Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 45

1.

Total protein or leucine intakes are not associated with handgrip strength in hemodialysis patients: A pilot study.

Marini ACB, Motobu RD, Freitas ATV, Laviano A, Pichard C, Pimentel GD.

Clin Nutr ESPEN. 2019 Oct;33:290-293. doi: 10.1016/j.clnesp.2019.05.017. Epub 2019 Jun 27.

PMID:
31451270
2.

Arsenic exposure during prepuberty alters prostate maturation in pubescent rats.

Aquino AM, Salata GC, Pinho CF, de Freitas ATAG, Périco LL, de Lion Siervo GEM, Mendes LO, Da Cunha De Medeiros P, Justulin LA, Fernandes GSA, Perobelli JE, Scarano WR.

Reprod Toxicol. 2019 Jul 13;89:136-144. doi: 10.1016/j.reprotox.2019.07.010. [Epub ahead of print]

PMID:
31310804
3.

Intradialytic Resistance Training Improves Functional Capacity and Lean Mass Gain in Individuals on Hemodialysis: A Randomized Pilot Trial.

Lopes LCC, Mota JF, Prestes J, Schincaglia RM, Silva DM, Queiroz NP, Freitas ATVS, Lira FS, Peixoto MDRG.

Arch Phys Med Rehabil. 2019 Jul 3. pii: S0003-9993(19)30450-2. doi: 10.1016/j.apmr.2019.06.006. [Epub ahead of print]

PMID:
31278924
4.

NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language.

Coelho LP, Alves R, Monteiro P, Huerta-Cepas J, Freitas AT, Bork P.

Microbiome. 2019 Jun 3;7(1):84. doi: 10.1186/s40168-019-0684-8.

5.

Raloxifene decreases cell viability and migratory potential in prostate cancer cells (LNCaP) with GPR30/GPER1 involvement.

Salata GC, Pinho CF, de Freitas ATAG, Aquino AM, Justulin LA, Mendes LO, Gonçalves BF, Delella FK, Scarano WR.

J Pharm Pharmacol. 2019 Jul;71(7):1065-1071. doi: 10.1111/jphp.13089. Epub 2019 Mar 28.

PMID:
30919959
6.

Tolerability and Effects of the Use of Energy-Enriched Infant Formula After Congenital Heart Surgery: A Randomized Controlled Trial.

Scheeffer VA, Ricachinevsky CP, Freitas AT, Salamon F, Rodrigues FFN, Brondani TG, Sutil AT, Ferreira CHT, Matte UDS, da Silveira TR.

JPEN J Parenter Enteral Nutr. 2019 Mar 22. doi: 10.1002/jpen.1530. [Epub ahead of print]

PMID:
30900268
7.

Serum advanced glycation end products are not associated with muscle strength in hemodialysis patients.

Silva DM, Queiroz NP, Freitas ATVS, Passarelli M, Corgosinho FC, Peixoto MDRG.

Eur J Clin Nutr. 2019 Apr;73(4):617-623. doi: 10.1038/s41430-018-0379-4. Epub 2019 Jan 3.

PMID:
30607008
8.

Pre-sarcopenia in patients undergoing hemodialysis: Prevalence and association with biochemical parameters.

Marini AC, Motobu RD, Freitas ATV, Laviano A, Pimentel GD.

Clin Nutr ESPEN. 2018 Dec;28:236-238. doi: 10.1016/j.clnesp.2018.07.014. Epub 2018 Aug 20.

PMID:
30390888
9.

Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients.

Monteiro M, Fonseca AC, Freitas AT, Pinho E Melo T, Francisco AP, Ferro JM, Oliveira AL.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):1953-1959. doi: 10.1109/TCBB.2018.2811471. Epub 2018 Mar 1.

PMID:
29994736
10.

Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation.

Guerra AB, Oliveira JS, Silva-Portela RCB, Araújo W, Carlos AC, Vasconcelos ATR, Freitas AT, Domingos YS, de Farias MF, Fernandes GJT, Agnez-Lima LF.

Environ Pollut. 2018 Apr;235:869-880. doi: 10.1016/j.envpol.2018.01.014. Epub 2018 Feb 21.

PMID:
29353803
11.

Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation.

Oliveira JS, Araújo WJ, Figueiredo RM, Silva-Portela RCB, de Brito Guerra A, da Silva Araújo SC, Minnicelli C, Carlos AC, de Vasconcelos ATR, Freitas AT, Agnez-Lima LF.

BMC Microbiol. 2017 Jul 27;17(1):168. doi: 10.1186/s12866-017-1077-4.

12.

Regulatory and junctional proteins of the blood-testis barrier in human Sertoli cells are modified by monobutyl phthalate (MBP) and bisphenol A (BPA) exposure.

de Freitas ATAG, Ribeiro MA, Pinho CF, Peixoto AR, Domeniconi RF, Scarano WR.

Toxicol In Vitro. 2016 Aug;34:1-7. doi: 10.1016/j.tiv.2016.02.017. Epub 2016 Feb 26.

PMID:
26922907
13.

Is energy intake underreported in hemodialysis patients?

Vaz IM, Freitas AT, Peixoto Mdo R, Ferraz SF, Campos MI.

J Bras Nefrol. 2015 Jul-Sep;37(3):359-66. doi: 10.5935/0101-2800.20150056. English, Portuguese.

14.

Nutritional status and interdialytic weight gain of chronic hemodialysis patients.

Ferraz SF, Freitas AT, Vaz IM, Campos MI, Peixoto Mdo R, Pereira ER.

J Bras Nefrol. 2015 Jul-Sep;37(3):306-14. doi: 10.5935/0101-2800.20150050. English, Portuguese.

15.

BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies.

Oliveira JS, Araújo W, Lopes Sales AI, Brito Guerra Ad, Silva Araújo SC, de Vasconcelos AT, Agnez-Lima LF, Freitas AT.

Database (Oxford). 2015 Mar 31;2015. pii: bav033. doi: 10.1093/database/bav033. Print 2015.

16.

Significant Differences Characterise the Correlation Coefficients between Biocide and Antibiotic Susceptibility Profiles in Staphylococcus aureus.

Oggioni MR, Coelho JR, Furi L, Knight DR, Viti C, Orefici G, Martinez JL, Freitas AT, Coque TM, Morrissey I; BIOHYPO consortium.

Curr Pharm Des. 2015;21(16):2054-7.

17.

Nutritional assessment and hand grip strength of candidates for surgery of the gastrointestinal tract.

Silveira TM, Sousa JB, Stringhini ML, Freitas AT, Melo PG.

Arq Bras Cir Dig. 2014 Apr-Jun;27(2):104-8. English, Portuguese.

18.

Prevalence and associated factors with abdominal obesity in hemodialysis patients in Goiânia--GO.

Freitas AT, Vaz IM, Ferraz SF, Peixoto Mdo R, Campos MI, Fornés NS.

J Bras Nefrol. 2013 Oct-Dec;35(4):265-72. doi: 10.5935/0101-2800.20130045. English, Portuguese.

19.

slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array.

Fernandes F, Freitas AT.

Bioinformatics. 2014 Feb 15;30(4):464-71. doi: 10.1093/bioinformatics/btt706. Epub 2013 Dec 11.

PMID:
24336412
20.

The semantic web in translational medicine: current applications and future directions.

Machado CM, Rebholz-Schuhmann D, Freitas AT, Couto FM.

Brief Bioinform. 2015 Jan;16(1):89-103. doi: 10.1093/bib/bbt079. Epub 2013 Nov 6. Review.

21.

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae.

Teixeira MC, Monteiro PT, Guerreiro JF, Gonçalves JP, Mira NP, dos Santos SC, Cabrito TR, Palma M, Costa C, Francisco AP, Madeira SC, Oliveira AL, Freitas AT, Sá-Correia I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D161-6. doi: 10.1093/nar/gkt1015. Epub 2013 Oct 28.

22.

Enrichment analysis applied to disease prognosis.

Machado CM, Freitas AT, Couto FM.

J Biomed Semantics. 2013 Oct 8;4(1):21. doi: 10.1186/2041-1480-4-21.

23.

Evaluation of reduced susceptibility to quaternary ammonium compounds and bisbiguanides in clinical isolates and laboratory-generated mutants of Staphylococcus aureus.

Furi L, Ciusa ML, Knight D, Di Lorenzo V, Tocci N, Cirasola D, Aragones L, Coelho JR, Freitas AT, Marchi E, Moce L, Visa P, Northwood JB, Viti C, Borghi E, Orefici G; BIOHYPO Consortium, Morrissey I, Oggioni MR.

Antimicrob Agents Chemother. 2013 Aug;57(8):3488-97. doi: 10.1128/AAC.00498-13. Epub 2013 May 13.

24.

The use of machine learning methodologies to analyse antibiotic and biocide susceptibility in Staphylococcus aureus.

Coelho JR, Carriço JA, Knight D, Martínez JL, Morrissey I, Oggioni MR, Freitas AT.

PLoS One. 2013;8(2):e55582. doi: 10.1371/journal.pone.0055582. Epub 2013 Feb 19.

25.

Empirical assessment of sequencing errors for high throughput pyrosequencing data.

da Fonseca PG, Paiva JA, Almeida LG, Vasconcelos AT, Freitas AT.

BMC Res Notes. 2013 Jan 22;6:25. doi: 10.1186/1756-0500-6-25.

26.

Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.

Mendes ND, Heyne S, Freitas AT, Sagot MF, Backofen R.

Bioinformatics. 2012 Dec 1;28(23):3034-41. doi: 10.1093/bioinformatics/bts574. Epub 2012 Oct 10.

27.

A novel resistance mechanism to triclosan that suggests horizontal gene transfer and demonstrates a potential selective pressure for reduced biocide susceptibility in clinical strains of Staphylococcus aureus.

Ciusa ML, Furi L, Knight D, Decorosi F, Fondi M, Raggi C, Coelho JR, Aragones L, Moce L, Visa P, Freitas AT, Baldassarri L, Fani R, Viti C, Orefici G, Martinez JL, Morrissey I, Oggioni MR; BIOHYPO Consortium.

Int J Antimicrob Agents. 2012 Sep;40(3):210-20. Epub 2012 Jul 11.

28.

Qualitative modelling and formal verification of the FLR1 gene mancozeb response in Saccharomyces cerevisiae.

Monteiro PT, Dias PJ, Ropers D, Oliveira AL, Sá-Correia I, Teixeira MC, Freitas AT.

IET Syst Biol. 2011 Sep;5(5):308-16. doi: 10.1049/iet-syb.2011.0001.

PMID:
22010757
29.

Quantitative modeling of the Saccharomyces cerevisiae FLR1 regulatory network using an S-system formalism.

Calçada D, Vinga S, Freitas AT, Oliveira AL.

J Bioinform Comput Biol. 2011 Oct;9(5):613-30.

PMID:
21976379
30.

Efficient alignment of pyrosequencing reads for re-sequencing applications.

Fernandes F, da Fonseca PG, Russo LM, Oliveira AL, Freitas AT.

BMC Bioinformatics. 2011 May 16;12:163. doi: 10.1186/1471-2105-12-163.

31.

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.

Paiva JA, Prat E, Vautrin S, Santos MD, San-Clemente H, Brommonschenkel S, Fonseca PG, Grattapaglia D, Song X, Ammiraju JS, Kudrna D, Wing RA, Freitas AT, Bergès H, Grima-Pettenati J.

BMC Genomics. 2011 Mar 4;12:137. doi: 10.1186/1471-2164-12-137.

32.

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface.

Abdulrehman D, Monteiro PT, Teixeira MC, Mira NP, Lourenço AB, dos Santos SC, Cabrito TR, Francisco AP, Madeira SC, Aires RS, Oliveira AL, Sá-Correia I, Freitas AT.

Nucleic Acids Res. 2011 Jan;39(Database issue):D136-40. doi: 10.1093/nar/gkq964. Epub 2010 Oct 23.

33.

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches.

Teixeira MC, Dias PJ, Monteiro PT, Sala A, Oliveira AL, Freitas AT, Sá-Correia I.

Mol Biosyst. 2010 Dec;6(12):2471-81. doi: 10.1039/c004881j. Epub 2010 Oct 11.

PMID:
20938527
34.

Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi.

Mendes ND, Freitas AT, Vasconcelos AT, Sagot MF.

BMC Genomics. 2010 Sep 29;11:529. doi: 10.1186/1471-2164-11-529.

35.

A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.

Monteiro PT, Dumas E, Besson B, Mateescu R, Page M, Freitas AT, de Jong H.

BMC Bioinformatics. 2009 Dec 30;10:450. doi: 10.1186/1471-2105-10-450.

36.

CSA: an efficient algorithm to improve circular DNA multiple alignment.

Fernandes F, Pereira L, Freitas AT.

BMC Bioinformatics. 2009 Jul 23;10:230. doi: 10.1186/1471-2105-10-230.

37.

Entropic Profiler - detection of conservation in genomes using information theory.

Fernandes F, Freitas AT, Almeida JS, Vinga S.

BMC Res Notes. 2009 May 5;2:72. doi: 10.1186/1756-0500-2-72.

38.

Current tools for the identification of miRNA genes and their targets.

Mendes ND, Freitas AT, Sagot MF.

Nucleic Acids Res. 2009 May;37(8):2419-33. doi: 10.1093/nar/gkp145. Epub 2009 Mar 18. Review.

39.

Temporal logic patterns for querying dynamic models of cellular interaction networks.

Monteiro PT, Ropers D, Mateescu R, Freitas AT, de Jong H.

Bioinformatics. 2008 Aug 15;24(16):i227-33. doi: 10.1093/bioinformatics/btn275.

PMID:
18689830
40.

An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.

Casimiro AC, Vinga S, Freitas AT, Oliveira AL.

BMC Bioinformatics. 2008 Feb 7;9:89. doi: 10.1186/1471-2105-9-89.

41.

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.

Monteiro PT, Mendes ND, Teixeira MC, d'Orey S, Tenreiro S, Mira NP, Pais H, Francisco AP, Carvalho AM, Lourenço AB, Sá-Correia I, Oliveira AL, Freitas AT.

Nucleic Acids Res. 2008 Jan;36(Database issue):D132-6. Epub 2007 Nov 21.

42.

MUSA: a parameter free algorithm for the identification of biologically significant motifs.

Mendes ND, Casimiro AC, Santos PM, Sá-Correia I, Oliveira AL, Freitas AT.

Bioinformatics. 2006 Dec 15;22(24):2996-3002. Epub 2006 Oct 26.

PMID:
17068086
43.

An efficient algorithm for the identification of structured motifs in DNA promoter sequences.

Carvalho AM, Freitas AT, Oliveira AL, Sagot MF.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Apr-Jun;3(2):126-40.

PMID:
17048399
44.

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae.

Teixeira MC, Monteiro P, Jain P, Tenreiro S, Fernandes AR, Mira NP, Alenquer M, Freitas AT, Oliveira AL, Sá-Correia I.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D446-51.

45.

Progressive preoperative pneumoperitoneum in the repair of large abdominal hernias.

Coelho JC, Brenner AS, Freitas AT, Campos AC, Wiederkehr JC.

Eur J Surg. 1993 Jun-Jul;159(6-7):339-41.

PMID:
8104494

Supplemental Content

Loading ...
Support Center