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Murine Genetic Background has a Stronger Impact on the Composition of the Gut Microbiota than Maternal Inoculation or Exposure to Unlike Exogenous Microbiota.

Korach-Rechtman H, Freilich S, Gerassy-Vainberg S, Buhnik-Rosenblau K, Danin-Poleg Y, Bar H, Kashi Y.

Appl Environ Microbiol. 2019 Jul 26. pii: AEM.00826-19. doi: 10.1128/AEM.00826-19. [Epub ahead of print]


Genome Analysis of Haplotype D of Candidatus Liberibacter Solanacearum.

Katsir L, Zhepu R, Santos Garcia D, Piasezky A, Jiang J, Sela N, Freilich S, Bahar O.

Front Microbiol. 2018 Dec 10;9:2933. doi: 10.3389/fmicb.2018.02933. eCollection 2018.


To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies.

Santos-Garcia D, Juravel K, Freilich S, Zchori-Fein E, Latorre A, Moya A, Morin S, Silva FJ.

Front Microbiol. 2018 Sep 25;9:2254. doi: 10.3389/fmicb.2018.02254. eCollection 2018.


Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions.

Xu X, Zarecki R, Medina S, Ofaim S, Liu X, Chen C, Hu S, Brom D, Gat D, Porob S, Eizenberg H, Ronen Z, Jiang J, Freilich S.

ISME J. 2019 Feb;13(2):494-508. doi: 10.1038/s41396-018-0288-5. Epub 2018 Oct 5.


Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment.

Opatovsky I, Santos-Garcia D, Ruan Z, Lahav T, Ofaim S, Mouton L, Barbe V, Jiang J, Zchori-Fein E, Freilich S.

BMC Genomics. 2018 May 25;19(1):402. doi: 10.1186/s12864-018-4786-7.


Genome Sequence of "Candidatus Carsonella ruddii" Strain BT from the Psyllid Bactericera trigonica.

Katsir L, Zhepu R, Piasezky A, Jiang J, Sela N, Freilich S, Bahar O.

Genome Announc. 2018 Jan 25;6(4). pii: e01466-17. doi: 10.1128/genomeA.01466-17.


Dyella-Like Bacterium Isolated from an Insect as a Potential Biocontrol Agent Against Grapevine Yellows.

Iasur-Kruh L, Zahavi T, Barkai R, Freilich S, Zchori-Fein E, Naor V.

Phytopathology. 2018 Mar;108(3):336-341. doi: 10.1094/PHYTO-06-17-0199-R. Epub 2018 Feb 2.


Analysis of Microbial Functions in the Rhizosphere Using a Metabolic-Network Based Framework for Metagenomics Interpretation.

Ofaim S, Ofek-Lalzar M, Sela N, Jinag J, Kashi Y, Minz D, Freilich S.

Front Microbiol. 2017 Aug 23;8:1606. doi: 10.3389/fmicb.2017.01606. eCollection 2017.


Transcriptomic Analysis of Soil Grown T. aestivum cv. Root to Reveal the Changes in Expression of Genes in Response to Multiple Nutrients Deficiency.

Gupta S, Yadav BS, Raj U, Freilich S, Varadwaj PK.

Front Plant Sci. 2017 Jun 22;8:1025. doi: 10.3389/fpls.2017.01025. eCollection 2017.


Host-Parasite-Bacteria Triangle: The Microbiome of the Parasitic Weed Phelipanche aegyptiaca and Tomato-Solanum lycopersicum (Mill.) as a Host.

Iasur Kruh L, Lahav T, Abu-Nassar J, Achdari G, Salami R, Freilich S, Aly R.

Front Plant Sci. 2017 Mar 1;8:269. doi: 10.3389/fpls.2017.00269. eCollection 2017.


Haoranjiania flava gen. nov., sp. nov., a new member of the family Chitinophagaceae, isolated from activated sludge.

Zhang L, Chen XL, Hu Q, Chen K, Yan X, Li SP, Freilich S, Jiang JD.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4686-4691. doi: 10.1099/ijsem.0.001411.


Prospects for Biological Soilborne Disease Control: Application of Indigenous Versus Synthetic Microbiomes.

Mazzola M, Freilich S.

Phytopathology. 2017 Mar;107(3):256-263. doi: 10.1094/PHYTO-09-16-0330-RVW. Epub 2017 Jan 27. Review.


The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii.

Itkin M, Davidovich-Rikanati R, Cohen S, Portnoy V, Doron-Faigenboim A, Oren E, Freilich S, Tzuri G, Baranes N, Shen S, Petreikov M, Sertchook R, Ben-Dor S, Gottlieb H, Hernandez A, Nelson DR, Paris HS, Tadmor Y, Burger Y, Lewinsohn E, Katzir N, Schaffer A.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):E7619-E7628. Epub 2016 Nov 7. Erratum in: Proc Natl Acad Sci U S A. 2018 Apr 2;:.


Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.


Multidimensional patterns of metabolic response in abiotic stress-induced growth of Arabidopsis thaliana.

Yadav BS, Lahav T, Reuveni E, Chamovitz DA, Freilich S.

Plant Mol Biol. 2016 Dec;92(6):689-699. Epub 2016 Sep 15.


Draft Genome Sequence of a Dyella-Like Bacterium from the Planthopper Hyalesthes obsoletus.

Lahav T, Zchori-Fein E, Naor V, Freilich S, Iasur-Kruh L.

Genome Announc. 2016 Jul 21;4(4). pii: e00686-16. doi: 10.1128/genomeA.00686-16.


Comparison of Four Comamonas Catabolic Plasmids Reveals the Evolution of pBHB To Catabolize Haloaromatics.

Chen K, Xu X, Zhang L, Gou Z, Li S, Freilich S, Jiang J.

Appl Environ Microbiol. 2015 Dec 18;82(5):1401-1411. doi: 10.1128/AEM.02930-15.


The Interplay between Scientific Overlap and Cooperation and the Resulting Gain in Co-Authorship Interactions.

Mayrose I, Freilich S.

PLoS One. 2015 Sep 15;10(9):e0137856. doi: 10.1371/journal.pone.0137856. eCollection 2015.


NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.

Levy R, Carr R, Kreimer A, Freilich S, Borenstein E.

BMC Bioinformatics. 2015 May 17;16:164. doi: 10.1186/s12859-015-0588-y.


Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits.

Freilich S, Lev S, Gonda I, Reuveni E, Portnoy V, Oren E, Lohse M, Galpaz N, Bar E, Tzuri G, Wissotsky G, Meir A, Burger J, Tadmor Y, Schaffer A, Fei Z, Giovannoni J, Lewinsohn E, Katzir N.

BMC Plant Biol. 2015 Mar 3;15:71. doi: 10.1186/s12870-015-0449-x.


Variations in the identity and complexity of endosymbiont combinations in whitefly hosts.

Zchori-Fein E, Lahav T, Freilich S.

Front Microbiol. 2014 Jul 4;5:310. doi: 10.3389/fmicb.2014.00310. eCollection 2014.


Maximal sum of metabolic exchange fluxes outperforms biomass yield as a predictor of growth rate of microorganisms.

Zarecki R, Oberhardt MA, Yizhak K, Wagner A, Shtifman Segal E, Freilich S, Henry CS, Gophna U, Ruppin E.

PLoS One. 2014 May 27;9(5):e98372. doi: 10.1371/journal.pone.0098372. eCollection 2014.


Hepatic encephalopathy with epilepsia partialis continua: a case report.

Parker T, Freilich S, Tidswell T, Angus-Leppan H.

Seizure. 2012 Dec;21(10):813-5. doi: 10.1016/j.seizure.2012.08.010. Epub 2012 Sep 20. No abstract available.


NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.

Kreimer A, Doron-Faigenboim A, Borenstein E, Freilich S.

Bioinformatics. 2012 Aug 15;28(16):2195-7. doi: 10.1093/bioinformatics/bts323. Epub 2012 Jun 4. Erratum in: Bioinformatics. 2012 Oct 1;28(19):2560.


Peptide markers of aminoacyl tRNA synthetases facilitate taxa counting in metagenomic data.

Persi E, Weingart U, Freilich S, Horn D.

BMC Genomics. 2012 Feb 10;13:65. doi: 10.1186/1471-2164-13-65.


Competitive and cooperative metabolic interactions in bacterial communities.

Freilich S, Zarecki R, Eilam O, Segal ES, Henry CS, Kupiec M, Gophna U, Sharan R, Ruppin E.

Nat Commun. 2011 Dec 13;2:589. doi: 10.1038/ncomms1597.


Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.

Ainali C, Simon M, Freilich S, Espinosa O, Hazelwood L, Tsoka S, Ouzounis CA, Hancock JM.

BMC Evol Biol. 2011 May 25;11:142. doi: 10.1186/1471-2148-11-142.


lines and bowl affect the specification of cyst stem cells and niche cells in the Drosophila testis.

Dinardo S, Okegbe T, Wingert L, Freilich S, Terry N.

Development. 2011 May;138(9):1687-96. doi: 10.1242/dev.057364.


Association between translation efficiency and horizontal gene transfer within microbial communities.

Tuller T, Girshovich Y, Sella Y, Kreimer A, Freilich S, Kupiec M, Gophna U, Ruppin E.

Nucleic Acids Res. 2011 Jun;39(11):4743-55. doi: 10.1093/nar/gkr054. Epub 2011 Feb 22.


Emphysema due to smoke from a herbal asthma remedy.

Freilich S, Usmani OS, Polkey MI, Hopkinson NS.

JRSM Short Rep. 2010 Jun 30;1(1):8. doi: 10.1258/shorts.2009.090050. No abstract available.


An unusual case of diaphragm paralysis.

Freilich S, Janssen JC, Polkey MI.

Thorax. 2011 Feb;66(2):133, 168-9. doi: 10.1136/thx.2010.145144. No abstract available.


Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species.

Freilich S, Kreimer A, Borenstein E, Gophna U, Sharan R, Ruppin E.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000690. doi: 10.1371/journal.pcbi.1000690.


The large-scale organization of the bacterial network of ecological co-occurrence interactions.

Freilich S, Kreimer A, Meilijson I, Gophna U, Sharan R, Ruppin E.

Nucleic Acids Res. 2010 Jul;38(12):3857-68. doi: 10.1093/nar/gkq118. Epub 2010 Mar 1.


Sleep architecture and attenuated heart rate response to arousal from sleep in patients with autonomic failure.

Freilich S, Goff EA, Malaweera AS, Twigg GL, Simonds AK, Mathias CJ, Morrell MJ.

Sleep Med. 2010 Jan;11(1):87-92. doi: 10.1016/j.sleep.2008.12.017. Epub 2009 Dec 4.


Stratification of co-evolving genomic groups using ranked phylogenetic profiles.

Freilich S, Goldovsky L, Gottlieb A, Blanc E, Tsoka S, Ouzounis CA.

BMC Bioinformatics. 2009 Oct 27;10:355. doi: 10.1186/1471-2105-10-355.


Metabolic-network-driven analysis of bacterial ecological strategies.

Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E.

Genome Biol. 2009;10(6):R61. doi: 10.1186/gb-2009-10-6-r61. Epub 2009 Jun 5.


The Pipeline program at Boston University Goldman School of Dental Medicine.

Crall JJ, Hewlett ER, Friedman JA, Mascarenhas AK, Freilich S, Henshaw M, Jones JA, Mann M, Frankl S.

J Dent Educ. 2009 Feb;73(2 Suppl):S58-68; discussion S68-9. No abstract available.


Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom.

Huminiecki L, Goldovsky L, Freilich S, Moustakas A, Ouzounis C, Heldin CH.

BMC Evol Biol. 2009 Feb 3;9:28. doi: 10.1186/1471-2148-9-28.


Metabolic innovations towards the human lineage.

Freilich S, Goldovsky L, Ouzounis CA, Thornton JM.

BMC Evol Biol. 2008 Sep 9;8:247. doi: 10.1186/1471-2148-8-247.


Society for Pediatric Sedation reply to Dr Cote's editorial.

Baxter AL, Bernard PA, Berkenbosch JW, Blike G, Cohen DM, Connors JM, Cravero JP, Fagin DH, Freilich S, Havidich J, Hertzog JH, Hollman G, King L, Kost S, Leder M, Linzer J Sr, Litman RS, Lowrie L, Lubisch NB, Mallory M, Scherrer PD, Stockwell JA, Werner DA.

Paediatr Anaesth. 2008 Jun;18(6):559-60; author reply 560-1. doi: 10.1111/j.1460-9592.2008.02600.x. No abstract available.


Etomidate versus pentobarbital for computed tomography sedations: report from the Pediatric Sedation Research Consortium.

Baxter AL, Mallory MD, Spandorfer PR, Sharma S, Freilich SH, Cravero J; Pediatric Sedation Research Consortium.

Pediatr Emerg Care. 2007 Oct;23(10):690-5.


Denoising inferred functional association networks obtained by gene fusion analysis.

Kamburov A, Goldovsky L, Freilich S, Kapazoglou A, Kunin V, Enright AJ, Tsaftaris A, Ouzounis CA.

BMC Genomics. 2007 Dec 14;8:460.


Construction, visualisation, and clustering of transcription networks from microarray expression data.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.


Transanal endoscopic microsurgery for rectal tumors: the St. Mary's experience.

Zacharakis E, Freilich S, Rekhraj S, Athanasiou T, Paraskeva P, Ziprin P, Darzi A.

Am J Surg. 2007 Nov;194(5):694-8.


Evaluating externship programs: impact of program length on clinical productivity.

Mascarenhas AK, Freilich SR, Henshaw MM, Jones JA, Mann ML, Frankl SN.

J Dent Educ. 2007 Apr;71(4):516-23.


Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins.

Freilich S, Massingham T, Blanc E, Goldovsky L, Thornton JM.

Genome Biol. 2006;7(10):R89. Epub 2006 Oct 9.


Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins.

Freilich S, Massingham T, Bhattacharyya S, Ponsting H, Lyons PA, Freeman TC, Thornton JM.

Genome Biol. 2005;6(7):R56. Epub 2005 Jun 29.


The complement of enzymatic sets in different species.

Freilich S, Spriggs RV, George RA, Al-Lazikani B, Swindells M, Thornton JM.

J Mol Biol. 2005 Jun 17;349(4):745-63.


New broadly-endorsed advisory statement on anti-microbial prophylaxis surgery.

Ordin D, Schaberg F Jr, Freilich S, McBride P.

Med Health R I. 2004 Sep;87(9):284-5. No abstract available.


New-onset ichthyosis and diabetes in a 14-year-old.

Scheinfeld N, Libkind M, Freilich S.

Pediatr Dermatol. 2001 Nov-Dec;18(6):501-3.


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