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Commensal microflora-induced T cell responses mediate progressive neurodegeneration in glaucoma.

Chen H, Cho KS, Vu THK, Shen CH, Kaur M, Chen G, Mathew R, McHam ML, Fazelat A, Lashkari K, Au NPB, Tse JKY, Li Y, Yu H, Yang L, Stein-Streilein J, Ma CHE, Woolf CJ, Whary MT, Jager MJ, Fox JG, Chen J, Chen DF.

Nat Commun. 2018 Aug 10;9(1):3209. doi: 10.1038/s41467-018-05681-9.


Defective IgA response to atypical intestinal commensals in IL-21 receptor deficiency reshapes immune cell homeostasis and mucosal immunity.

Cho H, Jaime H, de Oliveira RP, Kang B, Spolski R, Vaziri T, Myers TG, Thovarai V, Shen Z, Fox JG, Leonard WJ, Kelsall BL.

Mucosal Immunol. 2018 Aug 7. doi: 10.1038/s41385-018-0056-x. [Epub ahead of print]


Lung Lobe Torsion in an Adult Male Common Marmoset (Callithrix jacchus).

Winn CB, Artim SC, Jamiel MS, Burns MA, Haupt JL, Fox JG, Muthupalani S.

Comp Med. 2018 Jul 16. doi: 10.30802/AALAS-CM-17-000128. [Epub ahead of print]


Long-term colonization dynamics of Enterococcus faecalis in implanted devices in research macaques.

Lieberman MT, Van Tyne D, Dzink-Fox J, Ma EJ, Gilmore MS, Fox JG.

Appl Environ Microbiol. 2018 Jul 13. pii: AEM.01336-18. doi: 10.1128/AEM.01336-18. [Epub ahead of print]


Evaluation of Lineage Changes in the Gastric Mucosa Following Infection With Helicobacter pylori and Specified Intestinal Flora in INS-GAS Mice.

Pinzon-Guzman C, Meyer AR, Wise R, Choi E, Muthupalani S, Wang TC, Fox JG, Goldenring JR.

J Histochem Cytochem. 2018 Jul 1:22155418785621. doi: 10.1369/0022155418785621. [Epub ahead of print]


Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence.

Smet A, Yahara K, Rossi M, Tay A, Backert S, Armin E, Fox JG, Flahou B, Ducatelle R, Haesebrouck F, Corander J.

ISME J. 2018 Jun 25. doi: 10.1038/s41396-018-0199-5. [Epub ahead of print]


Spontaneous Urinary Bladder Leiomyoma in a Rhesus Macaque (Macaca mulatta).

Scott KE, Frydman G, Fox JG, Bakthavatchalu V.

Comp Med. 2018 Jun 1;68(3):243-247. doi: 10.30802/AALAS-CM-17-000050. Epub 2018 Jun 1.


Helicobacter pylori-infected C57BL/6 mice with different gastrointestinal microbiota have contrasting gastric pathology, microbial and host immune responses.

Ge Z, Sheh A, Feng Y, Muthupalani S, Ge L, Wang C, Kurnick S, Mannion A, Whary MT, Fox JG.

Sci Rep. 2018 May 22;8(1):8014. doi: 10.1038/s41598-018-25927-2.


Plasmid-Mediated Quinolone Resistance in Shigella flexneri Isolated From Macaques.

Mannion AJ, Martin HR, Shen Z, Buckley EM, Dzink-Fox JL, Garcia A, Marini RP, Patterson MM, Fox JG.

Front Microbiol. 2018 Mar 5;9:311. doi: 10.3389/fmicb.2018.00311. eCollection 2018.


Cytotoxic Escherichia coli strains encoding colibactin isolated from immunocompromised mice with urosepsis and meningitis.

Bakthavatchalu V, Wert KJ, Feng Y, Mannion A, Ge Z, Garcia A, Scott KE, Caron TJ, Madden CM, Jacobsen JT, Victora G, Jaenisch R, Fox JG.

PLoS One. 2018 Mar 19;13(3):e0194443. doi: 10.1371/journal.pone.0194443. eCollection 2018.


Cutaneous Dermatophilosis in a Meadow Jumping Mouse (Zapus hudsonius).

Caron TJ, Artim SC, Israelsen WJ, Holcombe HR, Fox JG, Bakthavatchalu V.

Comp Med. 2018 Feb 1;68(1):25-30.


Evaluation of 6 Methods for Aerobic Bacterial Sanitization of Smartphones.

Lieberman MT, Madden CM, Ma EJ, Fox JG.

J Am Assoc Lab Anim Sci. 2018 Jan 1;57(1):24-29.


CXCR4-expressing Mist1+ progenitors in the gastric antrum contribute to gastric cancer development.

Sakitani K, Hayakawa Y, Deng H, Ariyama H, Kinoshita H, Konishi M, Ono S, Suzuki N, Ihara S, Niu Z, Kim W, Tanaka T, Liu H, Chen X, Tailor Y, Fox JG, Konieczny SF, Onodera H, Sepulveda AR, Asfaha S, Hirata Y, Worthley DL, Koike K, Wang TC.

Oncotarget. 2017 Nov 10;8(67):111012-111025. doi: 10.18632/oncotarget.22451. eCollection 2017 Dec 19.


Cytotoxic Escherichia coli strains encoding colibactin and cytotoxic necrotizing factor (CNF) colonize laboratory macaques.

Feng Y, Mannion A, Madden CM, Swennes AG, Townes C, Byrd C, Marini RP, Fox JG.

Gut Pathog. 2017 Dec 6;9:71. doi: 10.1186/s13099-017-0220-y. eCollection 2017.


Isolation and molecular characterization of group B Streptococcus from laboratory Long-Evans rats (Rattus norvegicus) with and without invasive group B streptococcal disease.

Bodi Winn C, Bakthavatchalu V, Esmail MY, Feng Y, Dzink-Fox J, Richey L, Perkins SE, Nordberg EK, Fox JG.

J Med Microbiol. 2017 Nov 21. doi: 10.1099/jmm.0.000627. [Epub ahead of print]


Minimal standards for describing new species belonging to the families Campylobacteraceae and Helicobacteraceae: Campylobacter, Arcobacter, Helicobacter and Wolinella spp.

On SLW, Miller WG, Houf K, Fox JG, Vandamme P.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5296-5311. doi: 10.1099/ijsem.0.002255. Epub 2017 Oct 16.


Risk factors for bleeding complications after nephrologist-performed native renal biopsy.

Lees JS, McQuarrie EP, Mordi N, Geddes CC, Fox JG, Mackinnon B.

Clin Kidney J. 2017 Aug;10(4):573-577. doi: 10.1093/ckj/sfx012. Epub 2017 Mar 15.


Diacylglycerol kinase synthesized by commensal Lactobacillus reuteri diminishes protein kinase C phosphorylation and histamine-mediated signaling in the mammalian intestinal epithelium.

Ganesh BP, Hall A, Ayyaswamy S, Nelson JW, Fultz R, Major A, Haag A, Esparza M, Lugo M, Venable S, Whary M, Fox JG, Versalovic J.

Mucosal Immunol. 2018 Mar;11(2):380-393. doi: 10.1038/mi.2017.58. Epub 2017 Jul 26.


Helicobacter species are potent drivers of colonic T cell responses in homeostasis and inflammation.

Chai JN, Peng Y, Rengarajan S, Solomon BD, Ai TL, Shen Z, Perry JSA, Knoop KA, Tanoue T, Narushima S, Honda K, Elson CO, Newberry RD, Stappenbeck TS, Kau AL, Peterson DA, Fox JG, Hsieh CS.

Sci Immunol. 2017 Jul 21;2(13). pii: eaal5068. doi: 10.1126/sciimmunol.aal5068.


Macrophage dysfunction initiates colitis during weaning of infant mice lacking the interleukin-10 receptor.

Redhu NS, Bakthavatchalu V, Conaway EA, Shouval DS, Tsou A, Goettel JA, Biswas A, Wang C, Field M, Muller W, Bleich A, Li N, Gerber GK, Bry L, Fox JG, Snapper SB, Horwitz BH.

Elife. 2017 Jul 5;6. pii: e27652. doi: 10.7554/eLife.27652.


Multiple socioeconomic deprivation and impact on survival in patients with primary glomerulonephritis.

McQuarrie EP, Mackinnon B, Bell S, Fleming S, McNeice V, Stewart G, Fox JG, Geddes CC; Scottish Renal Biopsy Registry.

Clin Kidney J. 2017 Feb;10(1):49-54. doi: 10.1093/ckj/sfw127. Epub 2017 Jan 7.


A Summary of the 2016 James W. Freston Conference of the American Gastroenterological Association: Intestinal Metaplasia in the Esophagus and Stomach: Origins, Differences, Similarities and Significance.

Spechler SJ, Merchant JL, Wang TC, Chandrasoma P, Fox JG, Genta RM, Goldenring JR, Hayakawa Y, Kuipers EJ, Lund PK, McKeon F, Mills JC, Odze RD, Peek RM Jr, Pham T, Que J, Rustgi AK, Shaheen NJ, Shivdasani RA, Souza RF, Storz P, Todisco A, Wang DH, Wright NA.

Gastroenterology. 2017 Jul;153(1):e6-e13. doi: 10.1053/j.gastro.2017.05.050. Epub 2017 Jun 3. No abstract available.


Isthmus Stem Cells Are the Origins of Metaplasia in the Gastric Corpus.

Hayakawa Y, Fox JG, Wang TC.

Cell Mol Gastroenterol Hepatol. 2017 Mar 6;4(1):89-94. doi: 10.1016/j.jcmgh.2017.02.009. eCollection 2017 Jul.


Adult-onset, chronic, cyclic thrombocytopenia in a Rhesus macaque (Macaca mulatta) after dengue virus vaccination and viral challenge.

Frydman GH, Metcalf Pate KA, Marini RP, de Laforcade AM, Bosch I, Bakthavatchalu V, Muthupalani S, Swennes AG, Lyons CE, Tompkins RG, Fox JG.

Vet Clin Pathol. 2017 Jun;46(2):238-247. doi: 10.1111/vcp.12497. Epub 2017 May 18.


The Origins of Gastric Cancer From Gastric Stem Cells: Lessons From Mouse Models.

Hayakawa Y, Fox JG, Wang TC.

Cell Mol Gastroenterol Hepatol. 2017 Feb 20;3(3):331-338. doi: 10.1016/j.jcmgh.2017.01.013. eCollection 2017 May. Review.


Local and Systemic Changes Associated with Long-term, Percutaneous, Static Implantation of Titanium Alloys in Rhesus Macaques (Macaca mulatta).

Frydman GH, Marini RP, Bakthavatchalu V, Biddle KE, Muthupalani S, Vanderburg CR, Lai B, Bendapudi PK, Tompkins RG, Fox JG.

Comp Med. 2017 Mar 1;67(2):165-175.


Helicobacter pylori infection and low dietary iron alter behavior, induce iron deficiency anemia, and modulate hippocampal gene expression in female C57BL/6 mice.

Burns M, Amaya A, Bodi C, Ge Z, Bakthavatchalu V, Ennis K, Wang TC, Georgieff M, Fox JG.

PLoS One. 2017 Mar 29;12(3):e0173108. doi: 10.1371/journal.pone.0173108. eCollection 2017.


Interleukin-22 drives nitric oxide-dependent DNA damage and dysplasia in a murine model of colitis-associated cancer.

Wang C, Gong G, Sheh A, Muthupalani S, Bryant EM, Puglisi DA, Holcombe H, Conaway EA, Parry NAP, Bakthavatchalu V, Short SP, Williams CS, Wogan GN, Tannenbaum SR, Fox JG, Horwitz BH.

Mucosal Immunol. 2017 Nov;10(6):1504-1517. doi: 10.1038/mi.2017.9. Epub 2017 Feb 15.


Novel urease-negative Helicobacter sp. 'H. enhydrae sp. nov.' isolated from inflamed gastric tissue of southern sea otters.

Shen Z, Batac F, Mannion A, Miller MA, Bakthavatchalu V, Ho C, Manning S, Paster BJ, Fox JG.

Dis Aquat Organ. 2017 Feb 8;123(1):1-11. doi: 10.3354/dao03082.


Exosome secretome and mediated signaling in breast cancer patients with nontuberculous mycobacterial disease.

Philley JV, Kannan A, Griffith DE, Devine MS, Benwill JL, Wallace RJ Jr, Brown-Elliott BA, Thakkar F, Taskar V, Fox JG, Alqaid A, Bains H, Gupta S, Dasgupta S.

Oncotarget. 2017 Mar 14;8(11):18070-18081. doi: 10.18632/oncotarget.14964.


Helicobacter hepaticus cytolethal distending toxin promotes intestinal carcinogenesis in 129Rag2-deficient mice.

Ge Z, Feng Y, Ge L, Parry N, Muthupalani S, Fox JG.

Cell Microbiol. 2017 Jul;19(7). doi: 10.1111/cmi.12728. Epub 2017 Feb 20.


Characterization of Multi-Drug Resistant Enterococcus faecalis Isolated from Cephalic Recording Chambers in Research Macaques (Macaca spp.).

Woods SE, Lieberman MT, Lebreton F, Trowel E, de la Fuente-Núñez C, Dzink-Fox J, Gilmore MS, Fox JG.

PLoS One. 2017 Jan 12;12(1):e0169293. doi: 10.1371/journal.pone.0169293. eCollection 2017.


Whole-Genome Sequences and Classification of Streptococcus agalactiae Strains Isolated from Laboratory-Reared Long-Evans Rats (Rattus norvegicus).

Bodi Winn C, Dzink-Fox J, Feng Y, Shen Z, Bakthavatchalu V, Fox JG.

Genome Announc. 2017 Jan 5;5(1). pii: e01435-16. doi: 10.1128/genomeA.01435-16.


Individual differences in stress vulnerability: The role of gut pathobionts in stress-induced colitis.

Langgartner D, Peterlik D, Foertsch S, Füchsl AM, Brokmann P, Flor PJ, Shen Z, Fox JG, Uschold-Schmidt N, Lowry CA, Reber SO.

Brain Behav Immun. 2017 Aug;64:23-32. doi: 10.1016/j.bbi.2016.12.019. Epub 2016 Dec 21.


GPR4 deficiency alleviates intestinal inflammation in a mouse model of acute experimental colitis.

Sanderlin EJ, Leffler NR, Lertpiriyapong K, Cai Q, Hong H, Bakthavatchalu V, Fox JG, Oswald JZ, Justus CR, Krewson EA, O'Rourke D, Yang LV.

Biochim Biophys Acta. 2017 Feb;1863(2):569-584. doi: 10.1016/j.bbadis.2016.12.005. Epub 2016 Dec 7.


Draft Genome Sequences of Five Novel Polyketide Synthetase-Containing Mouse Escherichia coli Strains.

Mannion A, Shen Z, Feng Y, Garcia A, Fox JG.

Genome Announc. 2016 Oct 6;4(5). pii: e01082-16. doi: 10.1128/genomeA.01082-16.


Venous Thromboembolism in Primary Nephrotic Syndrome - Is the Risk High Enough to Justify Prophylactic Anticoagulation?

Rankin AJ, McQuarrie EP, Fox JG, Geddes CC, MacKinnon B; Scottish Renal Biopsy Registry.

Nephron. 2017;135(1):39-45. doi: 10.1159/000448628. Epub 2016 Sep 24.


Novel Helicobacter species H.japonicum isolated from laboratory mice from Japan induces typhlocolitis and lower bowel carcinoma in C57BL/129 IL10-/- mice.

Shen Z, Feng Y, Muthupalani S, Sheh A, Cheaney LE, Kaufman CA, Gong G, Paster BJ, Fox JG.

Carcinogenesis. 2016 Dec;37(12):1190-1198. Epub 2016 Sep 21.


Fucosylation Deficiency in Mice Leads to Colitis and Adenocarcinoma.

Wang Y, Huang D, Chen KY, Cui M, Wang W, Huang X, Awadellah A, Li Q, Friedman A, Xin WW, Di Martino L, Cominelli F, Miron A, Chan R, Fox JG, Xu Y, Shen X, Kalady MF, Markowitz S, Maillard I, Lowe JB, Xin W, Zhou L.

Gastroenterology. 2017 Jan;152(1):193-205.e10. doi: 10.1053/j.gastro.2016.09.004. Epub 2016 Sep 14.


The commensal microbiota exacerbate infectious colitis in stressor-exposed mice.

Galley JD, Parry NM, Ahmer BMM, Fox JG, Bailey MT.

Brain Behav Immun. 2017 Feb;60:44-50. doi: 10.1016/j.bbi.2016.09.010. Epub 2016 Sep 12.


Technical Advance: Changes in neutrophil migration patterns upon contact with platelets in a microfluidic assay.

Frydman GH, Le A, Ellett F, Jorgensen J, Fox JG, Tompkins RG, Irimia D.

J Leukoc Biol. 2017 Mar;101(3):797-806. doi: 10.1189/jlb.1TA1115-517RR. Epub 2016 Sep 14.


Cytotoxic Escherichia coli strains encoding colibactin colonize laboratory mice.

García A, Mannion A, Feng Y, Madden CM, Bakthavatchalu V, Shen Z, Ge Z, Fox JG.

Microbes Infect. 2016 Dec;18(12):777-786. doi: 10.1016/j.micinf.2016.07.005. Epub 2016 Jul 30.


Diseases Transmitted by Man's Worst Friend: the Rat.

Fox JG.

Microbiol Spectr. 2015 Dec;3(6). doi: 10.1128/microbiolspec.IOL5-0015-2015. Review.


Helicobacter saguini, a Novel Helicobacter Isolated from Cotton-Top Tamarins with Ulcerative Colitis, Has Proinflammatory Properties and Induces Typhlocolitis and Dysplasia in Gnotobiotic IL-10-/- Mice.

Shen Z, Mannion A, Whary MT, Muthupalani S, Sheh A, Feng Y, Gong G, Vandamme P, Holcombe HR, Paster BJ, Fox JG.

Infect Immun. 2016 Jul 21;84(8):2307-2316. doi: 10.1128/IAI.00235-16. Print 2016 Aug.


Factors influencing withdrawal from dialysis: a national registry study.

Findlay MD, Donaldson K, Doyle A, Fox JG, Khan I, McDonald J, Metcalfe W, Peel RK, Shilliday I, Spalding E, Stewart GA, Traynor JP, Mackinnon B; Scottish Renal Registry (SRR).

Nephrol Dial Transplant. 2016 Dec;31(12):2041-2048. Epub 2016 Apr 21.


Coagulation Biomarkers in Healthy Chinese-Origin Rhesus Macaques (Macaca mulatta).

Frydman GH, Bendapudi PK, Marini RP, Vanderburg CR, Tompkins RG, Fox JG.

J Am Assoc Lab Anim Sci. 2016;55(3):252-9.


Enterohepatic Helicobacter spp. in cats with non-haematopoietic intestinal carcinoma: a survey of 55 cases.

Swennes AG, Parry NM, Feng Y, Sawyer E, Lohr BR, Twedt DC, Fox JG.

J Med Microbiol. 2016 Aug;65(8):814-20. doi: 10.1099/jmm.0.000274. Epub 2016 May 10.


Lamellipodin-Deficient Mice: A Model of Rectal Carcinoma.

Miller CL, Muthupalani S, Shen Z, Drees F, Ge Z, Feng Y, Chen X, Gong G, Nagar KK, Wang TC, Gertler FB, Fox JG.

PLoS One. 2016 Apr 5;11(4):e0152940. doi: 10.1371/journal.pone.0152940. eCollection 2016.


Histology and immunohistochemistry of severe inflammatory bowel disease versus lymphoma in the ferret (Mustela putorius furo).

Watson MK, Cazzini P, Mayer J, Gottdenker N, Reavill D, Parry N, Fox JG, Sakamoto K.

J Vet Diagn Invest. 2016 May;28(3):198-206. doi: 10.1177/1040638716641156. Epub 2016 Mar 29.


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