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Town-scale microbial sewer community and H2S emissions response to common chemical and biological dosing treatments.

Mathews ER, Wood JL, Phillips D, Billington N, Barnett D, Franks AE.

J Environ Sci (China). 2020 Jan;87:133-148. doi: 10.1016/j.jes.2019.06.011. Epub 2019 Jun 25.


Dynamic processes in conjunction with microbial response to disclose the biochar effect on pentachlorophenol degradation under both aerobic and anaerobic conditions.

Xu Y, Liu J, Cai W, Feng J, Lu Z, Wang H, Franks AE, Tang C, He Y, Xu J.

J Hazard Mater. 2019 Oct 23:121503. doi: 10.1016/j.jhazmat.2019.121503. [Epub ahead of print]


Towards Identifying Genetic Biomarkers for Gastrointestinal Dysfunction in Autism.

Shindler AE, Hill-Yardin EL, Petrovski S, Bishop N, Franks AE.

J Autism Dev Disord. 2019 Sep 18. doi: 10.1007/s10803-019-04231-6. [Epub ahead of print]


Bacteriophages in Natural and Artificial Environments.

Batinovic S, Wassef F, Knowler SA, Rice DTF, Stanton CR, Rose J, Tucci J, Nittami T, Vinh A, Drummond GR, Sobey CG, Chan HT, Seviour RJ, Petrovski S, Franks AE.

Pathogens. 2019 Jul 12;8(3). pii: E100. doi: 10.3390/pathogens8030100. Review.


Composition of soil organic matter drives total loss of dieldrin and dichlorodiphenyltrichloroethane in high-value pastures over thirty years.

Krohn C, Jin J, Ryan J, Fabijański P, Franks AE, Tang C.

Sci Total Environ. 2019 Nov 15;691:135-145. doi: 10.1016/j.scitotenv.2019.06.497. Epub 2019 Jun 29.


Microbial communities in top- and subsoil of repacked soil columns respond differently to amendments but their diversity is negatively correlated with plant productivity.

Celestina C, Wood JL, Manson JB, Wang X, Sale PWG, Tang C, Franks AE.

Sci Rep. 2019 Jun 20;9(1):8890. doi: 10.1038/s41598-019-45368-9.


TCF-1 limits the formation of Tc17 cells via repression of the MAF-RORγt axis.

Mielke LA, Liao Y, Clemens EB, Firth MA, Duckworth B, Huang Q, Almeida FF, Chopin M, Koay HF, Bell CA, Hediyeh-Zadeh S, Park SL, Raghu D, Choi J, Putoczki TL, Hodgkin PD, Franks AE, Mackay LK, Godfrey DI, Davis MJ, Xue HH, Bryant VL, Kedzierska K, Shi W, Belz GT.

J Exp Med. 2019 Jul 1;216(7):1682-1699. doi: 10.1084/jem.20181778. Epub 2019 May 29.


Gastrointestinal dysfunction in patients and mice expressing the autism-associated R451C mutation in neuroligin-3.

Hosie S, Ellis M, Swaminathan M, Ramalhosa F, Seger GO, Balasuriya GK, Gillberg C, Råstam M, Churilov L, McKeown SJ, Yalcinkaya N, Urvil P, Savidge T, Bell CA, Bodin O, Wood J, Franks AE, Bornstein JC, Hill-Yardin EL.

Autism Res. 2019 Jul;12(7):1043-1056. doi: 10.1002/aur.2127. Epub 2019 May 22.


Correction to: Enhanced Growth of Pilin-Deficient Geobacter sulfurreducens Mutants in Carbon Poor and Electron Donor Limiting Conditions.

Semenec L, Vergara IA, Laloo AE, Mathews ER, Bond PL, Franks AE.

Microb Ecol. 2019 Nov;78(4):1040-1041. doi: 10.1007/s00248-019-01370-2.


Enhanced Growth of Pilin-Deficient Geobacter sulfurreducens Mutants in Carbon Poor and Electron Donor Limiting Conditions.

Semenec L, Vergara IA, Laloo AE, Mathews ER, Bond PL, Franks AE.

Microb Ecol. 2019 Oct;78(3):618-630. doi: 10.1007/s00248-019-01316-8. Epub 2019 Feb 13. Erratum in: Microb Ecol. 2019 Mar 30;:.


Biogeographic Distribution Patterns of the Archaeal Communities Across the Black Soil Zone of Northeast China.

Liu J, Yu Z, Yao Q, Sui Y, Shi Y, Chu H, Tang C, Franks AE, Jin J, Liu X, Wang G.

Front Microbiol. 2019 Jan 25;10:23. doi: 10.3389/fmicb.2019.00023. eCollection 2019.


Inhibitory Effects of Sulfate and Nitrate Reduction on Reductive Dechlorination of PCP in a Flooded Paddy Soil.

Xu Y, Xue L, Ye Q, Franks AE, Zhu M, Feng X, Xu J, He Y.

Front Microbiol. 2018 Mar 28;9:567. doi: 10.3389/fmicb.2018.00567. eCollection 2018.


Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China.

Liu J, Yu Z, Yao Q, Sui Y, Shi Y, Chu H, Tang C, Franks AE, Jin J, Liu X, Wang G.

Front Microbiol. 2018 Feb 9;9:171. doi: 10.3389/fmicb.2018.00171. eCollection 2018.


Competitive Traits Are More Important than Stress-Tolerance Traits in a Cadmium-Contaminated Rhizosphere: A Role for Trait Theory in Microbial Ecology.

Wood JL, Tang C, Franks AE.

Front Microbiol. 2018 Feb 12;9:121. doi: 10.3389/fmicb.2018.00121. eCollection 2018.


Growth of Caenorhabditis elegans in Defined Media Is Dependent on Presence of Particulate Matter.

Flavel MR, Mechler A, Shahmiri M, Mathews ER, Franks AE, Chen W, Zanker D, Xian B, Gao S, Luo J, Tegegne S, Doneski C, Jois M.

G3 (Bethesda). 2018 Feb 2;8(2):567-575. doi: 10.1534/g3.117.300325.


Deciphering the electric code of Geobacter sulfurreducens in cocultures with Pseudomonas aeruginosa via SWATH-MS proteomics.

Semenec L, Laloo AE, Schulz BL, Vergara IA, Bond PL, Franks AE.

Bioelectrochemistry. 2018 Feb;119:150-160. doi: 10.1016/j.bioelechem.2017.09.013. Epub 2017 Oct 3.


Using Animal Models to Study the Role of the Gut-Brain Axis in Autism.

Nithianantharajah J, Balasuriya GK, Franks AE, Hill-Yardin EL.

Curr Dev Disord Rep. 2017;4(2):28-36. doi: 10.1007/s40474-017-0111-4. Epub 2017 May 12. Review.


Draft Genome Sequence of Leifsonia sp. Strain NCR5, a Rhizobacterium Isolated from Cadmium-Contaminated Soil.

Egidi E, Wood JL, Fox EM, Liu W, Franks AE.

Genome Announc. 2017 Jun 8;5(23). pii: e00520-17. doi: 10.1128/genomeA.00520-17.


Functional characterization of Gram-negative bacteria from different genera as multiplex cadmium biosensors.

Bereza-Malcolm L, Aracic S, Kannan R, Mann G, Franks AE.

Biosens Bioelectron. 2017 Aug 15;94:380-387. doi: 10.1016/j.bios.2017.03.029. Epub 2017 Mar 16.


Comparative analysis of microbial communities during enrichment and isolation of DDT-degrading bacteria by culture-dependent and -independent methods.

Wang B, Liu W, Liu X, Franks AE, Teng Y, Luo Y.

Sci Total Environ. 2017 Jul 15;590-591:297-303. doi: 10.1016/j.scitotenv.2017.03.004. Epub 2017 Mar 6.


Development and Application of a Synthetically-Derived Lead Biosensor Construct for Use in Gram-Negative Bacteria.

Bereza-Malcolm L, Aracic S, Franks AE.

Sensors (Basel). 2016 Dec 18;16(12). pii: E2174. doi: 10.3390/s16122174.


The antimicrobial resistance crisis: management through gene monitoring.

Michael CA, Franks AE, Labbate M.

Open Biol. 2016 Nov;6(11). pii: 160236.


Microbial community dynamics in the rhizosphere of a cadmium hyper-accumulator.

Wood JL, Zhang C, Mathews ER, Tang C, Franks AE.

Sci Rep. 2016 Nov 2;6:36067. doi: 10.1038/srep36067.


Draft Genome Sequence of Rhodococcus erythropolis NSX2, an Actinobacterium Isolated from a Cadmium-Contaminated Environment.

Egidi E, Wood JL, Fox EM, Liu W, Franks AE.

Genome Announc. 2016 Oct 20;4(5). pii: e01147-16. doi: 10.1128/genomeA.01147-16.


Draft Genome Sequence of Enterobacter ludwigii NCR3, a Heavy Metal-Resistant Rhizobacterium.

Egidi E, Wood JL, Aracic S, Kannan R, McDonald L, Bell CA, Fox EM, Liu W, Franks AE.

Genome Announc. 2016 Oct 6;4(5). pii: e01076-16. doi: 10.1128/genomeA.01076-16.


Draft Genome Sequence of Bacillus cereus LCR12, a Plant Growth-Promoting Rhizobacterium Isolated from a Heavy Metal-Contaminated Environment.

Egidi E, Wood JL, Mathews E, Fox E, Liu W, Franks AE.

Genome Announc. 2016 Sep 29;4(5). pii: e01041-16. doi: 10.1128/genomeA.01041-16.


Fire regime, not time-since-fire, affects soil fungal community diversity and composition in temperate grasslands.

Egidi E, McMullan-Fisher S, Morgan JW, May T, Zeeman B, Franks AE.

FEMS Microbiol Lett. 2016 Sep;363(17). pii: fnw196. doi: 10.1093/femsle/fnw196. Epub 2016 Aug 14.


The Low Conductivity of Geobacter uraniireducens Pili Suggests a Diversity of Extracellular Electron Transfer Mechanisms in the Genus Geobacter.

Tan Y, Adhikari RY, Malvankar NS, Ward JE, Nevin KP, Woodard TL, Smith JA, Snoeyenbos-West OL, Franks AE, Tuominen MT, Lovley DR.

Front Microbiol. 2016 Jun 28;7:980. doi: 10.3389/fmicb.2016.00980. eCollection 2016.


Characteristics of metal-tolerant plant growth-promoting yeast (Cryptococcus sp. NSE1) and its influence on Cd hyperaccumulator Sedum plumbizincicola.

Liu W, Wang B, Wang Q, Hou J, Wu L, Wood JL, Luo Y, Franks AE.

Environ Sci Pollut Res Int. 2016 Sep;23(18):18621-9. doi: 10.1007/s11356-016-7041-2. Epub 2016 Jun 15.


Bioengineering microbial communities: Their potential to help, hinder and disgust.

Sivasubramaniam D, Franks AE.

Bioengineered. 2016 Apr;7(3):137-44. doi: 10.1080/21655979.2016.1187346.


Innovative biological approaches for monitoring and improving water quality.

Aracic S, Manna S, Petrovski S, Wiltshire JL, Mann G, Franks AE.

Front Microbiol. 2015 Aug 12;6:826. doi: 10.3389/fmicb.2015.00826. eCollection 2015. Review.


Uptake of milk with and without solid feed during the monogastric phase: Effect on fibrolytic and methanogenic microorganisms in the gastrointestinal tract of calves.

Guzman CE, Bereza-Malcolm LT, De Groef B, Franks AE.

Anim Sci J. 2016 Mar;87(3):378-88. doi: 10.1111/asj.12429. Epub 2015 Aug 7.


PGPR enhanced phytoremediation of petroleum contaminated soil and rhizosphere microbial community response.

Hou J, Liu W, Wang B, Wang Q, Luo Y, Franks AE.

Chemosphere. 2015 Nov;138:592-8. doi: 10.1016/j.chemosphere.2015.07.025. Epub 2015 Jul 24.


Presence of Selected Methanogens, Fibrolytic Bacteria, and Proteobacteria in the Gastrointestinal Tract of Neonatal Dairy Calves from Birth to 72 Hours.

Guzman CE, Bereza-Malcolm LT, De Groef B, Franks AE.

PLoS One. 2015 Jul 17;10(7):e0133048. doi: 10.1371/journal.pone.0133048. eCollection 2015.


Investigating microbial activities of electrode-associated microorganisms in real-time.

Aracic S, Semenec L, Franks AE.

Front Microbiol. 2014 Nov 28;5:663. doi: 10.3389/fmicb.2014.00663. eCollection 2014.


Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.

Shrestha PM, Malvankar NS, Werner JJ, Franks AE, Elena-Rotaru A, Shrestha M, Liu F, Nevin KP, Angenent LT, Lovley DR.

Bioresour Technol. 2014 Dec;174:306-10. doi: 10.1016/j.biortech.2014.10.004. Epub 2014 Oct 8.


Environmental sensing of heavy metals through whole cell microbial biosensors: a synthetic biology approach.

Bereza-Malcolm LT, Mann G, Franks AE.

ACS Synth Biol. 2015 May 15;4(5):535-46. doi: 10.1021/sb500286r. Epub 2014 Oct 21. Review.


Going wireless: Fe(III) oxide reduction without pili by Geobacter sulfurreducens strain JS-1.

Smith JA, Tremblay PL, Shrestha PM, Snoeyenbos-West OL, Franks AE, Nevin KP, Lovley DR.

Appl Environ Microbiol. 2014 Jul;80(14):4331-40. doi: 10.1128/AEM.01122-14. Epub 2014 May 9.


Microbial catalysis in bioelectrochemical technologies: status quo, challenges and perspectives.

Rosenbaum MA, Franks AE.

Appl Microbiol Biotechnol. 2014 Jan;98(2):509-18. doi: 10.1007/s00253-013-5396-6. Epub 2013 Nov 24. Review.


Electrical conductivity in a mixed-species biofilm.

Malvankar NS, Lau J, Nevin KP, Franks AE, Tuominen MT, Lovley DR.

Appl Environ Microbiol. 2012 Aug;78(16):5967-71. doi: 10.1128/AEM.01803-12. Epub 2012 Jun 15.


Real-time spatial gene expression analysis within current-producing biofilms.

Franks AE, Glaven RH, Lovley DR.

ChemSusChem. 2012 Jun;5(6):1092-8. doi: 10.1002/cssc.201100714. Epub 2012 May 10.


Geobacter: the microbe electric's physiology, ecology, and practical applications.

Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru AE, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP.

Adv Microb Physiol. 2011;59:1-100. doi: 10.1016/B978-0-12-387661-4.00004-5. Review.


Potential for direct interspecies electron transfer in methanogenic wastewater digester aggregates.

Morita M, Malvankar NS, Franks AE, Summers ZM, Giloteaux L, Rotaru AE, Rotaru C, Lovley DR.

MBio. 2011 Sep 1;2(4):e00159-11. doi: 10.1128/mBio.00159-11. Print 2011.


Tunable metallic-like conductivity in microbial nanowire networks.

Malvankar NS, Vargas M, Nevin KP, Franks AE, Leang C, Kim BC, Inoue K, Mester T, Covalla SF, Johnson JP, Rotello VM, Tuominen MT, Lovley DR.

Nat Nanotechnol. 2011 Aug 7;6(9):573-9. doi: 10.1038/nnano.2011.119.


Specific localization of the c-type cytochrome OmcZ at the anode surface in current-producing biofilms of Geobacter sulfurreducens.

Inoue K, Leang C, Franks AE, Woodard TL, Nevin KP, Lovley DR.

Environ Microbiol Rep. 2011 Apr;3(2):211-7. doi: 10.1111/j.1758-2229.2010.00210.x. Epub 2010 Aug 26.


Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.

Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.

Appl Environ Microbiol. 2011 May;77(9):2882-6. doi: 10.1128/AEM.02642-10. Epub 2011 Mar 4.


Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria.

Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS, Lovley DR.

Science. 2010 Dec 3;330(6009):1413-5. doi: 10.1126/science.1196526.


Microbial electrosynthesis: feeding microbes electricity to convert carbon dioxide and water to multicarbon extracellular organic compounds.

Nevin KP, Woodard TL, Franks AE, Summers ZM, Lovley DR.

MBio. 2010 May 25;1(2). pii: e00103-10. doi: 10.1128/mBio.00103-10.


Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.

Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR.

FEMS Microbiol Lett. 2010 Sep 1;310(1):62-8. doi: 10.1111/j.1574-6968.2010.02046.x. Epub 2010 Jun 23.

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