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Items: 38

1.

Extreme Enhancement of Single-Molecule Fluorescence from Porphyrins Induced by Gold Nanodimer Antennas.

Francisco AP, Botequim D, Prazeres DMF, Serra VV, Costa SMB, Laia CAT, Paulo PMR.

J Phys Chem Lett. 2019 Apr 4;10(7):1542-1549. doi: 10.1021/acs.jpclett.9b00373. Epub 2019 Mar 20.

PMID:
30862164
2.

Cytotoxic Stilbenes and Derivatives as Promising Antimitotic Leads for Cancer Therapy.

Faustino C, Francisco AP, Isca VMS, Duarte N.

Curr Pharm Des. 2018;24(36):4270-4311. doi: 10.2174/1381612825666190111123959.

PMID:
30636588
3.

Prospective Assessment of Daily Patterns of Mood-Related Symptoms.

Pilz LK, Carissimi A, Francisco AP, Oliveira MAB, Slyepchenko A, Epifano K, Garay LLS, Fabris RC, Scop M, Streiner DL, Hidalgo MP, Frey BN.

Front Psychiatry. 2018 Aug 21;9:370. doi: 10.3389/fpsyt.2018.00370. eCollection 2018.

4.

Rhythmicity of Mood Symptoms in Individuals at Risk for Psychiatric Disorders.

Pilz LK, Carissimi A, Oliveira MAB, Francisco AP, Fabris RC, Medeiros MS, Scop M, Frey BN, Adan A, Hidalgo MP.

Sci Rep. 2018 Jul 30;8(1):11402. doi: 10.1038/s41598-018-29348-z.

5.

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.

Zhou Z, Alikhan NF, Sergeant MJ, Luhmann N, Vaz C, Francisco AP, Carriço JA, Achtman M.

Genome Res. 2018 Sep;28(9):1395-1404. doi: 10.1101/gr.232397.117. Epub 2018 Jul 26.

6.

Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients.

Monteiro M, Fonseca AC, Freitas AT, Pinho E Melo T, Francisco AP, Ferro JM, Oliveira AL.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):1953-1959. doi: 10.1109/TCBB.2018.2811471. Epub 2018 Mar 1.

PMID:
29994736
7.

Large-Scale Simulations of Bacterial Populations Over Complex Networks.

Teixeira AS, Monteiro PT, Carriço JA, Santos FC, Francisco AP.

J Comput Biol. 2018 Aug;25(8):850-861. doi: 10.1089/cmb.2018.0083. Epub 2018 Jul 9.

PMID:
29985650
8.

Fast phylogenetic inference from typing data.

Carriço JA, Crochemore M, Francisco AP, Pissis SP, Ribeiro-Gonçalves B, Vaz C.

Algorithms Mol Biol. 2018 Feb 15;13:4. doi: 10.1186/s13015-017-0119-7. eCollection 2018.

9.

The selective cytotoxicity of new triazene compounds to human melanoma cells.

Sousa A, Santos F, Gaspar MM, Calado S, Pereira JD, Mendes E, Francisco AP, Perry MJ.

Bioorg Med Chem. 2017 Aug 1;25(15):3900-3910. doi: 10.1016/j.bmc.2017.04.049. Epub 2017 May 31.

PMID:
28602669
10.

Commensal bacteria and essential amino acids control food choice behavior and reproduction.

Leitão-Gonçalves R, Carvalho-Santos Z, Francisco AP, Fioreze GT, Anjos M, Baltazar C, Elias AP, Itskov PM, Piper MDW, Ribeiro C.

PLoS Biol. 2017 Apr 25;15(4):e2000862. doi: 10.1371/journal.pbio.2000862. eCollection 2017 Apr.

11.

Measurement of polyurethane foam - air partition coefficients for semivolatile organic compounds as a function of temperature: Application to passive air sampler monitoring.

Francisco AP, Harner T, Eng A.

Chemosphere. 2017 May;174:638-642. doi: 10.1016/j.chemosphere.2017.01.135. Epub 2017 Jan 31.

12.

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.

Nascimento M, Sousa A, Ramirez M, Francisco AP, Carriço JA, Vaz C.

Bioinformatics. 2017 Jan 1;33(1):128-129. doi: 10.1093/bioinformatics/btw582. Epub 2016 Sep 6.

PMID:
27605102
13.

Oncogene Expression Modulation in Cancer Cell Lines by DNA G-Quadruplex-Interactive Small Molecules.

Francisco AP, Paulo A.

Curr Med Chem. 2017;24(42):4873-4904. doi: 10.2174/0929867323666160829145055. Review.

PMID:
27573064
14.

The Mood Rhythm Instrument: development and preliminary report.

de Souza CM, Carissimi A, Costa D, Francisco AP, Medeiros MS, Ilgenfritz CA, de Oliveira MA, Frey BN, Hidalgo MP.

Braz J Psychiatry. 2016 Apr-Jun;38(2):148-53. doi: 10.1590/1516-4446-2015-1763.

15.

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees.

Ribeiro-Gonçalves B, Francisco AP, Vaz C, Ramirez M, Carriço JA.

Nucleic Acids Res. 2016 Jul 8;44(W1):W246-51. doi: 10.1093/nar/gkw359. Epub 2016 Apr 29.

16.

Targeting KRAS Oncogene in Colon Cancer Cells with 7-Carboxylate Indolo[3,2-b]quinoline Tri-Alkylamine Derivatives.

Brito H, Martins AC, Lavrado J, Mendes E, Francisco AP, Santos SA, Ohnmacht SA, Kim NS, Rodrigues CM, Moreira R, Neidle S, Borralho PM, Paulo A.

PLoS One. 2015 May 29;10(5):e0126891. doi: 10.1371/journal.pone.0126891. eCollection 2015.

17.

Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis.

Teixeira AS, Monteiro PT, Carriço JA, Ramirez M, Francisco AP.

PLoS One. 2015 Mar 23;10(3):e0119315. doi: 10.1371/journal.pone.0119315. eCollection 2015.

18.

TypOn: the microbial typing ontology.

Vaz C, Francisco AP, Silva M, Jolley KA, Bray JE, Pouseele H, Rothganger J, Ramirez M, Carriço JA.

J Biomed Semantics. 2014 Oct 18;5(1):43. doi: 10.1186/2041-1480-5-43. eCollection 2014.

19.

Design and discovery of mushroom tyrosinase inhibitors and their therapeutic applications.

Mendes E, Perry Mde J, Francisco AP.

Expert Opin Drug Discov. 2014 May;9(5):533-54. doi: 10.1517/17460441.2014.907789. Epub 2014 Apr 7. Review.

PMID:
24708040
20.

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae.

Teixeira MC, Monteiro PT, Guerreiro JF, Gonçalves JP, Mira NP, dos Santos SC, Cabrito TR, Palma M, Costa C, Francisco AP, Madeira SC, Oliveira AL, Freitas AT, Sá-Correia I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D161-6. doi: 10.1093/nar/gkt1015. Epub 2013 Oct 28.

21.

Synthesis and evaluation of N-acylamino acids derivatives of triazenes. Activation by tyrosinase in human melanoma cell lines.

Monteiro AS, Almeida J, Cabral G, Severino P, Videira PA, Sousa A, Nunes R, Pereira JD, Francisco AP, Perry MJ, Mendes E.

Eur J Med Chem. 2013;70:1-9. doi: 10.1016/j.ejmech.2013.09.040. Epub 2013 Oct 2.

PMID:
24125877
22.

Assessing the molecular basis of transferable quinolone resistance in Escherichia coli and Salmonella spp. from food-producing animals and food products.

Jones-Dias D, Manageiro V, Francisco AP, Martins AP, Domingues G, Louro D, Ferreira E, Caniça M.

Vet Microbiol. 2013 Dec 27;167(3-4):523-31. doi: 10.1016/j.vetmic.2013.08.010. Epub 2013 Aug 22.

PMID:
24041769
23.

Targets, structures, and recent approaches in malignant melanoma chemotherapy.

Matos AM, Francisco AP.

ChemMedChem. 2013 Nov;8(11):1751-65. doi: 10.1002/cmdc.201300248. Epub 2013 Aug 16. Review.

PMID:
23956078
24.

The multifactorial nature of Alzheimer's disease for developing potential therapeutics.

Carreiras MC, Mendes E, Perry MJ, Francisco AP, Marco-Contelles J.

Curr Top Med Chem. 2013;13(15):1745-70. Review.

PMID:
23931435
25.

In vitro antimicrobial activity of royleanone derivatives against Gram-positive bacterial pathogens.

Rijo P, Duarte A, Francisco AP, Semedo-Lemsaddek T, Simões MF.

Phytother Res. 2014 Jan;28(1):76-81. doi: 10.1002/ptr.4961. Epub 2013 Mar 11.

PMID:
23494919
26.

Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores.

Gonçalves JP, Francisco AP, Moreau Y, Madeira SC.

PLoS One. 2012;7(11):e49634. doi: 10.1371/journal.pone.0049634. Epub 2012 Nov 19.

27.

Development of triazene prodrugs for ADEPT strategy: new insights into drug delivery system based on carboxypeptidase G2 activation.

Capucha V, Mendes E, Francisco AP, Perry MJ.

Bioorg Med Chem Lett. 2012 Nov 15;22(22):6903-8. doi: 10.1016/j.bmcl.2012.09.029. Epub 2012 Sep 18.

PMID:
23041157
28.

PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.

Francisco AP, Vaz C, Monteiro PT, Melo-Cristino J, Ramirez M, Carriço JA.

BMC Bioinformatics. 2012 May 8;13:87. doi: 10.1186/1471-2105-13-87.

29.

Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks.

Gonçalves JP, Aires RS, Francisco AP, Madeira SC.

PLoS One. 2012;7(5):e35977. doi: 10.1371/journal.pone.0035977. Epub 2012 May 1.

30.

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.

Vinga S, Carvalho AM, Francisco AP, Russo LM, Almeida JS.

Algorithms Mol Biol. 2012 May 2;7(1):10. doi: 10.1186/1748-7188-7-10.

31.

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.

Gonçalves JP, Francisco AP, Mira NP, Teixeira MC, Sá-Correia I, Oliveira AL, Madeira SC.

Bioinformatics. 2011 Nov 15;27(22):3149-57. doi: 10.1093/bioinformatics/btr546. Epub 2011 Sep 29.

PMID:
21965816
32.

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface.

Abdulrehman D, Monteiro PT, Teixeira MC, Mira NP, Lourenço AB, dos Santos SC, Cabrito TR, Francisco AP, Madeira SC, Aires RS, Oliveira AL, Sá-Correia I, Freitas AT.

Nucleic Acids Res. 2011 Jan;39(Database issue):D136-40. doi: 10.1093/nar/gkq964. Epub 2010 Oct 23.

33.

Antimycobacterial metabolites from Plectranthus: royleanone derivatives against Mycobacterium tuberculosis strains.

Rijo P, Simões MF, Francisco AP, Rojas R, Gilman RH, Vaisberg AJ, Rodríguez B, Moiteiro C.

Chem Biodivers. 2010 Apr;7(4):922-32. doi: 10.1002/cbdv.200900099.

PMID:
20397225
34.

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.

Francisco AP, Bugalho M, Ramirez M, Carriço JA.

BMC Bioinformatics. 2009 May 18;10:152. doi: 10.1186/1471-2105-10-152.

35.

Dopamine- and tyramine-based derivatives of triazenes: activation by tyrosinase and implications for prodrug design.

Perry MJ, Mendes E, Simplício AL, Coelho A, Soares RV, Iley J, Moreira R, Francisco AP.

Eur J Med Chem. 2009 Aug;44(8):3228-34. doi: 10.1016/j.ejmech.2009.03.025. Epub 2009 Mar 27.

PMID:
19386398
36.

Vertebral coplanar alignment: a standardized technique for three dimensional correction in scoliosis surgery: technical description and preliminary results in Lenke type 1 curves.

Vallespir GP, Flores JB, Trigueros IS, Sierra EH, Fernández PD, Olaverri JC, Alonso MG, Galea RR, Francisco AP, Rodríguez de Paz B, Carbonell PG, Thomas JV, López JL, Paulino JI, Pitarque CB, García OR.

Spine (Phila Pa 1976). 2008 Jun 15;33(14):1588-97. doi: 10.1097/BRS.0b013e3181788704.

PMID:
18552675
37.

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.

Monteiro PT, Mendes ND, Teixeira MC, d'Orey S, Tenreiro S, Mira NP, Pais H, Francisco AP, Carvalho AM, Lourenço AB, Sá-Correia I, Oliveira AL, Freitas AT.

Nucleic Acids Res. 2008 Jan;36(Database issue):D132-6. Epub 2007 Nov 21.

38.

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