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Items: 22

1.

Reducing the Bottleneck in Discovery of Novel Antibiotics.

Jones MB, Nierman WC, Shan Y, Frank BC, Spoering A, Ling L, Peoples A, Zullo A, Lewis K, Nelson KE.

Microb Ecol. 2017 Apr;73(3):658-667. doi: 10.1007/s00248-016-0889-3. Epub 2016 Nov 28.

PMID:
27896376
2.

Genomic and transcriptomic differences in community acquired methicillin resistant Staphylococcus aureus USA300 and USA400 strains.

Jones MB, Montgomery CP, Boyle-Vavra S, Shatzkes K, Maybank R, Frank BC, Peterson SN, Daum RS.

BMC Genomics. 2014 Dec 19;15:1145. doi: 10.1186/1471-2164-15-1145.

3.

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection.

Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN.

PLoS One. 2013 Jun 26;8(6):e67155. doi: 10.1371/journal.pone.0067155. Print 2013.

4.

A multi-omic systems approach to elucidating Yersinia virulence mechanisms.

Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, Motin VL, Adkins JN.

Mol Biosyst. 2013 Jan 27;9(1):44-54. doi: 10.1039/c2mb25287b. Epub 2012 Nov 13.

5.

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.

Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO.

Mol Syst Biol. 2012 Jun 26;8:558. doi: 10.1038/msb.2012.21.

6.

Comparative omics-driven genome annotation refinement: application across Yersiniae.

Schrimpe-Rutledge AC, Jones MB, Chauhan S, Purvine SO, Sanford JA, Monroe ME, Brewer HM, Payne SH, Ansong C, Frank BC, Smith RD, Peterson SN, Motin VL, Adkins JN.

PLoS One. 2012;7(3):e33903. doi: 10.1371/journal.pone.0033903. Epub 2012 Mar 27. Erratum in: PLoS One. 2012;7(8). doi: 10.1371/annotation/03110e8b-3e10-4334-9ff7-969c85ad25d8.

7.

Positional identification of variants of Adamts16 linked to inherited hypertension.

Joe B, Saad Y, Dhindaw S, Lee NH, Frank BC, Achinike OH, Luu TV, Gopalakrishnan K, Toland EJ, Farms P, Yerga-Woolwine S, Manickavasagam E, Rapp JP, Garrett MR, Coe D, Apte SS, Rankinen T, Pérusse L, Ehret GB, Ganesh SK, Cooper RS, O'Connor A, Rice T, Weder AB, Chakravarti A, Rao DC, Bouchard C.

Hum Mol Genet. 2009 Aug 1;18(15):2825-38. doi: 10.1093/hmg/ddp218. Epub 2009 May 7. Erratum in: Hum Mol Genet. 2011 Nov 1;20(21):4297. Dhindaw, Seema [added].

8.

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.

Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, An K, Chou HH, Rocke D, Lee GC, Schnable PS, An G, Buell CR, Ronald PC.

PLoS One. 2008 Oct 6;3(10):e3337. doi: 10.1371/journal.pone.0003337.

9.

Molecular networks in Dahl salt-sensitive hypertension based on transcriptome analysis of a panel of consomic rats.

Liang M, Lee NH, Wang H, Greene AS, Kwitek AE, Kaldunski ML, Luu TV, Frank BC, Bugenhagen S, Jacob HJ, Cowley AW Jr.

Physiol Genomics. 2008 Jun 12;34(1):54-64. doi: 10.1152/physiolgenomics.00031.2008. Epub 2008 Apr 22.

PMID:
18430809
10.

Closely linked non-additive blood pressure quantitative trait loci.

Toland EJ, Saad Y, Yerga-Woolwine S, Ummel S, Farms P, Ramdath R, Frank BC, Lee NH, Joe B.

Mamm Genome. 2008 Mar;19(3):209-18. doi: 10.1007/s00335-008-9093-1. Epub 2008 Mar 7.

PMID:
18324438
11.

Cross-talk of expression quantitative trait loci within 2 interacting blood pressure quantitative trait loci.

Lee NH, Haas BJ, Letwin NE, Frank BC, Luu TV, Sun Q, House CD, Yerga-Woolwine S, Farms P, Manickavasagam E, Joe B.

Hypertension. 2007 Dec;50(6):1126-33. Epub 2007 Oct 15.

PMID:
17938377
13.

Combined application of behavior genetics and microarray analysis to identify regional expression themes and gene-behavior associations.

Letwin NE, Kafkafi N, Benjamini Y, Mayo C, Frank BC, Luu T, Lee NH, Elmer GI.

J Neurosci. 2006 May 17;26(20):5277-87.

14.

Multiple-laboratory comparison of microarray platforms.

Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W.

Nat Methods. 2005 May;2(5):345-50. Epub 2005 Apr 21. Erratum in: Nat Methods. 2005 Jun;2(6):477.

15.

Independence and reproducibility across microarray platforms.

Larkin JE, Frank BC, Gavras H, Sultana R, Quackenbush J.

Nat Methods. 2005 May;2(5):337-44. Epub 2005 Apr 21.

16.

Iterative microarray and RNA interference-based interrogation of the SRC-induced invasive phenotype.

Irby RB, Malek RL, Bloom G, Tsai J, Letwin N, Frank BC, Verratti K, Yeatman TJ, Lee NH.

Cancer Res. 2005 Mar 1;65(5):1814-21.

17.

Genetic regulation of endotoxin-induced airway disease.

Cook DN, Wang S, Wang Y, Howles GP, Whitehead GS, Berman KG, Church TD, Frank BC, Gaspard RM, Yu Y, Quackenbush J, Schwartz DA.

Genomics. 2004 Jun;83(6):961-9.

PMID:
15177550
18.

Cardiac transcriptional response to acute and chronic angiotensin II treatments.

Larkin JE, Frank BC, Gaspard RM, Duka I, Gavras H, Quackenbush J.

Physiol Genomics. 2004 Jul 8;18(2):152-66.

PMID:
15126644
19.

Within the fold: assessing differential expression measures and reproducibility in microarray assays.

Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J.

Genome Biol. 2002 Oct 24;3(11):research0062. Epub 2002 Oct 24.

20.

Telomere dynamics in cells with introduced telomerase: a rapid assay for telomerase activity on telomeres.

McChesney PA, Aisner DL, Frank BC, Wright WE, Shay JW.

Mol Cell Biol Res Commun. 2000 May;3(5):312-8.

PMID:
10964756
21.

Two inactive fragments of the integral RNA cooperate to assemble active telomerase with the human protein catalytic subunit (hTERT) in vitro.

Tesmer VM, Ford LP, Holt SE, Frank BC, Yi X, Aisner DL, Ouellette M, Shay JW, Wright WE.

Mol Cell Biol. 1999 Sep;19(9):6207-16.

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