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Combined in situ Physical and ex-situ Biochemical Approaches to Investigate in vitro Deconstruction of Destarched Wheat Bran by Enzymes Cocktail Used in Animal Nutrition.

Deshors M, Guais O, Neugnot-Roux V, Cameleyre X, Fillaudeau L, Francois JM.

Front Bioeng Biotechnol. 2019 Jun 26;7:158. doi: 10.3389/fbioe.2019.00158. eCollection 2019.


Gene Expression Noise Produces Cell-to-Cell Heterogeneity in Eukaryotic Homologous Recombination Rate.

Liu J, François JM, Capp JP.

Front Genet. 2019 May 21;10:475. doi: 10.3389/fgene.2019.00475. eCollection 2019.


Withdrawal: Yeast tolerance to various stresses relies on the trehalose-6P synthase (Tps1) protein, not on trehalose.

Petitjean M, Teste MA, François JM, Parrou JL.

J Biol Chem. 2019 Apr 12;294(15):5812. doi: 10.1074/jbc.W119.008564. No abstract available.


Integrated pH Measurement during Reaction Monitoring with Dual-Reception 1H-31P NMR Spectroscopy.

Cox N, Kuemmerle R, Millard P, Cahoreau E, François JM, Parrou JL, Lippens G.

Anal Chem. 2019 Mar 19;91(6):3959-3963. doi: 10.1021/acs.analchem.8b05147. Epub 2019 Feb 27.


Carbon sources and XlnR-dependent transcriptional landscape of CAZymes in the industrial fungus Talaromyces versatilis: when exception seems to be the rule.

Llanos A, Déjean S, Neugnot-Roux V, François JM, Parrou JL.

Microb Cell Fact. 2019 Jan 28;18(1):14. doi: 10.1186/s12934-019-1062-8.


Polyunsaturated fatty acid metabolites: biosynthesis in Leishmania and role in parasite/host interaction.

Paloque L, Perez-Berezo T, Abot A, Dalloux-Chioccioli J, Bourgeade-Delmas S, Le Faouder P, Pujo J, Teste MA, François JM, Schebb NH, Mainka M, Rolland C, Blanpied C, Dietrich G, Bertrand-Michel J, Deraison C, Valentin A, Cenac N.

J Lipid Res. 2019 Mar;60(3):636-647. doi: 10.1194/jlr.M091736. Epub 2019 Jan 9.


Innovative DendrisChips® Technology for a Syndromic Approach of In Vitro Diagnosis: Application to the Respiratory Infectious Diseases.

Senescau A, Kempowsky T, Bernard E, Messier S, Besse P, Fabre R, François JM.

Diagnostics (Basel). 2018 Nov 11;8(4). pii: E77. doi: 10.3390/diagnostics8040077.


Rational engineering of a malate dehydrogenase for microbial production of 2,4-dihydroxybutyric acid via homoserine pathway.

Frazão CJR, Topham CM, Malbert Y, François JM, Walther T.

Biochem J. 2018 Dec 12;475(23):3887-3901. doi: 10.1042/BCJ20180765.


Trehalose-6-phosphate promotes fermentation and glucose repression in Saccharomyces cerevisiae.

Vicente RL, Spina L, Gómez JPL, Dejean S, Parrou JL, François JM.

Microb Cell. 2018 Oct 1;5(10):444-459. doi: 10.15698/mic2018.10.651.


A GRX1 Promoter Variant Confers Constitutive Noisy Bimodal Expression That Increases Oxidative Stress Resistance in Yeast.

Liu J, Lestrade D, Arabaciyan S, Cescut J, François JM, Capp JP.

Front Microbiol. 2018 Sep 19;9:2158. doi: 10.3389/fmicb.2018.02158. eCollection 2018.


Development of a Metabolite Sensor for High-Throughput Detection of Aldehydes in Escherichia Coli.

Frazão CR, Maton V, François JM, Walther T.

Front Bioeng Biotechnol. 2018 Aug 23;6:118. doi: 10.3389/fbioe.2018.00118. eCollection 2018.


Engineering of Escherichia coli for Krebs cycle-dependent production of malic acid.

Trichez D, Auriol C, Baylac A, Irague R, Dressaire C, Carnicer-Heras M, Heux S, François JM, Walther T.

Microb Cell Fact. 2018 Jul 16;17(1):113. doi: 10.1186/s12934-018-0959-y.


Bimodality of gene expression from yeast promoter can be instigated by DNA context, inducing conditions and strain background.

Liu J, Arabaciyan S, François JM, Capp JP.

FEMS Yeast Res. 2018 Jun 1;18(4). doi: 10.1093/femsyr/foy047.


A generic HTS assay for kinase screening: Validation for the isolation of an engineered malate kinase.

Irague R, Topham CM, Martineau N, Baylac A, Auriol C, Walther T, François JM, André I, Remaud-Siméon M.

PLoS One. 2018 Feb 20;13(2):e0193036. doi: 10.1371/journal.pone.0193036. eCollection 2018.


Production of Aspergillus niger biomass on sugarcane distillery wastewater: physiological aspects and potential for biodiesel production.

Chuppa-Tostain G, Hoarau J, Watson M, Adelard L, Shum Cheong Sing A, Caro Y, Grondin I, Bourven I, Francois JM, Girbal-Neuhauser E, Petit T.

Fungal Biol Biotechnol. 2018 Jan 16;5:1. doi: 10.1186/s40694-018-0045-6. eCollection 2018.


Construction of a synthetic metabolic pathway for the production of 2,4-dihydroxybutyric acid from homoserine.

Walther T, Calvayrac F, Malbert Y, Alkim C, Dressaire C, Cordier H, François JM.

Metab Eng. 2018 Jan;45:237-245. doi: 10.1016/j.ymben.2017.12.005. Epub 2017 Dec 14.


Integration of Biochemical, Biophysical and Transcriptomics Data for Investigating the Structural and Nanomechanical Properties of the Yeast Cell Wall.

Schiavone M, Déjean S, Sieczkowski N, Castex M, Dague E, François JM.

Front Microbiol. 2017 Sep 27;8:1806. doi: 10.3389/fmicb.2017.01806. eCollection 2017.


Deciphering the Origin, Evolution, and Physiological Function of the Subtelomeric Aryl-Alcohol Dehydrogenase Gene Family in the Yeast Saccharomyces cerevisiae.

Yang DD, de Billerbeck GM, Zhang JJ, Rosenzweig F, Francois JM.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01553-17. doi: 10.1128/AEM.01553-17. Print 2018 Jan 1.


Flavour production by Saprochaete and Geotrichum yeasts and their close relatives.

Grondin E, Shum Cheong Sing A, James S, Nueno-Palop C, François JM, Petit T.

Food Chem. 2017 Dec 15;237:677-684. doi: 10.1016/j.foodchem.2017.06.009. Epub 2017 Jun 3.


Construction of a synthetic metabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid.

Walther T, Topham CM, Irague R, Auriol C, Baylac A, Cordier H, Dressaire C, Lozano-Huguet L, Tarrat N, Martineau N, Stodel M, Malbert Y, Maestracci M, Huet R, André I, Remaud-Siméon M, François JM.

Nat Commun. 2017 Jun 20;8:15828. doi: 10.1038/ncomms15828.


In vivo evolutionary engineering for ethanol-tolerance of Saccharomyces cerevisiae haploid cells triggers diploidization.

Turanlı-Yıldız B, Benbadis L, Alkım C, Sezgin T, Akşit A, Gökçe A, Öztürk Y, Baykal AT, Çakar ZP, François JM.

J Biosci Bioeng. 2017 Sep;124(3):309-318. doi: 10.1016/j.jbiosc.2017.04.012. Epub 2017 May 25.


Automated and Multiplexed Soft Lithography for the Production of Low-Density DNA Microarrays.

Fredonnet J, Foncy J, Cau JC, Séverac C, François JM, Trévisiol E.

Microarrays (Basel). 2016 Sep 26;5(4). pii: E25. doi: 10.3390/microarrays5040025.


The synthetic xylulose-1 phosphate pathway increases production of glycolic acid from xylose-rich sugar mixtures.

Alkim C, Trichez D, Cam Y, Spina L, François JM, Walther T.

Biotechnol Biofuels. 2016 Sep 20;9:201. doi: 10.1186/s13068-016-0610-2. eCollection 2016.


A new function for the yeast trehalose-6P synthase (Tps1) protein, as key pro-survival factor during growth, chronological ageing, and apoptotic stress.

Petitjean M, Teste MA, Léger-Silvestre I, François JM, Parrou JL.

Mech Ageing Dev. 2017 Jan;161(Pt B):234-246. doi: 10.1016/j.mad.2016.07.011. Epub 2016 Aug 6.


Microbial production of propanol.

Walther T, François JM.

Biotechnol Adv. 2016 Sep-Oct;34(5):984-996. doi: 10.1016/j.biotechadv.2016.05.011. Epub 2016 Jun 1. Review.


Evidence for a Role for the Plasma Membrane in the Nanomechanical Properties of the Cell Wall as Revealed by an Atomic Force Microscopy Study of the Response of Saccharomyces cerevisiae to Ethanol Stress.

Schiavone M, Formosa-Dague C, Elsztein C, Teste MA, Martin-Yken H, De Morais MA Jr, Dague E, François JM.

Appl Environ Microbiol. 2016 Jul 15;82(15):4789-4801. doi: 10.1128/AEM.01213-16. Print 2016 Aug 1.


Knr4: a disordered hub protein at the heart of fungal cell wall signalling.

Martin-Yken H, François JM, Zerbib D.

Cell Microbiol. 2016 Sep;18(9):1217-27. doi: 10.1111/cmi.12618. Epub 2016 Jun 28. Review.


Use of noise in gene expression as an experimental parameter to test phenotypic effects.

Liu J, François JM, Capp JP.

Yeast. 2016 Jun;33(6):209-16. doi: 10.1002/yea.3152. Epub 2016 Apr 19. Review.


Cell Surface Interference with Plasma Membrane and Transport Processes in Yeasts.

Francois JM.

Adv Exp Med Biol. 2016;892:11-31. doi: 10.1007/978-3-319-25304-6_2. Review.


Editorial - Synthetic Biology: Engineering Complexity and Refactoring Cell Capabilities.

Ceroni F, Carbonell P, François JM, Haynes KA.

Front Bioeng Biotechnol. 2015 Aug 21;3:120. doi: 10.3389/fbioe.2015.00120. eCollection 2015. No abstract available.


Optimization of ethylene glycol production from (D)-xylose via a synthetic pathway implemented in Escherichia coli.

Alkim C, Cam Y, Trichez D, Auriol C, Spina L, Vax A, Bartolo F, Besse P, François JM, Walther T.

Microb Cell Fact. 2015 Sep 4;14:127. doi: 10.1186/s12934-015-0312-7.


Crystallographic studies of the structured core domain of Knr4 from Saccharomyces cerevisiae.

Julien S, Tondl P, Durand F, Dagkessamanskaia A, van Tilbeurgh H, François JM, Mourey L, Zerbib D, Martin-Yken H, Maveyraud L.

Acta Crystallogr F Struct Biol Commun. 2015 Sep;71(Pt 9):1120-4. doi: 10.1107/S2053230X15012522. Epub 2015 Aug 25.


Engineering of a Synthetic Metabolic Pathway for the Assimilation of (d)-Xylose into Value-Added Chemicals.

Cam Y, Alkim C, Trichez D, Trebosc V, Vax A, Bartolo F, Besse P, François JM, Walther T.

ACS Synth Biol. 2016 Jul 15;5(7):607-18. doi: 10.1021/acssynbio.5b00103. Epub 2015 Jul 24.


Mapping HA-tagged protein at the surface of living cells by atomic force microscopy.

Formosa C, Lachaize V, Galés C, Rols MP, Martin-Yken H, François JM, Duval RE, Dague E.

J Mol Recognit. 2015 Jan;28(1):1-9. doi: 10.1002/jmr.2407.


Yeast Tolerance to Various Stresses Relies on the Trehalose-6P Synthase (Tps1) Protein, Not on Trehalose.

Petitjean M, Teste MA, François JM, Parrou JL.

J Biol Chem. 2015 Jun 26;290(26):16177-90. doi: 10.1074/jbc.M115.653899. Epub 2015 May 1. Retraction in: J Biol Chem. 2019 Apr 12;294(15):5812.


Fuzzy logic selection as a new reliable tool to identify molecular grade signatures in breast cancer--the INNODIAG study.

Kempowsky-Hamon T, Valle C, Lacroix-Triki M, Hedjazi L, Trouilh L, Lamarre S, Labourdette D, Roger L, Mhamdi L, Dalenc F, Filleron T, Favre G, François JM, Le Lann MV, Anton-Leberre V.

BMC Med Genomics. 2015 Feb 7;8:3. doi: 10.1186/s12920-015-0077-1.


A comparative study on the potential of epiphytic yeasts isolated from tropical fruits to produce flavoring compounds.

Grondin E, Shum Cheong Sing A, Caro Y, Raherimandimby M, Randrianierenana AL, James S, Nueno-Palop C, François JM, Petit T.

Int J Food Microbiol. 2015 Jun 16;203:101-8. doi: 10.1016/j.ijfoodmicro.2015.02.032. Epub 2015 Mar 3.


Natural yeast promoter variants reveal epistasis in the generation of transcriptional-mediated noise and its potential benefit in stressful conditions.

Liu J, Martin-Yken H, Bigey F, Dequin S, François JM, Capp JP.

Genome Biol Evol. 2015 Mar 11;7(4):969-84. doi: 10.1093/gbe/evv047.


Tracking the best reference genes for RT-qPCR data normalization in filamentous fungi.

Llanos A, François JM, Parrou JL.

BMC Genomics. 2015 Feb 14;16:71. doi: 10.1186/s12864-015-1224-y.


A Ralstonia solanacearum type III effector directs the production of the plant signal metabolite trehalose-6-phosphate.

Poueymiro M, Cazalé AC, François JM, Parrou JL, Peeters N, Genin S.

MBio. 2014 Dec 23;5(6). pii: e02065-14. doi: 10.1128/mBio.02065-14.


Physiological and biochemical characteristics of the ethyl tiglate production pathway in the yeast Saprochaete suaveolens.

Grondin E, Shum Cheong Sing A, Caro Y, de Billerbeck GM, François JM, Petit T.

Yeast. 2015 Jan;32(1):57-66. doi: 10.1002/yea.3057. Epub 2014 Dec 17.


A combined chemical and enzymatic method to determine quantitatively the polysaccharide components in the cell wall of yeasts.

Schiavone M, Vax A, Formosa C, Martin-Yken H, Dague E, François JM.

FEMS Yeast Res. 2014 Sep;14(6):933-47. doi: 10.1111/1567-1364.12182. Epub 2014 Jul 28.


Similarities and differences in the biochemical and enzymological properties of the four isomaltases from Saccharomyces cerevisiae.

Deng X, Petitjean M, Teste MA, Kooli W, Tranier S, François JM, Parrou JL.

FEBS Open Bio. 2014 Feb 15;4:200-12. doi: 10.1016/j.fob.2014.02.004. eCollection 2014.


Preparation of tethered-lipid bilayers on gold surfaces for the incorporation of integral membrane proteins synthesized by cell-free expression.

Coutable A, Thibault C, Chalmeau J, François JM, Vieu C, Noireaux V, Trévisiol E.

Langmuir. 2014 Mar 25;30(11):3132-41. doi: 10.1021/la5004758. Epub 2014 Mar 11.


Uncovering by atomic force microscopy of an original circular structure at the yeast cell surface in response to heat shock.

Pillet F, Lemonier S, Schiavone M, Formosa C, Martin-Yken H, Francois JM, Dague E.

BMC Biol. 2014 Jan 27;12:6. doi: 10.1186/1741-7007-12-6.


Prevalence, identification by a DNA microarray-based assay of human and food isolates Listeria spp. from Tunisia.

Hmaïed F, Helel S, Le Berre V, François JM, Leclercq A, Lecuit M, Smaoui H, Kechrid A, Boudabous A, Barkallah I.

Pathol Biol (Paris). 2014 Feb;62(1):24-9. doi: 10.1016/j.patbio.2013.10.005. Epub 2014 Jan 23.


Use of atomic force microscopy (AFM) to explore cell wall properties and response to stress in the yeast Saccharomyces cerevisiae.

Francois JM, Formosa C, Schiavone M, Pillet F, Martin-Yken H, Dague E.

Curr Genet. 2013 Nov;59(4):187-96. doi: 10.1007/s00294-013-0411-0. Epub 2013 Sep 27. Review.


Molecular and biochemical characterization of three GH62 α-l-arabinofuranosidases from the soil deuteromycete Penicillium funiculosum.

De La Mare M, Guais O, Bonnin E, Weber J, Francois JM.

Enzyme Microb Technol. 2013 Oct 10;53(5):351-8. doi: 10.1016/j.enzmictec.2013.07.008. Epub 2013 Aug 13.


Mechanisms other than activation of the iron regulon account for the hyper-resistance to cobalt of a Saccharomyces cerevisiae strain obtained by evolutionary engineering.

Alkim C, Benbadis L, Yilmaz U, Cakar ZP, François JM.

Metallomics. 2013 Aug;5(8):1043-60. doi: 10.1039/c3mt00107e.


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