, Monnet DL, Pulcini C, Kahlmeter G, Kluytmans J, Carmeli Y, Ouellette M, Outterson K, Patel J, Cavaleri M, Cox EM, Houchens CR, Grayson ML, Hansen P, Singh N, Theuretzbacher U, Magrini N; WHO Pathogens Priority List Working Group.

Lancet Infect Dis. 2018 Mar;18(3):318-327. doi: 10.1016/S1473-3099(17)30753-3. Epub 2017 Dec 21.

PMID:
29276051
42.

Identification of a KPC-9-producing Klebsiella pneumoniae ST258 cluster among KPC-2-producing isolates of an ongoing outbreak in Northwestern Greece: a retrospective study.

Gartzonika K, Rossen JWA, Sakkas H, Rosema S, Priavali E, Friedrich AW, Levidiotou S, Bathoorn E.

Clin Microbiol Infect. 2018 May;24(5):558-560. doi: 10.1016/j.cmi.2017.12.007. Epub 2017 Dec 21. No abstract available.

43.

Diagnostic Evasion of Highly-Resistant Microorganisms: A Critical Factor in Nosocomial Outbreaks.

Zhou X, Friedrich AW, Bathoorn E.

Front Microbiol. 2017 Nov 3;8:2128. doi: 10.3389/fmicb.2017.02128. eCollection 2017.

44.

Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology.

Rossen JWA, Friedrich AW, Moran-Gilad J; ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD).

Clin Microbiol Infect. 2018 Apr;24(4):355-360. doi: 10.1016/j.cmi.2017.11.001. Epub 2017 Nov 5. Review.

45.

PVL overexpression due to genomic rearrangements and mutations in the S. aureus reference strain ATCC25923.

Stieber B, Sabat A, Monecke S, Slickers P, Akkerboom V, Müller E, Friedrich AW, Ehricht R.

BMC Res Notes. 2017 Nov 7;10(1):576. doi: 10.1186/s13104-017-2891-3.

46.

Expansion of KPC-producing Klebsiella pneumoniae with various mgrB mutations giving rise to colistin resistance: the role of ISL3 on plasmids.

Giordano C, Barnini S, Tsioutis C, Chlebowicz MA, Scoulica EV, Gikas A, Rossen JW, Friedrich AW, Bathoorn E.

Int J Antimicrob Agents. 2018 Feb;51(2):260-265. doi: 10.1016/j.ijantimicag.2017.10.011. Epub 2017 Oct 27.

47.

Integrated Stewardship Model Comprising Antimicrobial, Infection Prevention, and Diagnostic Stewardship (AID Stewardship).

Dik JH, Poelman R, Friedrich AW, Niesters HGM, Rossen JWA, Sinha B.

J Clin Microbiol. 2017 Nov;55(11):3306-3307. doi: 10.1128/JCM.01283-17. No abstract available.

48.

Extensive colonization with carbapenemase-producing microorganisms in Romanian burn patients: infectious consequences from the Colectiv fire disaster.

Pirii LE, Friedrich AW, Rossen JWA, Vogels W, Beerthuizen GIJM, Nieuwenhuis MK, Kooistra-Smid AMD, Bathoorn E.

Eur J Clin Microbiol Infect Dis. 2018 Jan;37(1):175-183. doi: 10.1007/s10096-017-3118-1. Epub 2017 Oct 23.

49.

Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.

Amissah NA, Buultjens AH, Ablordey A, van Dam L, Opoku-Ware A, Baines SL, Bulach D, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, Seemann T, van Dijl JM, Stienstra Y, Stinear TP, Rossen JW.

Front Microbiol. 2017 Oct 6;8:1906. doi: 10.3389/fmicb.2017.01906. eCollection 2017.

50.

Epidemiology of Extended-Spectrum β-Lactamase-Producing E. coli and Vancomycin-Resistant Enterococci in the Northern Dutch-German Cross-Border Region.

Zhou X, García-Cobos S, Ruijs GJHM, Kampinga GA, Arends JP, Borst DM, Möller LV, Holman ND, Schuurs TA, Bruijnesteijn van Coppenraet LE, Weel JF, van Zeijl JH, Köck R, Rossen JWA, Friedrich AW.

Front Microbiol. 2017 Oct 5;8:1914. doi: 10.3389/fmicb.2017.01914. eCollection 2017.

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