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Items: 1 to 50 of 60

1.

Crystalline Niobium Carbide Superconducting Nanowires Prepared by Focused Ion Beam Direct Writing.

Porrati F, Barth S, Sachser R, Dobrovolskiy OV, Seybert A, Frangakis AS, Huth M.

ACS Nano. 2019 Jun 25;13(6):6287-6296. doi: 10.1021/acsnano.9b00059. Epub 2019 May 7.

PMID:
31046238
2.

The desmosome is a mesoscale lipid raft-like membrane domain.

Lewis JD, Caldara AL, Zimmer SE, Stahley SN, Seybold A, Strong NL, Frangakis AS, Levental I, Wahl JK 3rd, Mattheyses AL, Sasaki T, Nakabayashi K, Hata K, Matsubara Y, Ishida-Yamamoto A, Amagai M, Kubo A, Kowalczyk AP.

Mol Biol Cell. 2019 Jun 1;30(12):1390-1405. doi: 10.1091/mbc.E18-10-0649. Epub 2019 Apr 3.

3.

FIB-SEM imaging properties of Drosophila melanogaster tissues embedded in Lowicryl HM20.

Porrati F, Grewe D, Seybert A, Frangakis AS, Eltsov M.

J Microsc. 2019 Feb;273(2):91-104. doi: 10.1111/jmi.12764. Epub 2018 Nov 12.

PMID:
30417390
4.

The molecular recognition of phosphatidic acid by an amphipathic helix in Opi1.

Hofbauer HF, Gecht M, Fischer SC, Seybert A, Frangakis AS, Stelzer EHK, Covino R, Hummer G, Ernst R.

J Cell Biol. 2018 Sep 3;217(9):3109-3126. doi: 10.1083/jcb.201802027. Epub 2018 Jun 25.

5.

Cryo-electron tomography analyses of terminal organelle mutants suggest the motility mechanism of Mycoplasma genitalium.

Seybert A, Gonzalez-Gonzalez L, Scheffer MP, Lluch-Senar M, Mariscal AM, Querol E, Matthaeus F, Piñol J, Frangakis AS.

Mol Microbiol. 2018 May;108(3):319-329. doi: 10.1111/mmi.13938. Epub 2018 Mar 24.

6.

A thin CdSe shell boosts the electron transfer from CdTe quantum dots to methylene blue.

Dworak L, Roth S, Scheffer MP, Frangakis AS, Wachtveitl J.

Nanoscale. 2018 Jan 25;10(4):2162-2169. doi: 10.1039/c7nr08287h.

PMID:
29327031
7.

Structural characterization of the NAP; the major adhesion complex of the human pathogen Mycoplasma genitalium.

Scheffer MP, Gonzalez-Gonzalez L, Seybert A, Ratera M, Kunz M, Valpuesta JM, Fita I, Querol E, Piñol J, Martín-Benito J, Frangakis AS.

Mol Microbiol. 2017 Sep;105(6):869-879. doi: 10.1111/mmi.13743. Epub 2017 Jul 17.

8.

Blood RNA biomarkers in prodromal PARK4 and rapid eye movement sleep behavior disorder show role of complexin 1 loss for risk of Parkinson's disease.

Lahut S, Gispert S, Ömür Ö, Depboylu C, Seidel K, Domínguez-Bautista JA, Brehm N, Tireli H, Hackmann K, Pirkevi C, Leube B, Ries V, Reim K, Brose N, den Dunnen WF, Johnson M, Wolf Z, Schindewolf M, Schrempf W, Reetz K, Young P, Vadasz D, Frangakis AS, Schröck E, Steinmetz H, Jendrach M, Rüb U, Başak AN, Oertel W, Auburger G.

Dis Model Mech. 2017 May 1;10(5):619-631. doi: 10.1242/dmm.028035. Epub 2017 Jan 20.

9.

Structure of RNA polymerase I transcribing ribosomal DNA genes.

Neyer S, Kunz M, Geiss C, Hantsche M, Hodirnau VV, Seybert A, Engel C, Scheffer MP, Cramer P, Frangakis AS.

Nature. 2016 Dec 22;540(7634):607-610. doi: 10.1038/nature20561. Epub 2016 Nov 14.

PMID:
27842382
10.

A flexible, multilayered protein scaffold maintains the slit in between glomerular podocytes.

Grahammer F, Wigge C, Schell C, Kretz O, Patrakka J, Schneider S, Klose M, Kind J, Arnold SJ, Habermann A, Bräuniger R, Rinschen MM, Völker L, Bregenzer A, Rubbenstroth D, Boerries M, Kerjaschki D, Miner JH, Walz G, Benzing T, Fornoni A, Frangakis AS, Huber TB.

JCI Insight. 2016 Jun 16;1(9). pii: 86177. doi: 10.1172/jci.insight.86177.

11.

Helical arrays of U-shaped ATP synthase dimers form tubular cristae in ciliate mitochondria.

Mühleip AW, Joos F, Wigge C, Frangakis AS, Kühlbrandt W, Davies KM.

Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8442-7. doi: 10.1073/pnas.1525430113. Epub 2016 Jul 11.

12.

Three-dimensional CTF correction improves the resolution of electron tomograms.

Kunz M, Frangakis AS.

J Struct Biol. 2017 Feb;197(2):114-122. doi: 10.1016/j.jsb.2016.06.016. Epub 2016 Jun 23.

PMID:
27343995
13.

M-free: Mask-independent scoring of the reference bias.

Kunz M, Yu Z, Frangakis AS.

J Struct Biol. 2015 Nov;192(2):307-11. doi: 10.1016/j.jsb.2015.08.016. Epub 2015 Aug 29.

PMID:
26325584
14.

Quantitative analysis of cytoskeletal reorganization during epithelial tissue sealing by large-volume electron tomography.

Eltsov M, Dubé N, Yu Z, Pasakarnis L, Haselmann-Weiss U, Brunner D, Frangakis AS.

Nat Cell Biol. 2015 May;17(5):605-14. doi: 10.1038/ncb3159. Epub 2015 Apr 20.

PMID:
25893916
15.

PLEKHM1 regulates Salmonella-containing vacuole biogenesis and infection.

McEwan DG, Richter B, Claudi B, Wigge C, Wild P, Farhan H, McGourty K, Coxon FP, Franz-Wachtel M, Perdu B, Akutsu M, Habermann A, Kirchof A, Helfrich MH, Odgren PR, Van Hul W, Frangakis AS, Rajalingam K, Macek B, Holden DW, Bumann D, Dikic I.

Cell Host Microbe. 2015 Jan 14;17(1):58-71. doi: 10.1016/j.chom.2014.11.011. Epub 2014 Dec 11.

16.

Super-sampling SART with ordered subsets.

Kunz M, Frangakis AS.

J Struct Biol. 2014 Nov;188(2):107-15. doi: 10.1016/j.jsb.2014.09.010. Epub 2014 Oct 2.

PMID:
25281496
17.

M-free: scoring the reference bias in sub-tomogram averaging and template matching.

Yu Z, Frangakis AS.

J Struct Biol. 2014 Jul;187(1):10-19. doi: 10.1016/j.jsb.2014.05.007. Epub 2014 May 22.

18.

Correlative light- and electron microscopy with chemical tags.

Perkovic M, Kunz M, Endesfelder U, Bunse S, Wigge C, Yu Z, Hodirnau VV, Scheffer MP, Seybert A, Malkusch S, Schuman EM, Heilemann M, Frangakis AS.

J Struct Biol. 2014 May;186(2):205-13. doi: 10.1016/j.jsb.2014.03.018. Epub 2014 Mar 31.

19.

CENP-A arrays are more condensed than canonical arrays at low ionic strength.

Geiss CP, Keramisanou D, Sekulic N, Scheffer MP, Black BE, Frangakis AS.

Biophys J. 2014 Feb 18;106(4):875-82. doi: 10.1016/j.bpj.2014.01.005.

20.

Three-dimensional visualization of the molecular architecture of cell-cell junctions in situ by cryo-electron tomography of vitreous sections.

Al-Amoudi A, Frangakis AS.

Methods Mol Biol. 2013;961:97-117. doi: 10.1007/978-1-62703-227-8_4.

PMID:
23325637
21.

3D Ultrastructural organization of whole Chlamydomonas reinhardtii cells studied by nanoscale soft x-ray tomography.

Hummel E, Guttmann P, Werner S, Tarek B, Schneider G, Kunz M, Frangakis AS, Westermann B.

PLoS One. 2012;7(12):e53293. doi: 10.1371/journal.pone.0053293. Epub 2012 Dec 31.

22.

Heritable yeast prions have a highly organized three-dimensional architecture with interfiber structures.

Saibil HR, Seybert A, Habermann A, Winkler J, Eltsov M, Perkovic M, Castaño-Diez D, Scheffer MP, Haselmann U, Chlanda P, Lindquist S, Tyedmers J, Frangakis AS.

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):14906-11. doi: 10.1073/pnas.1211976109. Epub 2012 Aug 27.

23.

Room temperature L1₀ phase transformation in binary CoPt nanostructures prepared by focused-electron-beam-induced deposition.

Porrati F, Begun E, Winhold M, Schwalb ChH, Sachser R, Frangakis AS, Huth M.

Nanotechnology. 2012 May 11;23(18):185702. doi: 10.1088/0957-4484/23/18/185702. Epub 2012 Apr 13.

PMID:
22499135
24.

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.

Nishino Y, Eltsov M, Joti Y, Ito K, Takata H, Takahashi Y, Hihara S, Frangakis AS, Imamoto N, Ishikawa T, Maeshima K.

EMBO J. 2012 Apr 4;31(7):1644-53. doi: 10.1038/emboj.2012.35. Epub 2012 Feb 17.

25.

Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs.

Hergenreider E, Heydt S, Tréguer K, Boettger T, Horrevoets AJ, Zeiher AM, Scheffer MP, Frangakis AS, Yin X, Mayr M, Braun T, Urbich C, Boon RA, Dimmeler S.

Nat Cell Biol. 2012 Feb 12;14(3):249-56. doi: 10.1038/ncb2441.

PMID:
22327366
26.

Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro.

Scheffer MP, Eltsov M, Bednar J, Frangakis AS.

J Struct Biol. 2012 May;178(2):207-14. doi: 10.1016/j.jsb.2011.11.020. Epub 2011 Nov 22.

PMID:
22138167
27.

Binary Pt-Si nanostructures prepared by focused electron-beam-induced deposition.

Winhold M, Schwalb CH, Porrati F, Sachser R, Frangakis AS, Kämpken B, Terfort A, Auner N, Huth M.

ACS Nano. 2011 Dec 27;5(12):9675-81. doi: 10.1021/nn203134a. Epub 2011 Nov 29.

PMID:
22050515
28.

Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei.

Scheffer MP, Eltsov M, Frangakis AS.

Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16992-7. doi: 10.1073/pnas.1108268108. Epub 2011 Oct 3.

29.

The three-dimensional molecular structure of the desmosomal plaque.

Al-Amoudi A, Castaño-Diez D, Devos DP, Russell RB, Johnson GT, Frangakis AS.

Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6480-5. doi: 10.1073/pnas.1019469108. Epub 2011 Apr 4.

30.

Classification of electron sub-tomograms with neural networks and its application to template-matching.

Yu Z, Frangakis AS.

J Struct Biol. 2011 Jun;174(3):494-504. doi: 10.1016/j.jsb.2011.02.009. Epub 2011 Mar 5.

PMID:
21382496
31.

Structure of reconstituted bacterial membrane efflux pump by cryo-electron tomography.

Trépout S, Taveau JC, Benabdelhak H, Granier T, Ducruix A, Frangakis AS, Lambert O.

Biochim Biophys Acta. 2010 Oct;1798(10):1953-60. doi: 10.1016/j.bbamem.2010.06.019. Epub 2010 Jul 1.

32.

Visualization of macromolecular structures.

O'Donoghue SI, Goodsell DS, Frangakis AS, Jossinet F, Laskowski RA, Nilges M, Saibil HR, Schafferhans A, Wade RC, Westhof E, Olson AJ.

Nat Methods. 2010 Mar;7(3 Suppl):S42-55. doi: 10.1038/nmeth.1427. Epub 2010 Mar 1. Review.

PMID:
20195256
33.

Alignator: a GPU powered software package for robust fiducial-less alignment of cryo tilt-series.

Castaño-Díez D, Scheffer M, Al-Amoudi A, Frangakis AS.

J Struct Biol. 2010 Apr;170(1):117-26. doi: 10.1016/j.jsb.2010.01.014. Epub 2010 Feb 1.

PMID:
20117216
34.

Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing.

Winkler J, Seybert A, König L, Pruggnaller S, Haselmann U, Sourjik V, Weiss M, Frangakis AS, Mogk A, Bukau B.

EMBO J. 2010 Mar 3;29(5):910-23. doi: 10.1038/emboj.2009.412. Epub 2010 Jan 21.

35.

Proteome organization in a genome-reduced bacterium.

Kühner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castaño-Diez D, Chen WH, Devos D, Güell M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Böttcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC.

Science. 2009 Nov 27;326(5957):1235-40. doi: 10.1126/science.1176343.

36.

Cytoplasmic relaxation of active Eph controls ephrin shedding by ADAM10.

Janes PW, Wimmer-Kleikamp SH, Frangakis AS, Treble K, Griesshaber B, Sabet O, Grabenbauer M, Ting AY, Saftig P, Bastiaens PI, Lackmann M.

PLoS Biol. 2009 Oct;7(10):e1000215. doi: 10.1371/journal.pbio.1000215. Epub 2009 Oct 13.

37.

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ.

Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19732-7. doi: 10.1073/pnas.0810057105. Epub 2008 Dec 8.

38.

Performance evaluation of image processing algorithms on the GPU.

Castaño-Díez D, Moser D, Schoenegger A, Pruggnaller S, Frangakis AS.

J Struct Biol. 2008 Oct;164(1):153-60. doi: 10.1016/j.jsb.2008.07.006. Epub 2008 Jul 24.

PMID:
18692140
39.

A visualization and segmentation toolbox for electron microscopy.

Pruggnaller S, Mayr M, Frangakis AS.

J Struct Biol. 2008 Oct;164(1):161-5. doi: 10.1016/j.jsb.2008.05.003. Epub 2008 May 17.

PMID:
18691905
40.

Structural studies on desmosomes.

Al-Amoudi A, Frangakis AS.

Biochem Soc Trans. 2008 Apr;36(Pt 2):181-7. doi: 10.1042/BST0360181. Review.

PMID:
18363559
41.

Reprint of "Fiducial-less alignment of cryo-sections" [J. Struct. Biol. 159 (2007) 413-423].

Castaño-Díez D, Al-Amoudi A, Glynn AM, Seybert A, Frangakis AS.

J Struct Biol. 2008 Mar;161(3):249-59. doi: 10.1016/S1047-8477(08)00060-9.

PMID:
18342740
42.

The molecular architecture of cadherins in native epidermal desmosomes.

Al-Amoudi A, Díez DC, Betts MJ, Frangakis AS.

Nature. 2007 Dec 6;450(7171):832-7.

PMID:
18064004
43.

Classification of cryo-electron sub-tomograms using constrained correlation.

Förster F, Pruggnaller S, Seybert A, Frangakis AS.

J Struct Biol. 2008 Mar;161(3):276-86. Epub 2007 Jul 26.

PMID:
17720536
44.

Fiducial-less alignment of cryo-sections.

Castaño-Díez D, Al-Amoudi A, Glynn AM, Seybert A, Frangakis AS.

J Struct Biol. 2007 Sep;159(3):413-23. Epub 2007 Jun 9.

PMID:
17651988
45.

Plastic-embedded protein crystals.

Ravelli RB, Haselmann-Weiss U, McGeehan JE, McCarthy AA, Marquez JA, Antony C, Frangakis AS, Stranzl G.

J Synchrotron Radiat. 2007 Jan;14(Pt 1):128-32. Epub 2006 Dec 15.

PMID:
17211079
46.

Visualization of cell microtubules in their native state.

Bouchet-Marquis C, Zuber B, Glynn AM, Eltsov M, Grabenbauer M, Goldie KN, Thomas D, Frangakis AS, Dubochet J, Chrétien D.

Biol Cell. 2007 Jan;99(1):45-53.

PMID:
17049046
47.

Implementation and performance evaluation of reconstruction algorithms on graphics processors.

Castaño Díez D, Mueller H, Frangakis AS.

J Struct Biol. 2007 Jan;157(1):288-95. Epub 2006 Sep 1.

PMID:
17029985
48.

Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography.

Briegel A, Dias DP, Li Z, Jensen RB, Frangakis AS, Jensen GJ.

Mol Microbiol. 2006 Oct;62(1):5-14.

49.

Structural analysis of Mycoplasma pneumoniae by cryo-electron tomography.

Seybert A, Herrmann R, Frangakis AS.

J Struct Biol. 2006 Nov;156(2):342-54. Epub 2006 May 7.

PMID:
16875842
50.

Tilt-series and electron microscope alignment for the correction of the non-perpendicularity of beam and tilt-axis.

Díez DC, Seybert A, Frangakis AS.

J Struct Biol. 2006 May;154(2):195-205. Epub 2006 Jan 26.

PMID:
16503168

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