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Items: 25

1.

Colonization by B. infantis EVC001 modulates enteric inflammation in exclusively breastfed infants.

Henrick BM, Chew S, Casaburi G, Brown HK, Frese SA, Zhou Y, Underwood MA, Smilowitz JT.

Pediatr Res. 2019 Aug 23. doi: 10.1038/s41390-019-0533-2. [Epub ahead of print]

PMID:
31443102
2.

Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria.

Casaburi G, Duar RM, Vance DP, Mitchell R, Contreras L, Frese SA, Smilowitz JT, Underwood MA.

Antimicrob Resist Infect Control. 2019 Aug 14;8:131. doi: 10.1186/s13756-019-0583-6. eCollection 2019.

3.

GenCoF: a graphical user interface to rapidly remove human genome contaminants from metagenomic datasets.

Czajkowski MD, Vance DP, Frese SA, Casaburi G.

Bioinformatics. 2019 Jul 1;35(13):2318-2319. doi: 10.1093/bioinformatics/bty963.

4.

Reduced colonic mucin degradation in breastfed infants colonized by Bifidobacterium longum subsp. infantis EVC001.

Karav S, Casaburi G, Frese SA.

FEBS Open Bio. 2018 Sep 17;8(10):1649-1657. doi: 10.1002/2211-5463.12516. eCollection 2018 Oct.

5.

Thoroughbred mare's milk exhibits a unique and diverse free oligosaccharide profile.

Karav S, Salcedo J, Frese SA, Barile D.

FEBS Open Bio. 2018 Jul 16;8(8):1219-1229. doi: 10.1002/2211-5463.12460. eCollection 2018 Aug.

6.

Elevated Fecal pH Indicates a Profound Change in the Breastfed Infant Gut Microbiome Due to Reduction of Bifidobacterium over the Past Century.

Henrick BM, Hutton AA, Palumbo MC, Casaburi G, Mitchell RD, Underwood MA, Smilowitz JT, Frese SA.

mSphere. 2018 Mar 7;3(2). pii: e00041-18. doi: 10.1128/mSphere.00041-18. eCollection 2018 Mar-Apr.

7.

Persistence of Supplemented Bifidobacterium longum subsp. infantis EVC001 in Breastfed Infants.

Frese SA, Hutton AA, Contreras LN, Shaw CA, Palumbo MC, Casaburi G, Xu G, Davis JCC, Lebrilla CB, Henrick BM, Freeman SL, Barile D, German JB, Mills DA, Smilowitz JT, Underwood MA.

mSphere. 2017 Dec 6;2(6). pii: e00501-17. doi: 10.1128/mSphere.00501-17. eCollection 2017 Nov-Dec.

8.

Experimental Evaluation of Host Adaptation of Lactobacillus reuteri to Different Vertebrate Species.

Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE, Tasseva G, Peterson DA, Blom J, Wenzel CQ, Szymanski CM, Walter J.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00132-17. doi: 10.1128/AEM.00132-17. Print 2017 Jun 15.

9.

Characterization of porcine milk oligosaccharides during early lactation and their relation to the fecal microbiome.

Salcedo J, Frese SA, Mills DA, Barile D.

J Dairy Sci. 2016 Oct;99(10):7733-7743. doi: 10.3168/jds.2016-10966. Epub 2016 Aug 10.

10.

Oligosaccharides Released from Milk Glycoproteins Are Selective Growth Substrates for Infant-Associated Bifidobacteria.

Karav S, Le Parc A, Leite Nobrega de Moura Bell JM, Frese SA, Kirmiz N, Block DE, Barile D, Mills DA.

Appl Environ Microbiol. 2016 May 31;82(12):3622-3630. doi: 10.1128/AEM.00547-16. Print 2016 Jun 15.

11.

Personalizing protein nourishment.

Dallas DC, Sanctuary MR, Qu Y, Khajavi SH, Van Zandt AE, Dyandra M, Frese SA, Barile D, German JB.

Crit Rev Food Sci Nutr. 2017 Oct 13;57(15):3313-3331. doi: 10.1080/10408398.2015.1117412. Review.

12.

Peptidomic analysis reveals proteolytic activity of kefir microorganisms on bovine milk proteins.

Dallas DC, Citerne F, Tian T, Silva VL, Kalanetra KM, Frese SA, Robinson RC, Mills DA, Barile D.

Food Chem. 2016 Apr 15;197(Pt A):273-84. doi: 10.1016/j.foodchem.2015.10.116. Epub 2015 Oct 26.

13.

Validating bifidobacterial species and subspecies identity in commercial probiotic products.

Lewis ZT, Shani G, Masarweh CF, Popovic M, Frese SA, Sela DA, Underwood MA, Mills DA.

Pediatr Res. 2016 Mar;79(3):445-52. doi: 10.1038/pr.2015.244. Epub 2015 Nov 16.

14.

Characterization of the ecological role of genes mediating acid resistance in Lactobacillus reuteri during colonization of the gastrointestinal tract.

Krumbeck JA, Marsteller NL, Frese SA, Peterson DA, Ramer-Tait AE, Hutkins RW, Walter J.

Environ Microbiol. 2016 Jul;18(7):2172-84. doi: 10.1111/1462-2920.13108. Epub 2015 Dec 21.

15.

Diet shapes the gut microbiome of pigs during nursing and weaning.

Frese SA, Parker K, Calvert CC, Mills DA.

Microbiome. 2015 Jul 1;3:28. doi: 10.1186/s40168-015-0091-8. eCollection 2015.

16.

A novel endo-β-N-acetylglucosaminidase releases specific N-glycans depending on different reaction conditions.

Parc AL, Karav S, De Moura Bell JMLN, Frese SA, Liu Y, Mills DA, Block DE, Barile D.

Biotechnol Prog. 2015 Sep-Oct;31(5):1323-1330. doi: 10.1002/btpr.2133. Epub 2015 Jul 4.

17.

Should infants cry over spilled milk? Fecal glycomics as an indicator of a healthy infant gut microbiome.

Frese SA, Mills DA.

J Pediatr Gastroenterol Nutr. 2015 Jun;60(6):695. doi: 10.1097/MPG.0000000000000798. No abstract available.

18.

Birth of the infant gut microbiome: moms deliver twice!

Frese SA, Mills DA.

Cell Host Microbe. 2015 May 13;17(5):543-4. doi: 10.1016/j.chom.2015.04.014.

19.

Cultivating healthy growth and nutrition through the gut microbiota.

Subramanian S, Blanton LV, Frese SA, Charbonneau M, Mills DA, Gordon JI.

Cell. 2015 Mar 26;161(1):36-48. doi: 10.1016/j.cell.2015.03.013.

20.

In vivo selection to identify bacterial strains with enhanced ecological performance in synbiotic applications.

Krumbeck JA, Maldonado-Gomez MX, Martínez I, Frese SA, Burkey TE, Rasineni K, Ramer-Tait AE, Harris EN, Hutkins RW, Walter J.

Appl Environ Microbiol. 2015 Apr;81(7):2455-65. doi: 10.1128/AEM.03903-14. Epub 2015 Jan 23.

21.

Phenolic metabolites and substantial microbiome changes in pig feces by ingesting grape seed proanthocyanidins.

Choy YY, Quifer-Rada P, Holstege DM, Frese SA, Calvert CC, Mills DA, Lamuela-Raventos RM, Waterhouse AL.

Food Funct. 2014 Sep;5(9):2298-308. doi: 10.1039/c4fo00325j.

22.

Evaluating local vegetation cover as a risk factor for malaria transmission: a new analytical approach using ImageJ.

Ricotta EE, Frese SA, Choobwe C, Louis TA, Shiff CJ.

Malar J. 2014 Mar 13;13:94. doi: 10.1186/1475-2875-13-94.

23.

Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont.

Frese SA, Mackenzie DA, Peterson DA, Schmaltz R, Fangman T, Zhou Y, Zhang C, Benson AK, Cody LA, Mulholland F, Juge N, Walter J.

PLoS Genet. 2013;9(12):e1004057. doi: 10.1371/journal.pgen.1004057. Epub 2013 Dec 26.

24.

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.

Frese SA, Benson AK, Tannock GW, Loach DM, Kim J, Zhang M, Oh PL, Heng NC, Patil PB, Juge N, Mackenzie DA, Pearson BM, Lapidus A, Dalin E, Tice H, Goltsman E, Land M, Hauser L, Ivanova N, Kyrpides NC, Walter J.

PLoS Genet. 2011 Feb;7(2):e1001314. doi: 10.1371/journal.pgen.1001314. Epub 2011 Feb 17.

25.

Structure and functions of exopolysaccharide produced by gut commensal Lactobacillus reuteri 100-23.

Sims IM, Frese SA, Walter J, Loach D, Wilson M, Appleyard K, Eason J, Livingston M, Baird M, Cook G, Tannock GW.

ISME J. 2011 Jul;5(7):1115-24. doi: 10.1038/ismej.2010.201. Epub 2011 Jan 20.

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