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Items: 1 to 50 of 72

1.

Overexpression of delta-12 desaturase in the yeast Schwanniomyces occidentalis enhances the production of linoleic acid.

Lamers D, Visscher B, Weusthuis RA, Francke C, Wijffels RH, Lokman C.

Bioresour Technol. 2019 Oct;289:121672. doi: 10.1016/j.biortech.2019.121672. Epub 2019 Jun 20.

2.

DnaJ chaperones contribute to canalization.

Hughes S, Vrinds I, de Roo J, Francke C, Shimeld SM, Woollard A, Sato A.

J Exp Zool A Ecol Integr Physiol. 2019 Mar;331(3):201-212. doi: 10.1002/jez.2254. Epub 2019 Jan 17.

PMID:
30653842
3.

A Novel Quality Measure and Correction Procedure for the Annotation of Microbial Translation Initiation Sites.

Overmars L, Siezen RJ, Francke C.

PLoS One. 2015 Jul 23;10(7):e0133691. doi: 10.1371/journal.pone.0133691. eCollection 2015.

4.

CiVi: circular genome visualization with unique features to analyze sequence elements.

Overmars L, van Hijum SA, Siezen RJ, Francke C.

Bioinformatics. 2015 Sep 1;31(17):2867-9. doi: 10.1093/bioinformatics/btv249. Epub 2015 Apr 24.

PMID:
25910699
5.

Classification of the adenylation and acyl-transferase activity of NRPS and PKS systems using ensembles of substrate specific hidden Markov models.

Khayatt BI, Overmars L, Siezen RJ, Francke C.

PLoS One. 2013 Apr 18;8(4):e62136. doi: 10.1371/journal.pone.0062136. Print 2013.

6.

MGcV: the microbial genomic context viewer for comparative genome analysis.

Overmars L, Kerkhoven R, Siezen RJ, Francke C.

BMC Genomics. 2013 Apr 1;14:209. doi: 10.1186/1471-2164-14-209.

7.

Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli.

Groot Kormelink T, Koenders E, Hagemeijer Y, Overmars L, Siezen RJ, de Vos WM, Francke C.

BMC Genomics. 2012 May 18;13:191. doi: 10.1186/1471-2164-13-191.

8.

Computational analysis of cysteine and methionine metabolism and its regulation in dairy starter and related bacteria.

Liu M, Prakash C, Nauta A, Siezen RJ, Francke C.

J Bacteriol. 2012 Jul;194(13):3522-33. doi: 10.1128/JB.06816-11. Epub 2012 Apr 20.

9.

Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.

Siezen RJ, Francke C, Renckens B, Boekhorst J, Wels M, Kleerebezem M, van Hijum SA.

J Bacteriol. 2012 Jan;194(1):195-6. doi: 10.1128/JB.06275-11.

10.

Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior.

Francke C, Groot Kormelink T, Hagemeijer Y, Overmars L, Sluijter V, Moezelaar R, Siezen RJ.

BMC Genomics. 2011 Aug 1;12:385. doi: 10.1186/1471-2164-12-385.

11.

Reconstruction of the regulatory network of Lactobacillus plantarum WCFS1 on basis of correlated gene expression and conserved regulatory motifs.

Wels M, Overmars L, Francke C, Kleerebezem M, Siezen RJ.

Microb Biotechnol. 2011 May;4(3):333-44. doi: 10.1111/j.1751-7915.2010.00217.x. Epub 2010 Oct 26.

12.

Isolation of highly heat-resistant Listeria monocytogenes variants by use of a kinetic modeling-based sampling scheme.

Van Boeijen IK, Francke C, Moezelaar R, Abee T, Zwietering MH.

Appl Environ Microbiol. 2011 Apr;77(8):2617-24. doi: 10.1128/AEM.02617-10. Epub 2011 Feb 25.

13.

Clostridial spore germination versus bacilli: genome mining and current insights.

Xiao Y, Francke C, Abee T, Wells-Bennik MH.

Food Microbiol. 2011 Apr;28(2):266-74. doi: 10.1016/j.fm.2010.03.016. Epub 2010 Apr 1.

PMID:
21315983
14.

Novel sigmaB regulation modules of Gram-positive bacteria involve the use of complex hybrid histidine kinases.

de Been M, Francke C, Siezen RJ, Abee T.

Microbiology. 2011 Jan;157(Pt 1):3-12. doi: 10.1099/mic.0.045740-0. Epub 2010 Nov 4. Review.

PMID:
21051490
15.

Complete genome sequence of the probiotic Lactobacillus casei strain BL23.

Mazé A, Boël G, Zúñiga M, Bourand A, Loux V, Yebra MJ, Monedero V, Correia K, Jacques N, Beaufils S, Poncet S, Joyet P, Milohanic E, Casarégola S, Auffray Y, Pérez-Martínez G, Gibrat JF, Zagorec M, Francke C, Hartke A, Deutscher J.

J Bacteriol. 2010 May;192(10):2647-8. doi: 10.1128/JB.00076-10. Epub 2010 Mar 26.

16.

Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus.

Beekwilder J, Marcozzi D, Vecchi S, de Vos R, Janssen P, Francke C, van Hylckama Vlieg J, Hall RD.

Appl Environ Microbiol. 2009 Jun;75(11):3447-54. doi: 10.1128/AEM.02675-08. Epub 2009 Apr 3.

17.

The identification of response regulator-specific binding sites reveals new roles of two-component systems in Bacillus cereus and closely related low-GC Gram-positives.

de Been M, Bart MJ, Abee T, Siezen RJ, Francke C.

Environ Microbiol. 2008 Oct;10(10):2796-809. doi: 10.1111/j.1462-2920.2008.01700.x. Epub 2008 Jul 25.

PMID:
18662309
18.

An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters.

Wels M, Groot Kormelink T, Kleerebezem M, Siezen RJ, Francke C.

BMC Genomics. 2008 Jul 14;9:330. doi: 10.1186/1471-2164-9-330.

19.

Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria.

Liu M, Nauta A, Francke C, Siezen RJ.

Appl Environ Microbiol. 2008 Aug;74(15):4590-600. doi: 10.1128/AEM.00150-08. Epub 2008 Jun 6. Review. No abstract available.

20.

LocateP: genome-scale subcellular-location predictor for bacterial proteins.

Zhou M, Boekhorst J, Francke C, Siezen RJ.

BMC Bioinformatics. 2008 Mar 27;9:173. doi: 10.1186/1471-2105-9-173.

21.
22.

Making sense of quorum sensing in lactobacilli: a special focus on Lactobacillus plantarum WCFS1.

Sturme MH, Francke C, Siezen RJ, de Vos WM, Kleerebezem M.

Microbiology. 2007 Dec;153(Pt 12):3939-47. Review.

PMID:
18048908
23.

How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria.

Deutscher J, Francke C, Postma PW.

Microbiol Mol Biol Rev. 2006 Dec;70(4):939-1031. Review. Erratum in: Microbiol Mol Biol Rev. 2008 Sep;72(3):555.

24.

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model.

Teusink B, Wiersma A, Molenaar D, Francke C, de Vos WM, Siezen RJ, Smid EJ.

J Biol Chem. 2006 Dec 29;281(52):40041-8. Epub 2006 Oct 24.

25.

Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis.

de Been M, Francke C, Moezelaar R, Abee T, Siezen RJ.

Microbiology. 2006 Oct;152(Pt 10):3035-48.

PMID:
17005984
26.

Accelerating the reconstruction of genome-scale metabolic networks.

Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

BMC Bioinformatics. 2006 Jun 13;7:296.

27.

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups.

Wels M, Francke C, Kerkhoven R, Kleerebezem M, Siezen RJ.

Nucleic Acids Res. 2006 Apr 13;34(7):1947-58. Print 2006. Erratum in: Nucleic Acids Res. 2006;34(9):2844.

28.

Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae.

Rossell S, van der Weijden CC, Lindenbergh A, van Tuijl A, Francke C, Bakker BM, Westerhoff HV.

Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2166-71. Epub 2006 Feb 7.

29.

In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments.

Teusink B, van Enckevort FH, Francke C, Wiersma A, Wegkamp A, Smid EJ, Siezen RJ.

Appl Environ Microbiol. 2005 Nov;71(11):7253-62.

30.

Reconstructing the metabolic network of a bacterium from its genome.

Francke C, Siezen RJ, Teusink B.

Trends Microbiol. 2005 Nov;13(11):550-8. Epub 2005 Sep 19. Review.

PMID:
16169729
31.

Why the phosphotransferase system of Escherichia coli escapes diffusion limitation.

Francke C, Postma PW, Westerhoff HV, Blom JG, Peletier MA.

Biophys J. 2003 Jul;85(1):612-22.

32.

Flux control of the bacterial phosphoenolpyruvate:glucose phosphotransferase system and the effect of diffusion.

Francke C, Westerhoff HV, Blom JG, Peletier MA.

Mol Biol Rep. 2002;29(1-2):21-6.

PMID:
12241059
34.

Excited states and trapping in reaction center complexes of the green sulfur bacterium Prosthecochloris aestuarii.

Neerken S, Permentier HP, Francke C, Aartsma TJ, Amesz J.

Biochemistry. 1998 Jul 28;37(30):10792-7.

PMID:
9692969
35.

Isolation and properties of photochemically active reaction center complexes from the green sulfur bacterium Prosthecochloris aestuarii.

Francke C, Permentier HP, Franken EM, Neerken S, Amesz J.

Biochemistry. 1997 Nov 18;36(46):14167-72.

PMID:
9369489
36.
37.

The size of the photosynthetic unit in purple bacteria.

Francke C, Amesz J.

Photosynth Res. 1995 Nov;46(1-2):347-52. doi: 10.1007/BF00020450.

PMID:
24301602
38.

Aggregation of 8,12-diethyl farnesyl bacteriochlorophyll c at low temperature.

Dudkowiak A, Francke C, Amesz J.

Photosynth Res. 1995 Jan;46(3):427-33. doi: 10.1007/BF00032297.

PMID:
24301637
39.

Chlorosomes of green sulfur bacteria: Pigment composition and energy transfer.

van Noort PI, Francke C, Schoumans N, Otte SC, Aartsma TJ, Amesz J.

Photosynth Res. 1994 Jul;41(1):193-203. doi: 10.1007/BF02184160.

PMID:
24310026
40.

Spectroscopic characterization of reaction centers of the (M)Y210W mutant of the photosynthetic bacterium Rhodobacter sphaeroides.

Shochat S, Arlt T, Francke C, Gast P, van Noort PI, Otte SC, Schelvis HP, Schmidt S, Vijgenboom E, Vrieze J, Zinth W, Hoff AJ.

Photosynth Res. 1994 Apr;40(1):55-66. doi: 10.1007/BF00019045.

PMID:
24311214
42.

Delirium in the elderly: acute organic mental disturbance.

Francke C, Lippmann S.

J Ky Med Assoc. 1988 Jan;86(1):29-34. Review. No abstract available.

PMID:
3278065
43.

[The nurse's role in the Nuclear Medicine Department].

Deleglise M, Francke C.

Soins. 1987 Oct;(505):20-2. French. No abstract available.

PMID:
3423864
44.
45.

Concomitant induction of a Balbiani ring and a giant secretory protein in Chironomus salivary glands.

Edström JE, Rydlander L, Francke C.

Chromosoma. 1980;81(1):115-24. No abstract available.

PMID:
7438885
46.

Testicular volume and function in adolescence after breech delivery.

Lips U, Francke C, Prader A.

Helv Paediatr Acta. 1979;34(5):437-42.

PMID:
528226
47.

[Transfer factor therapy. Preliminary report].

Francke C, Grob PJ.

Schweiz Med Wochenschr. 1974 Jan 26;104(4):146-7. German. No abstract available.

PMID:
4811475
48.

[Bilateral pheochromocytoma-medullary carcinoma of the thyroid gland with Cushing's syndrome].

Mathys S, Ziegler WH, Francke C.

Schweiz Med Wochenschr. 1972 Jun 10;102(23):798-803. German. No abstract available.

PMID:
5067812
49.

[Fathers of odontology at the General Meeting 1970. Chapin A. Harris 1806-1860, Horrace H. Hayden 1769-1844].

Francke CO.

Sven Tandlak Tidskr. 1971 May;64(5):340-1. Swedish. No abstract available.

PMID:
4950505
50.

Chromosomal aberrations in monoclonal gammopathies without clinical features of plasma cell myeloma or macroglobulinaemia.

Francke C, Robert WN.

Folia Med Neerl. 1970;13(1):2-9. No abstract available.

PMID:
4985048

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