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Items: 1 to 50 of 254

1.

Fiber pattern removal and image reconstruction method for snapshot mosaic hyperspectral endoscopic images.

Wang P, Turcatel G, Arnesano C, Warburton D, Fraser SE, Cutrale F.

Biomed Opt Express. 2018 Jan 25;9(2):780-790. doi: 10.1364/BOE.9.000780. eCollection 2018 Feb 1.

2.

Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos.

Trivedi V, Choi HMT, Fraser SE, Pierce NA.

Development. 2018 Jan 8;145(1). pii: dev156869. doi: 10.1242/dev.156869.

3.

Eph-ephrin signaling modulated by polymerization and condensation of receptors.

Ojosnegros S, Cutrale F, Rodríguez D, Otterstrom JJ, Chiu CL, Hortigüela V, Tarantino C, Seriola A, Mieruszynski S, Martínez E, Lakadamyali M, Raya A, Fraser SE.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):13188-13193. doi: 10.1073/pnas.1713564114. Epub 2017 Nov 30.

4.

Multi-shaping technique reduces sidelobe magnitude in optical coherence tomography.

Chen Y, Fingler J, Fraser SE.

Biomed Opt Express. 2017 Oct 26;8(11):5267-5281. doi: 10.1364/BOE.8.005267. eCollection 2017 Nov 1.

5.

Genetic and neuronal regulation of sleep by neuropeptide VF.

Lee DA, Andreev A, Truong TV, Chen A, Hill AJ, Oikonomou G, Pham U, Hong YK, Tran S, Glass L, Sapin V, Engle J, Fraser SE, Prober DA.

Elife. 2017 Nov 6;6. pii: e25727. doi: 10.7554/eLife.25727.

6.

SERCA directs cell migration and branching across species and germ layers.

Bower DV, Lansdale N, Navarro S, Truong TV, Bower DJ, Featherstone NC, Connell MG, Al Alam D, Frey MR, Trinh LA, Fernandez GE, Warburton D, Fraser SE, Bennett D, Jesudason EC.

Biol Open. 2017 Oct 15;6(10):1458-1471. doi: 10.1242/bio.026039.

7.

Structural and Functional Characterization of Human Stem-Cell-Derived Retinal Organoids by Live Imaging.

Browne AW, Arnesano C, Harutyunyan N, Khuu T, Martinez JC, Pollack HA, Koos DS, Lee TC, Fraser SE, Moats RA, Aparicio JG, Cobrinik D.

Invest Ophthalmol Vis Sci. 2017 Jul 1;58(9):3311-3318. doi: 10.1167/iovs.16-20796. Review.

8.

3D in vivo imaging with extended-focus optical coherence microscopy.

Chen Y, Trinh LA, Fingler J, Fraser SE.

J Biophotonics. 2017 Nov;10(11):1411-1420. doi: 10.1002/jbio.201700008. Epub 2017 Apr 18.

PMID:
28417564
9.

Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome.

Trinh LA, Chong-Morrison V, Gavriouchkina D, Hochgreb-Hägele T, Senanayake U, Fraser SE, Sauka-Spengler T.

Cell Rep. 2017 Apr 11;19(2):425-440. doi: 10.1016/j.celrep.2017.03.045.

10.

Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging.

Cutrale F, Trivedi V, Trinh LA, Chiu CL, Choi JM, Artiga MS, Fraser SE.

Nat Methods. 2017 Feb;14(2):149-152. doi: 10.1038/nmeth.4134. Epub 2017 Jan 9.

PMID:
28068315
11.

Phase variance optical coherence microscopy for label-free imaging of the developing vasculature in zebrafish embryos.

Chen Y, Trinh LA, Fingler J, Fraser SE.

J Biomed Opt. 2016 Dec 1;21(12):126022. doi: 10.1117/1.JBO.21.12.126022.

PMID:
28036094
12.

Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection.

Cronan MR, Beerman RW, Rosenberg AF, Saelens JW, Johnson MG, Oehlers SH, Sisk DM, Jurcic Smith KL, Medvitz NA, Miller SE, Trinh LA, Fraser SE, Madden JF, Turner J, Stout JE, Lee S, Tobin DM.

Immunity. 2016 Oct 18;45(4):861-876. doi: 10.1016/j.immuni.2016.09.014.

13.

Mapping a multiplexed zoo of mRNA expression.

Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA.

Development. 2016 Oct 1;143(19):3632-3637.

14.

Conditional Creation and Rescue of Nipbl-Deficiency in Mice Reveals Multiple Determinants of Risk for Congenital Heart Defects.

Santos R, Kawauchi S, Jacobs RE, Lopez-Burks ME, Choi H, Wikenheiser J, Hallgrimsson B, Jamniczky HA, Fraser SE, Lander AD, Calof AL.

PLoS Biol. 2016 Sep 8;14(9):e2000197. doi: 10.1371/journal.pbio.2000197. eCollection 2016 Sep.

15.

An E3-ligase-based method for ablating inhibitory synapses.

Gross GG, Straub C, Perez-Sanchez J, Dempsey WP, Junge JA, Roberts RW, Trinh le A, Fraser SE, De Koninck Y, De Koninck P, Sabatini BL, Arnold DB.

Nat Methods. 2016 Aug;13(8):673-8. doi: 10.1038/nmeth.3894. Epub 2016 Jun 6.

16.

Intracellular kinetics of the androgen receptor shown by multimodal Image Correlation Spectroscopy (mICS).

Chiu CL, Patsch K, Cutrale F, Soundararajan A, Agus DB, Fraser SE, Ruderman D.

Sci Rep. 2016 Mar 3;6:22435. doi: 10.1038/srep22435.

17.

Imaging of the cross-presenting dendritic cell subsets in the skin-draining lymph node.

Kitano M, Yamazaki C, Takumi A, Ikeno T, Hemmi H, Takahashi N, Shimizu K, Fraser SE, Hoshino K, Kaisho T, Okada T.

Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):1044-9. doi: 10.1073/pnas.1513607113. Epub 2016 Jan 11.

18.

Characterization of Antibody Bipolar Bridging Mediated by the Human Cytomegalovirus Fc Receptor gp68.

Ndjamen B, Joshi DS, Fraser SE, Bjorkman PJ.

J Virol. 2016 Jan 6;90(6):3262-7. doi: 10.1128/JVI.02855-15.

19.

Tools for the Microbiome: Nano and Beyond.

Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD.

ACS Nano. 2016 Jan 26;10(1):6-37. doi: 10.1021/acsnano.5b07826. Epub 2015 Dec 22. Review.

PMID:
26695070
20.

Imaging the Cell and Molecular Dynamics of Craniofacial Development: Challenges and New Opportunities in Imaging Developmental Tissue Patterning.

Trinh le A, Fraser SE.

Curr Top Dev Biol. 2015;115:599-629. doi: 10.1016/bs.ctdb.2015.09.002. Epub 2015 Oct 19. Review.

PMID:
26589939
21.

Nanobody-targeted E3-ubiquitin ligase complex degrades nuclear proteins.

Shin YJ, Park SK, Jung YJ, Kim YN, Kim KS, Park OK, Kwon SH, Jeon SH, Trinh le A, Fraser SE, Kee Y, Hwang BJ.

Sci Rep. 2015 Sep 16;5:14269. doi: 10.1038/srep14269.

22.

A transgenic quail model that enables dynamic imaging of amniote embryogenesis.

Huss D, Benazeraf B, Wallingford A, Filla M, Yang J, Fraser SE, Lansford R.

Development. 2015 Aug 15;142(16):2850-9. doi: 10.1242/dev.121392. Epub 2015 Jul 24.

23.

Detection of pigment epithelial detachment vascularization in age-related macular degeneration using phase-variance OCT angiography.

McClintic SM, Kim DY, Fingler J, Garcia S, Zawadzki RJ, Morse LS, Park SS, Fraser SE, Werner JS, Ruggiero JP, Schwartz DM.

Clin Ophthalmol. 2015 Jul 15;9:1299-305. doi: 10.2147/OPTH.S83701. eCollection 2015.

24.

Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy and retrospective registration.

Trivedi V, Truong TV, Trinh le A, Holland DB, Liebling M, Fraser SE.

Biomed Opt Express. 2015 May 11;6(6):2056-66. doi: 10.1364/BOE.6.002056. eCollection 2015 Jun 1.

25.

Spatio-Temporal Differences in Dystrophin Dynamics at mRNA and Protein Levels Revealed by a Novel FlipTrap Line.

Ruf-Zamojski F, Trivedi V, Fraser SE, Trinh le A.

PLoS One. 2015 Jun 17;10(6):e0128944. doi: 10.1371/journal.pone.0128944. eCollection 2015.

26.

Dynamic imaging of the growth plate cartilage reveals multiple contributors to skeletal morphogenesis.

Li Y, Trivedi V, Truong TV, Koos DS, Lansford R, Chuong CM, Warburton D, Moats RA, Fraser SE.

Nat Commun. 2015 Apr 13;6:6798. doi: 10.1038/ncomms7798.

27.

Combinatorial analysis of mRNA expression patterns in mouse embryos using hybridization chain reaction.

Huss D, Choi HM, Readhead C, Fraser SE, Pierce NA, Lansford R.

Cold Spring Harb Protoc. 2015 Mar 2;2015(3):259-68. doi: 10.1101/pdb.prot083832.

PMID:
25734068
28.

Airway branching has conserved needs for local parasympathetic innervation but not neurotransmission.

Bower DV, Lee HK, Lansford R, Zinn K, Warburton D, Fraser SE, Jesudason EC.

BMC Biol. 2014 Nov 11;12:92. doi: 10.1186/s12915-014-0092-2.

29.

Abundance of gap junctions at glutamatergic mixed synapses in adult Mosquitofish spinal cord neurons.

Serrano-Velez JL, Rodriguez-Alvarado M, Torres-Vazquez II, Fraser SE, Yasumura T, Vanderpool KG, Rash JE, Rosa-Molinar E.

Front Neural Circuits. 2014 Jun 26;8:66. doi: 10.3389/fncir.2014.00066. eCollection 2014.

30.

The herpes virus Fc receptor gE-gI mediates antibody bipolar bridging to clear viral antigens from the cell surface.

Ndjamen B, Farley AH, Lee T, Fraser SE, Bjorkman PJ.

PLoS Pathog. 2014 Mar 6;10(3):e1003961. doi: 10.1371/journal.ppat.1003961. eCollection 2014 Mar.

31.

Efficient generation of transgenic mice by lentivirus-mediated modification of spermatozoa.

Chandrashekran A, Sarkar R, Thrasher A, Fraser SE, Dibb N, Casimir C, Winston R, Readhead C.

FASEB J. 2014 Feb;28(2):569-76. doi: 10.1096/fj.13-233999. Epub 2013 Dec 2.

PMID:
24297703
32.
33.

Phase-variance optical coherence tomography: a technique for noninvasive angiography.

Schwartz DM, Fingler J, Kim DY, Zawadzki RJ, Morse LS, Park SS, Fraser SE, Werner JS.

Ophthalmology. 2014 Jan;121(1):180-187. doi: 10.1016/j.ophtha.2013.09.002. Epub 2013 Oct 21.

34.

A detailed description of an economical setup for electroporation of chick embryos in ovo.

Borges RM, Horne JH, Melo A, Vidal JT, Vieceli FM, Melo MO, Kanno TY, Fraser SE, Yan CY.

Braz J Med Biol Res. 2013 Sep;46(9):752-7. doi: 10.1590/1414-431X20133232. Epub 2013 Sep 18.

35.

Optical imaging of the chorioretinal vasculature in the living human eye.

Kim DY, Fingler J, Zawadzki RJ, Park SS, Morse LS, Schwartz DM, Fraser SE, Werner JS.

Proc Natl Acad Sci U S A. 2013 Aug 27;110(35):14354-9. doi: 10.1073/pnas.1307315110. Epub 2013 Aug 5.

36.

Enhancer and gene traps for molecular imaging and genetic analysis in zebrafish.

Trinh le A, Fraser SE.

Dev Growth Differ. 2013 May;55(4):434-45. doi: 10.1111/dgd.12055. Epub 2013 Apr 8. Review.

PMID:
23565993
37.

Organic geochemical analysis of archaeological medicine pots from Northern Ghana. The multi-functionality of pottery.

Fraser SE, Insoll T, Thompson A, van Dongen BE.

J Archaeol Sci. 2012 Jul;39(7):2506-2514.

38.

Nanotools for neuroscience and brain activity mapping.

Alivisatos AP, Andrews AM, Boyden ES, Chun M, Church GM, Deisseroth K, Donoghue JP, Fraser SE, Lippincott-Schwartz J, Looger LL, Masmanidis S, McEuen PL, Nurmikko AV, Park H, Peterka DS, Reid C, Roukes ML, Scherer A, Schnitzer M, Sejnowski TJ, Shepard KL, Tsao D, Turrigiano G, Weiss PS, Xu C, Yuste R, Zhuang X.

ACS Nano. 2013 Mar 26;7(3):1850-66. doi: 10.1021/nn4012847. Epub 2013 Mar 20. Review.

39.

Surface functionalization of barium titanate SHG nanoprobes for in vivo imaging in zebrafish.

Čulić-Viskota J, Dempsey WP, Fraser SE, Pantazis P.

Nat Protoc. 2012 Sep;7(9):1618-33. doi: 10.1038/nprot.2012.087. Epub 2012 Aug 9.

PMID:
22899331
40.

New transgenic reporters identify somatosensory neuron subtypes in larval zebrafish.

Palanca AM, Lee SL, Yee LE, Joe-Wong C, Trinh le A, Hiroyasu E, Husain M, Fraser SE, Pellegrini M, Sagasti A.

Dev Neurobiol. 2013 Feb;73(2):152-67. doi: 10.1002/dneu.22049. Epub 2012 Sep 27.

41.

Transgenic quail as a model for research in the avian nervous system: a comparative study of the auditory brainstem.

Seidl AH, Sanchez JT, Schecterson L, Tabor KM, Wang Y, Kashima DT, Poynter G, Huss D, Fraser SE, Lansford R, Rubel EW.

J Comp Neurol. 2013 Jan 1;521(1):5-23. doi: 10.1002/cne.23187.

42.

Electrophysiological characterization of Grueneberg ganglion olfactory neurons: spontaneous firing, sodium conductance, and hyperpolarization-activated currents.

Liu CY, Xiao C, Fraser SE, Lester HA, Koos DS.

J Neurophysiol. 2012 Sep;108(5):1318-34. doi: 10.1152/jn.00907.2011. Epub 2012 May 30.

43.

Differential phase-contrast, swept-source optical coherence tomography at 1060 nm for in vivo human retinal and choroidal vasculature visualization.

Motaghiannezam SM, Koos D, Fraser SE.

J Biomed Opt. 2012 Feb;17(2):026011. doi: 10.1117/1.JBO.17.2.026011.

PMID:
22463043
44.

PhOTO zebrafish: a transgenic resource for in vivo lineage tracing during development and regeneration.

Dempsey WP, Fraser SE, Pantazis P.

PLoS One. 2012;7(3):e32888. doi: 10.1371/journal.pone.0032888. Epub 2012 Mar 14.

45.

In vivo human choroidal vascular pattern visualization using high-speed swept-source optical coherence tomography at 1060 nm.

Motaghiannezam R, Schwartz DM, Fraser SE.

Invest Ophthalmol Vis Sci. 2012 Apr 30;53(4):2337-48. doi: 10.1167/iovs.11-7823.

PMID:
22410568
46.

SHG nanoprobes: advancing harmonic imaging in biology.

Dempsey WP, Fraser SE, Pantazis P.

Bioessays. 2012 May;34(5):351-60. doi: 10.1002/bies.201100106. Epub 2012 Mar 6. Review.

PMID:
22392481
47.

Noninvasive imaging of the foveal avascular zone with high-speed, phase-variance optical coherence tomography.

Kim DY, Fingler J, Zawadzki RJ, Park SS, Morse LS, Schwartz DM, Fraser SE, Werner JS.

Invest Ophthalmol Vis Sci. 2012 Jan 5;53(1):85-92. doi: 10.1167/iovs.11-8249.

48.

A versatile gene trap to visualize and interrogate the function of the vertebrate proteome.

Trinh le A, Hochgreb T, Graham M, Wu D, Ruf-Zamojski F, Jayasena CS, Saxena A, Hawk R, Gonzalez-Serricchio A, Dixson A, Chow E, Gonzales C, Leung HY, Solomon I, Bronner-Fraser M, Megason SG, Fraser SE.

Genes Dev. 2011 Nov 1;25(21):2306-20. doi: 10.1101/gad.174037.111.

49.

The composition and origin of Ghana medicine clays.

van Dongen BE, Fraser SE, Insoll T.

Anthropol Med. 2011 Aug;18(2):285-302. doi: 10.1080/13648470.2011.591204.

50.

Deep and fast live imaging with two-photon scanned light-sheet microscopy.

Truong TV, Supatto W, Koos DS, Choi JM, Fraser SE.

Nat Methods. 2011 Jul 17;8(9):757-60. doi: 10.1038/nmeth.1652.

PMID:
21765409

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