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Items: 21

1.

The RNA-Protein Interactome of Differentiated Kidney Tubular Epithelial Cells.

Ignarski M, Rill C, Kaiser RWJ, Kaldirim M, Neuhaus R, Esmaillie R, Li X, Klein C, Bohl K, Petersen M, Frese CK, Höhne M, Atanassov I, Rinschen MM, Höpker K, Schermer B, Benzing T, Dieterich C, Fabretti F, Müller RU.

J Am Soc Nephrol. 2019 Mar 13. pii: ASN.2018090914. doi: 10.1681/ASN.2018090914. [Epub ahead of print]

PMID:
30867249
2.

Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring.

Cagnetta R, Wong HH, Frese CK, Mallucci GR, Krijgsveld J, Holt CE.

Mol Cell. 2019 Feb 7;73(3):474-489.e5. doi: 10.1016/j.molcel.2018.11.013. Epub 2018 Dec 27.

3.

Mechanism suppressing H3K9 trimethylation in pluripotent stem cells and its demise by polyQ-expanded huntingtin mutations.

Irmak D, Fatima A, Gutiérrez-Garcia R, Rinschen MM, Wagle P, Altmüller J, Arrigoni L, Hummel B, Klein C, Frese CK, Sawarkar R, Rada-Iglesias A, Vilchez D.

Hum Mol Genet. 2018 Dec 1;27(23):4117-4134. doi: 10.1093/hmg/ddy304.

PMID:
30452683
4.

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome.

Cagnetta R, Frese CK, Shigeoka T, Krijgsveld J, Holt CE.

Neuron. 2018 Jul 11;99(1):29-46.e4. doi: 10.1016/j.neuron.2018.06.004. Epub 2018 Jun 28.

5.

Single-nephron proteomes connect morphology and function in proteinuric kidney disease.

Höhne M, Frese CK, Grahammer F, Dafinger C, Ciarimboli G, Butt L, Binz J, Hackl MJ, Rahmatollahi M, Kann M, Schneider S, Altintas MM, Schermer B, Reinheckel T, Göbel H, Reiser J, Huber TB, Kramann R, Seeger-Nukpezah T, Liebau MC, Beck BB, Benzing T, Beyer A, Rinschen MM.

Kidney Int. 2018 Jun;93(6):1308-1319. doi: 10.1016/j.kint.2017.12.012. Epub 2018 Mar 9.

PMID:
29530281
6.

Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap.

Castello A, Frese CK, Fischer B, Järvelin AI, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW.

Nat Protoc. 2017 Dec;12(12):2447-2464. doi: 10.1038/nprot.2017.106. Epub 2017 Nov 2.

PMID:
29095441
7.

Quantitative Map of Proteome Dynamics during Neuronal Differentiation.

Frese CK, Mikhaylova M, Stucchi R, Gautier V, Liu Q, Mohammed S, Heck AJR, Altelaar AFM, Hoogenraad CC.

Cell Rep. 2017 Feb 7;18(6):1527-1542. doi: 10.1016/j.celrep.2017.01.025.

8.

Comprehensive Identification of RNA-Binding Domains in Human Cells.

Castello A, Fischer B, Frese CK, Horos R, Alleaume AM, Foehr S, Curk T, Krijgsveld J, Hentze MW.

Mol Cell. 2016 Aug 18;63(4):696-710. doi: 10.1016/j.molcel.2016.06.029. Epub 2016 Jul 21.

9.

The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.

Liao Y, Castello A, Fischer B, Leicht S, Föehr S, Frese CK, Ragan C, Kurscheid S, Pagler E, Yang H, Krijgsveld J, Hentze MW, Preiss T.

Cell Rep. 2016 Aug 2;16(5):1456-1469. doi: 10.1016/j.celrep.2016.06.084. Epub 2016 Jul 21.

10.

Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila.

Sysoev VO, Fischer B, Frese CK, Gupta I, Krijgsveld J, Hentze MW, Castello A, Ephrussi A.

Nat Commun. 2016 Jul 5;7:12128. doi: 10.1038/ncomms12128.

11.

Diet-induced neuropeptide expression: feasibility of quantifying extended and highly charged endogenous peptide sequences by selected reaction monitoring.

Schmidlin T, Boender AJ, Frese CK, Heck AJ, Adan RA, Altelaar AF.

Anal Chem. 2015 Oct 6;87(19):9966-73. doi: 10.1021/acs.analchem.5b03334.

PMID:
26376940
12.

De novo discovery of phenotypic intratumour heterogeneity using imaging mass spectrometry.

Balluff B, Frese CK, Maier SK, Schöne C, Kuster B, Schmitt M, Aubele M, Höfler H, Deelder AM, Heck A Jr, Hogendoorn PC, Morreau J, Maarten Altelaar AF, Walch A, McDonnell LA.

J Pathol. 2015 Jan;235(1):3-13. doi: 10.1002/path.4436. Epub 2014 Nov 3.

PMID:
25201776
13.

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).

Mommen GP, Frese CK, Meiring HD, van Gaans-van den Brink J, de Jong AP, van Els CA, Heck AJ.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4507-12. doi: 10.1073/pnas.1321458111. Epub 2014 Mar 10.

14.

Characterization of electron transfer dissociation in the Orbitrap Velos HCD cell.

Frese CK, Nolting D, Altelaar AF, Griep-Raming J, Mohammed S, Heck AJ.

J Am Soc Mass Spectrom. 2013 Nov;24(11):1663-70. doi: 10.1007/s13361-013-0618-9. Epub 2013 Apr 20.

PMID:
23605687
15.

Profiling of diet-induced neuropeptide changes in rat brain by quantitative mass spectrometry.

Frese CK, Boender AJ, Mohammed S, Heck AJ, Adan RA, Altelaar AF.

Anal Chem. 2013 May 7;85(9):4594-604. doi: 10.1021/ac400232y. Epub 2013 Apr 26.

PMID:
23581470
16.

Imaging mass spectrometry-based molecular histology differentiates microscopically identical and heterogeneous tumors.

Jones EA, Schmitz N, Waaijer CJ, Frese CK, van Remoortere A, van Zeijl RJ, Heck AJ, Hogendoorn PC, Deelder AM, Altelaar AF, Bovée JV, McDonnell LA.

J Proteome Res. 2013 Apr 5;12(4):1847-55. doi: 10.1021/pr301190g. Epub 2013 Mar 25.

PMID:
23480610
17.

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD).

Frese CK, Zhou H, Taus T, Altelaar AF, Mechtler K, Heck AJ, Mohammed S.

J Proteome Res. 2013 Mar 1;12(3):1520-5. doi: 10.1021/pr301130k. Epub 2013 Feb 7.

18.

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

Frese CK, Altelaar AF, van den Toorn H, Nolting D, Griep-Raming J, Heck AJ, Mohammed S.

Anal Chem. 2012 Nov 20;84(22):9668-73. doi: 10.1021/ac3025366. Epub 2012 Oct 31.

PMID:
23106539
19.

Benchmarking stable isotope labeling based quantitative proteomics.

Altelaar AF, Frese CK, Preisinger C, Hennrich ML, Schram AW, Timmers HT, Heck AJ, Mohammed S.

J Proteomics. 2013 Aug 2;88:14-26. doi: 10.1016/j.jprot.2012.10.009. Epub 2012 Oct 22.

PMID:
23085607
20.

The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells.

Munoz J, Low TY, Kok YJ, Chin A, Frese CK, Ding V, Choo A, Heck AJ.

Mol Syst Biol. 2011 Nov 22;7:550. doi: 10.1038/msb.2011.84.

21.

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

Frese CK, Altelaar AF, Hennrich ML, Nolting D, Zeller M, Griep-Raming J, Heck AJ, Mohammed S.

J Proteome Res. 2011 May 6;10(5):2377-88. doi: 10.1021/pr1011729. Epub 2011 Apr 1.

PMID:
21413819

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