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Items: 1 to 50 of 61

1.

Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains.

Pena-Gonzalez A, Rodriguez-R LM, Marston CK, Gee JE, Gulvik CA, Kolton CB, Saile E, Frace M, Hoffmaster AR, Konstantinidis KT.

mSystems. 2018 Aug 14;3(4). pii: e00065-18. doi: 10.1128/mSystems.00065-18. eCollection 2018 Jul-Aug.

2.

Detection of minority drug resistant mutations in Malawian HIV-1 subtype C-positive patients initiating and on first-line antiretroviral therapy.

Zhou Z, Tang K, Zhang G, Wadonda-Kabondo N, Moyo K, Rowe LA, DeVos JR, Wagar N, Zheng DP, Guo H, Nkengasong J, Frace M, Sammons S, Yang C.

Afr J Lab Med. 2018 May 30;7(1):708. doi: 10.4102/ajlm.v7i1.708. eCollection 2018.

3.

Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA.

Hao L, Holden MTG, Wang X, Andrew L, Wellnitz S, Hu F, Whaley M, Sammons S, Knipe K, Frace M, McNamara LA, Liberator P, Anderson AS.

Microb Genom. 2018 Apr;4(4). doi: 10.1099/mgen.0.000155. Epub 2018 Apr 4.

4.

Draft Genome Sequence of Bacillus cereus LA2007, a Human-Pathogenic Isolate Harboring Anthrax-Like Plasmids.

Pena-Gonzalez A, Marston CK, Rodriguez-R LM, Kolton CB, Garcia-Diaz J, Theppote A, Frace M, Konstantinidis KT, Hoffmaster AR.

Genome Announc. 2017 Apr 20;5(16). pii: e00181-17. doi: 10.1128/genomeA.00181-17.

5.

Genome Sequences of Two Brucella suis Strains Isolated from the Same Patient, 8 Years Apart.

Viana MV, Wattam AR, Govil Batra D, Boisvert S, Brettin TS, Frace M, Xia F, Azevedo V, Tiller R, Hoffmaster AR.

Genome Announc. 2017 Mar 2;5(9). pii: e01687-16. doi: 10.1128/genomeA.01687-16.

6.

Genome Sequences of Three Brucella canis Strains Isolated from Humans and a Dog.

Viana MV, Wattam AR, Govil Batra D, Boisvert S, Brettin TS, Frace M, Xia F, Azevedo V, Tiller R, Hoffmaster AR.

Genome Announc. 2017 Feb 23;5(8). pii: e01688-16. doi: 10.1128/genomeA.01688-16.

7.

Serro 2 Virus Highlights the Fundamental Genomic and Biological Features of a Natural Vaccinia Virus Infecting Humans.

Trindade GS, Emerson GL, Sammons S, Frace M, Govil D, Fernandes Mota BE, Abrahão JS, de Assis FL, Olsen-Rasmussen M, Goldsmith CS, Li Y, Carroll D, Guimarães da Fonseca F, Kroon E, Damon IK.

Viruses. 2016 Dec 10;8(12). pii: E328.

8.

Evolution of mitosome metabolism and invasion-related proteins in Cryptosporidium.

Liu S, Roellig DM, Guo Y, Li N, Frace MA, Tang K, Zhang L, Feng Y, Xiao L.

BMC Genomics. 2016 Dec 8;17(1):1006.

9.

Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).

Bugrysheva JV, Cherney B, Sue D, Conley AB, Rowe LA, Knipe KM, Frace MA, Loparev VN, Avila JR, Anderson K, Hodge DR, Pillai SP, Weigel LM.

Genome Announc. 2016 Nov 17;4(6). pii: e01294-16. doi: 10.1128/genomeA.01294-16.

10.

Dynamics of genome change among Legionella species.

Joseph SJ, Cox D, Wolff B, Morrison SS, Kozak-Muiznieks NA, Frace M, Didelot X, Castillo-Ramirez S, Winchell J, Read TD, Dean D.

Sci Rep. 2016 Sep 16;6:33442. doi: 10.1038/srep33442.

11.

The genomes of three North American orthopoxviruses.

Smithson C, Tang N, Sammons S, Frace M, Batra D, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Feb;53(1):21-34. doi: 10.1007/s11262-016-1388-9. Epub 2016 Sep 9.

PMID:
27613417
12.

Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.

Whitmer SL, Albariño C, Shepard SS, Dudas G, Sheth M, Brown SC, Cannon D, Erickson BR, Gibbons A, Schuh A, Sealy T, Ervin E, Frace M, Uyeki TM, Nichol ST, Ströher U.

J Infect Dis. 2016 Oct 15;214(suppl 3):S333-S341. Epub 2016 Aug 11.

PMID:
27521366
13.

Spike gene deletion quasispecies in serum of patient with acute MERS-CoV infection.

Lu X, Rowe LA, Frace M, Stevens J, Abedi GR, Elnile O, Banassir T, Al-Masri M, Watson JT, Assiri A, Erdman DD.

J Med Virol. 2017 Mar;89(3):542-545. doi: 10.1002/jmv.24652. Epub 2016 Aug 22.

PMID:
27486688
14.

Multilocus Sequence Typing Tool for Cyclospora cayetanensis.

Guo Y, Roellig DM, Li N, Tang K, Frace M, Ortega Y, Arrowood MJ, Feng Y, Qvarnstrom Y, Wang L, Moss DM, Zhang L, Xiao L.

Emerg Infect Dis. 2016 Aug;22(8):1464-7. doi: 10.3201/eid2208.150696.

15.

Genome Sequence of Vaccinia virus Strain Lister-Butantan, a Lister Vaccine Variant Used during a Smallpox Eradication Campaign in Brazil.

Assis F, Trindade G, Drumond B, Frace M, Sammons S, Emerson G, Li Y, Carroll D, Batra D, Abrahão J, Kroon E.

Genome Announc. 2016 Jun 23;4(3). pii: e00536-16. doi: 10.1128/genomeA.00536-16.

16.

Three Genome Sequences of Legionella pneumophila subsp. pascullei Associated with Colonization of a Health Care Facility.

Kozak-Muiznieks NA, Morrison SS, Sammons S, Rowe LA, Sheth M, Frace M, Lucas CE, Loparev VN, Raphael BH, Winchell JM.

Genome Announc. 2016 May 5;4(3). pii: e00335-16. doi: 10.1128/genomeA.00335-16.

17.

Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens.

Liu S, Wang L, Zheng H, Xu Z, Roellig DM, Li N, Frace MA, Tang K, Arrowood MJ, Moss DM, Zhang L, Feng Y, Xiao L.

BMC Genomics. 2016 Apr 30;17:316. doi: 10.1186/s12864-016-2632-3.

18.

Identification and Characterization of Microsatellite Markers Derived from the Whole Genome Analysis of Taenia solium.

Pajuelo MJ, Eguiluz M, Dahlstrom E, Requena D, Guzmán F, Ramirez M, Sheen P, Frace M, Sammons S, Cama V, Anzick S, Bruno D, Mahanty S, Wilkins P, Nash T, Gonzalez A, García HH, Gilman RH, Porcella S, Zimic M; Cysticercosis Working Group in Peru.

PLoS Negl Trop Dis. 2015 Dec 23;9(12):e0004316. doi: 10.1371/journal.pntd.0004316. eCollection 2015 Dec.

19.

Determination of Evolutionary Relationships of Outbreak-Associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b by Whole-Genome Sequencing.

Bergholz TM, den Bakker HC, Katz LS, Silk BJ, Jackson KA, Kucerova Z, Joseph LA, Turnsek M, Gladney LM, Halpin JL, Xavier K, Gossack J, Ward TJ, Frace M, Tarr CL.

Appl Environ Microbiol. 2015 Nov 20;82(3):928-38. doi: 10.1128/AEM.02440-15. Print 2016 Feb 1.

20.

Malignant Transformation of Hymenolepis nana in a Human Host.

Muehlenbachs A, Bhatnagar J, Agudelo CA, Hidron A, Eberhard ML, Mathison BA, Frace MA, Ito A, Metcalfe MG, Rollin DC, Visvesvara GS, Pham CD, Jones TL, Greer PW, Vélez Hoyos A, Olson PD, Diazgranados LR, Zaki SR.

N Engl J Med. 2015 Nov 5;373(19):1845-52. doi: 10.1056/NEJMoa1505892.

21.

Genetic similarities between Cyclospora cayetanensis and cecum-infecting avian Eimeria spp. in apicoplast and mitochondrial genomes.

Tang K, Guo Y, Zhang L, Rowe LA, Roellig DM, Frace MA, Li N, Liu S, Feng Y, Xiao L.

Parasit Vectors. 2015 Jul 8;8:358. doi: 10.1186/s13071-015-0966-3.

22.

Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum.

Guo Y, Tang K, Rowe LA, Li N, Roellig DM, Knipe K, Frace M, Yang C, Feng Y, Xiao L.

BMC Genomics. 2015 Apr 18;16:320. doi: 10.1186/s12864-015-1517-1.

23.

Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes.

Wolff BJ, Morrison SS, Pesti D, Ganakammal SR, Srinivasamoorthy G, Changayil S, Weil MR, MacCannell D, Rowe L, Frace M, Ritchie BW, Dean D, Winchell JM.

Microbiology. 2015 Jul;161(7):1378-91. doi: 10.1099/mic.0.000097. Epub 2015 Apr 17.

24.

Insights into the environmental reservoir of pathogenic Vibrio parahaemolyticus using comparative genomics.

Hazen TH, Lafon PC, Garrett NM, Lowe TM, Silberger DJ, Rowe LA, Frace M, Parsons MB, Bopp CA, Rasko DA, Sobecky PA.

Front Microbiol. 2015 Mar 24;6:204. doi: 10.3389/fmicb.2015.00204. eCollection 2015.

25.

Draft Genome Sequence of Legionella pneumophila D-5864, a Serogroup 6 Strain.

Morrison SS, Kozak-Muiznieks NA, Sammons S, Rowe LA, Frace M, Winchell JM.

Genome Announc. 2015 Jan 8;3(1). pii: e01379-14. doi: 10.1128/genomeA.01379-14.

26.

Isolation and enrichment of Cryptosporidium DNA and verification of DNA purity for whole-genome sequencing.

Guo Y, Li N, Lysén C, Frace M, Tang K, Sammons S, Roellig DM, Feng Y, Xiao L.

J Clin Microbiol. 2015 Feb;53(2):641-7. doi: 10.1128/JCM.02962-14. Epub 2014 Dec 17.

27.

Seven Strains of Enterovirus D68 Detected in the United States during the 2014 Severe Respiratory Disease Outbreak.

Brown BA, Nix WA, Sheth M, Frace M, Oberste MS.

Genome Announc. 2014 Nov 20;2(6). pii: e01201-14. doi: 10.1128/genomeA.01201-14.

28.

In Vitro selection of Neisseria gonorrhoeae mutants with elevated MIC values and increased resistance to cephalosporins.

Johnson SR, Grad Y, Ganakammal SR, Burroughs M, Frace M, Lipsitch M, Weil R, Trees D.

Antimicrob Agents Chemother. 2014 Nov;58(11):6986-9. doi: 10.1128/AAC.03082-14. Epub 2014 Sep 8.

29.

vanG element insertions within a conserved chromosomal site conferring vancomycin resistance to Streptococcus agalactiae and Streptococcus anginosus.

Srinivasan V, Metcalf BJ, Knipe KM, Ouattara M, McGee L, Shewmaker PL, Glennen A, Nichols M, Harris C, Brimmage M, Ostrowsky B, Park CJ, Schrag SJ, Frace MA, Sammons SA, Beall B.

MBio. 2014 Jul 22;5(4):e01386-14. doi: 10.1128/mBio.01386-14.

30.

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.

Lindsey RL, Trees E, Sammons S, Loparev V, Frace M, Strockbine N, Sabol AL, Sowers E, Stripling D, Martin H, Knipe K, Rowe L, Gerner-Smidt P.

Genome Announc. 2014 Jul 10;2(4). pii: e00501-14. doi: 10.1128/genomeA.00501-14.

31.

Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections.

Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, Lockhart SR, Changayil S, Weil MR, MacCannell DR, Brandt ME, Engelthaler DM.

J Clin Microbiol. 2014 Sep;52(9):3216-22. doi: 10.1128/JCM.00936-14. Epub 2014 Jun 20.

32.

Novel paramyxovirus associated with severe acute febrile disease, South Sudan and Uganda, 2012.

Albariño CG, Foltzer M, Towner JS, Rowe LA, Campbell S, Jaramillo CM, Bird BH, Reeder DM, Vodzak ME, Rota P, Metcalfe MG, Spiropoulou CF, Knust B, Vincent JP, Frace MA, Nichol ST, Rollin PE, Ströher U.

Emerg Infect Dis. 2014 Feb;20(2):211-6. doi: 10.3201/eid2002.131620.

33.

Prevalence of sequence types among clinical and environmental isolates of Legionella pneumophila serogroup 1 in the United States from 1982 to 2012.

Kozak-Muiznieks NA, Lucas CE, Brown E, Pondo T, Taylor TH Jr, Frace M, Miskowski D, Winchell JM.

J Clin Microbiol. 2014 Jan;52(1):201-11. doi: 10.1128/JCM.01973-13. Epub 2013 Nov 6.

34.

High throughput sequencing of the Angiostrongylus cantonensis genome: a parasite spreading worldwide.

Morassutti AL, Perelygin A, DE Carvalho MO, Lemos LN, Pinto PM, Frace M, Wilkins PP, Graeff-Teixeira C, DA Silva AJ.

Parasitology. 2013 Sep;140(10):1304-9. doi: 10.1017/S0031182013000656. Epub 2013 Jul 17.

PMID:
23863082
35.

Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti.

Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, Turnsek MA, Guo Y, Wang S, Paxinos EE, Orata F, Gladney LM, Stroika S, Folster JP, Rowe L, Freeman MM, Knox N, Frace M, Boncy J, Graham M, Hammer BK, Boucher Y, Bashir A, Hanage WP, Van Domselaar G, Tarr CL.

MBio. 2013 Jul 2;4(4). pii: e00398-13. doi: 10.1128/mBio.00398-13.

36.

Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558).

Tatti KM, Loparev VN, Ranganathanganakammal S, Changayil S, Frace M, Weil MR, Sammons S, Maccannell D, Mayer LW, Tondella ML.

Genome Announc. 2013 Mar 21;1(2):e0005613. doi: 10.1128/genomeA.00056-13.

37.

Phylogenetic and ecologic perspectives of a monkeypox outbreak, southern Sudan, 2005.

Nakazawa Y, Emerson GL, Carroll DS, Zhao H, Li Y, Reynolds MG, Karem KL, Olson VA, Lash RR, Davidson WB, Smith SK, Levine RS, Regnery RL, Sammons SA, Frace MA, Mutasim EM, Karsani ME, Muntasir MO, Babiker AA, Opoka L, Chowdhary V, Damon IK.

Emerg Infect Dis. 2013 Feb;19(2):237-45. doi: 10.3201/eid1902.121220.

38.

Novel epidemic clones of Listeria monocytogenes, United States, 2011.

Lomonaco S, Verghese B, Gerner-Smidt P, Tarr C, Gladney L, Joseph L, Katz L, Turnsek M, Frace M, Chen Y, Brown E, Meinersmann R, Berrang M, Knabel S.

Emerg Infect Dis. 2013 Jan;19(1):147-50. doi: 10.3201/eid1901.121167.

39.

Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway.

Wattam AR, Inzana TJ, Williams KP, Mane SP, Shukla M, Almeida NF, Dickerman AW, Mason S, Moriyón I, O'Callaghan D, Whatmore AM, Sobral BW, Tiller RV, Hoffmaster AR, Frace MA, De Castro C, Molinaro A, Boyle SM, De BK, Setubal JC.

MBio. 2012 Nov 6;3(5):e00246-11. doi: 10.1128/mBio.00388-12.

40.

Analysis of a unique Clostridium botulinum strain from the Southern hemisphere producing a novel type E botulinum neurotoxin subtype.

Raphael BH, Lautenschlager M, Kalb SR, de Jong LI, Frace M, Lúquez C, Barr JR, Fernández RA, Maslanka SE.

BMC Microbiol. 2012 Oct 31;12:245. doi: 10.1186/1471-2180-12-245.

41.

Comparative genomics of early-diverging Brucella strains reveals a novel lipopolysaccharide biosynthesis pathway.

Wattam AR, Inzana TJ, Williams KP, Mane SP, Shukla M, Almeida NF, Dickerman AW, Mason S, Moriyón I, O'Callaghan D, Whatmore AM, Sobral BW, Tiller RV, Hoffmaster AR, Frace MA, De Castro C, Molinaro A, Boyle SM, De BK, Setubal JC.

MBio. 2012 Aug 28;3(5):e00246-12. doi: 10.1128/mBio.00246-12. Print 2012. Erratum in: MBio. 2012 Nov-Dec;3(6):e00388-12.

42.

Progressive vaccinia: case description and laboratory-guided therapy with vaccinia immune globulin, ST-246, and CMX001.

Lederman ER, Davidson W, Groff HL, Smith SK, Warkentien T, Li Y, Wilkins KA, Karem KL, Akondy RS, Ahmed R, Frace M, Shieh WJ, Zaki S, Hruby DE, Painter WP, Bergman KL, Cohen JI, Damon IK.

J Infect Dis. 2012 Nov;206(9):1372-85. doi: 10.1093/infdis/jis510. Epub 2012 Aug 16.

43.

Genomic basis of a polyagglutinating isolate of Neisseria meningitidis.

Rishishwar L, Katz LS, Sharma NV, Rowe L, Frace M, Dolan Thomas J, Harcourt BH, Mayer LW, Jordan IK.

J Bacteriol. 2012 Oct;194(20):5649-56. Epub 2012 Aug 17.

44.

A hybrid approach for the automated finishing of bacterial genomes.

Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE.

Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288.

45.

A distinct lineage of influenza A virus from bats.

Tong S, Li Y, Rivailler P, Conrardy C, Castillo DA, Chen LM, Recuenco S, Ellison JA, Davis CT, York IA, Turmelle AS, Moran D, Rogers S, Shi M, Tao Y, Weil MR, Tang K, Rowe LA, Sammons S, Xu X, Frace M, Lindblade KA, Cox NJ, Anderson LJ, Rupprecht CE, Donis RO.

Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4269-74. doi: 10.1073/pnas.1116200109. Epub 2012 Feb 27.

46.

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.

Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force.

Emerg Infect Dis. 2011 Nov;17(11):2113-21. doi: 10.3201/eid1711.110794.

47.

Using next generation sequencing to identify yellow fever virus in Uganda.

McMullan LK, Frace M, Sammons SA, Shoemaker T, Balinandi S, Wamala JF, Lutwama JJ, Downing RG, Stroeher U, MacNeil A, Nichol ST.

Virology. 2012 Jan 5;422(1):1-5. doi: 10.1016/j.virol.2011.08.024. Epub 2011 Oct 2.

48.

Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.

Jordan IK, Conley AB, Antonov IV, Arthur RA, Cook ED, Cooper GP, Jones BL, Knipe KM, Lee KJ, Liu X, Mitchell GJ, Pande PR, Petit RA, Qin S, Rajan VN, Sarda S, Sebastian A, Tang S, Thapliyal R, Varghese NJ, Ye T, Katz LS, Wang X, Rowe L, Frace M, Mayer LW.

J Bacteriol. 2011 Oct;193(20):5879-80. doi: 10.1128/JB.05863-11.

49.

Neisseria Base: a comparative genomics database for Neisseria meningitidis.

Katz LS, Humphrey JC, Conley AB, Nelakuditi V, Kislyuk AO, Agrawal S, Jayaraman P, Harcourt BH, Olsen-Rasmussen MA, Frace M, Sharma NV, Mayer LW, Jordan IK.

Database (Oxford). 2011 Sep 18;2011:bar035. doi: 10.1093/database/bar035. Print 2011.

50.

Chasing Jenner's vaccine: revisiting cowpox virus classification.

Carroll DS, Emerson GL, Li Y, Sammons S, Olson V, Frace M, Nakazawa Y, Czerny CP, Tryland M, Kolodziejek J, Nowotny N, Olsen-Rasmussen M, Khristova M, Govil D, Karem K, Damon IK, Meyer H.

PLoS One. 2011;6(8):e23086. doi: 10.1371/journal.pone.0023086. Epub 2011 Aug 8.

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