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Items: 27


GeoBioMed sheds new light on human kidney stone crystallization and dissolution.

Sivaguru M, Lieske JC, Krambeck AE, Fouke BW.

Nat Rev Urol. 2020 Jan;17(1):1-2. doi: 10.1038/s41585-019-0256-5. No abstract available.


Adaptive Evolution of Escherichia coli to Ciprofloxacin in Controlled Stress Environments: Contrasting Patterns of Resistance in Spatially Varying versus Uniformly Mixed Concentration Conditions.

Deng J, Zhou L, Sanford RA, Shechtman LA, Dong Y, Alcalde RE, Sivaguru M, Fried GA, Werth CJ, Fouke BW.

Environ Sci Technol. 2019 Jul 16;53(14):7996-8005. doi: 10.1021/acs.est.9b00881. Epub 2019 Jul 3.


Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats.

Dong Y, Sanford RA, Inskeep WP, Srivastava V, Bulone V, Fields CJ, Yau PM, Sivaguru M, Ahrén D, Fouke KW, Weber J, Werth CR, Cann IK, Keating KM, Khetani RS, Hernandez AG, Wright C, Band M, Imai BS, Fried GA, Fouke BW.

Astrobiology. 2019 Dec;19(12):1442-1458. doi: 10.1089/ast.2018.1965. Epub 2019 Apr 30.


Motility of Shewanella oneidensis MR-1 Allows for Nitrate Reduction in the Toxic Region of a Ciprofloxacin Concentration Gradient in a Microfluidic Reactor.

Alcalde RE, Michelson K, Zhou L, Schmitz EV, Deng J, Sanford RA, Fouke BW, Werth CJ.

Environ Sci Technol. 2019 Mar 5;53(5):2778-2787. doi: 10.1021/acs.est.8b04838. Epub 2019 Feb 14.


Geobiology reveals how human kidney stones dissolve in vivo.

Sivaguru M, Saw JJ, Williams JC Jr, Lieske JC, Krambeck AE, Romero MF, Chia N, Schwaderer AL, Alcalde RE, Bruce WJ, Wildman DE, Fried GA, Werth CJ, Reeder RJ, Yau PM, Sanford RA, Fouke BW.

Sci Rep. 2018 Sep 13;8(1):13731. doi: 10.1038/s41598-018-31890-9.


Real rock-microfluidic flow cell: A test bed for real-time in situ analysis of flow, transport, and reaction in a subsurface reactive transport environment.

Singh R, Sivaguru M, Fried GA, Fouke BW, Sanford RA, Carrera M, Werth CJ.

J Contam Hydrol. 2017 Sep;204:28-39. doi: 10.1016/j.jconhyd.2017.08.001. Epub 2017 Aug 4.


Site-based data curation based on hot spring geobiology.

Palmer CL, Thomer AK, Baker KS, Wickett KM, Hendrix CL, Rodman A, Sigler S, Fouke BW.

PLoS One. 2017 Mar 2;12(3):e0172090. doi: 10.1371/journal.pone.0172090. eCollection 2017.


Hematite Reduction Buffers Acid Generation and Enhances Nutrient Uptake by a Fermentative Iron Reducing Bacterium, Orenia metallireducens Strain Z6.

Dong Y, Sanford RA, Chang YJ, McInerney MJ, Fouke BW.

Environ Sci Technol. 2017 Jan 3;51(1):232-242. doi: 10.1021/acs.est.6b04126. Epub 2016 Dec 22.


Orenia metallireducens sp. nov. Strain Z6, a Novel Metal-Reducing Member of the Phylum Firmicutes from the Deep Subsurface.

Dong Y, Sanford RA, Boyanov MI, Kemner KM, Flynn TM, O'Loughlin EJ, Chang YJ, Locke RA Jr, Weber JR, Egan SM, Mackie RI, Cann I, Fouke BW.

Appl Environ Microbiol. 2016 Oct 14;82(21):6440-6453. Print 2016 Nov 1.


Tepidibacillus decaturensis sp. nov., a microaerophilic, moderately thermophilic iron-reducing bacterium isolated from 1.7 km depth groundwater.

Dong Y, Sanford RA, Boyanov MI, Kemner KM, Flynn TM, O'Loughlin EJ, Locke RA, Weber JR, Egan SM, Fouke BW.

Int J Syst Evol Microbiol. 2016 Oct;66(10):3964-3971. doi: 10.1099/ijsem.0.001295. Epub 2016 Jul 11.


Proteomic Analysis of a Poplar Cell Suspension Culture Suggests a Major Role of Protein S-Acylation in Diverse Cellular Processes.

Srivastava V, Weber JR, Malm E, Fouke BW, Bulone V.

Front Plant Sci. 2016 Apr 12;7:477. doi: 10.3389/fpls.2016.00477. eCollection 2016.


Metabolism-Induced CaCO3 Biomineralization During Reactive Transport in a Micromodel: Implications for Porosity Alteration.

Singh R, Yoon H, Sanford RA, Katz L, Fouke BW, Werth CJ.

Environ Sci Technol. 2015 Oct 20;49(20):12094-104. doi: 10.1021/acs.est.5b00152. Epub 2015 Oct 5.


Fe-oxide grain coatings support bacterial Fe-reducing metabolisms in 1.7-2.0 km-deep subsurface quartz arenite sandstone reservoirs of the Illinois Basin (USA).

Dong Y, Sanford RA, Locke RA 2nd, Cann IK, Mackie RI, Fouke BW.

Front Microbiol. 2014 Sep 30;5:511. doi: 10.3389/fmicb.2014.00511. eCollection 2014.


Multimodal optical microscopy methods reveal polyp tissue morphology and structure in Caribbean reef building corals.

Sivaguru M, Fried GA, Miller CA, Fouke BW.

J Vis Exp. 2014 Sep 5;(91):e51824. doi: 10.3791/51824.


Temperature and injection water source influence microbial community structure in four Alaskan North Slope hydrocarbon reservoirs.

Piceno YM, Reid FC, Tom LM, Conrad ME, Bill M, Hubbard CG, Fouke BW, Graff CJ, Han J, Stringfellow WT, Hanlon JS, Hu P, Hazen TC, Andersen GL.

Front Microbiol. 2014 Aug 7;5:409. doi: 10.3389/fmicb.2014.00409. eCollection 2014.


Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress.

Gust KA, Najar FZ, Habib T, Lotufo GR, Piggot AM, Fouke BW, Laird JG, Wilbanks MS, Rawat A, Indest KJ, Roe BA, Perkins EJ.

BMC Genomics. 2014 Jul 12;15:591. doi: 10.1186/1471-2164-15-591.


Halomonas sulfidaeris-dominated microbial community inhabits a 1.8 km-deep subsurface Cambrian Sandstone reservoir.

Dong Y, Kumar CG, Chia N, Kim PJ, Miller PA, Price ND, Cann IK, Flynn TM, Sanford RA, Krapac IG, Locke RA 2nd, Hong PY, Tamaki H, Liu WT, Mackie RI, Hernandez AG, Wright CL, Mikel MA, Walker JL, Sivaguru M, Fried G, Yannarell AC, Fouke BW.

Environ Microbiol. 2014 Jun;16(6):1695-708. doi: 10.1111/1462-2920.12325. Epub 2013 Dec 12.


Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.


Pore-scale study of transverse mixing induced CaCO₃ precipitation and permeability reduction in a model subsurface sedimentary system.

Zhang C, Dehoff K, Hess N, Oostrom M, Wietsma TW, Valocchi AJ, Fouke BW, Werth CJ.

Environ Sci Technol. 2010 Oct 15;44(20):7833-8. doi: 10.1021/es1019788.


Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.

PLoS One. 2010 Mar 19;5(3):e9773. doi: 10.1371/journal.pone.0009773.


Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution.

Klaus JS, Janse I, Heikoop JM, Sanford RA, Fouke BW.

Environ Microbiol. 2007 May;9(5):1291-305.


Bacterial community associated with black band disease in corals.

Frias-Lopez J, Klaus JS, Bonheyo GT, Fouke BW.

Appl Environ Microbiol. 2004 Oct;70(10):5955-62.


Cyanobacteria associated with coral black band disease in Caribbean and Indo-Pacific Reefs.

Frias-Lopez J, Bonheyo GT, Jin Q, Fouke BW.

Appl Environ Microbiol. 2003 Apr;69(4):2409-13.


Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces.

Frias-Lopez J, Zerkle AL, Bonheyo GT, Fouke BW.

Appl Environ Microbiol. 2002 May;68(5):2214-28.


Depositional facies and aqueous-solid geochemistry of travertine-depositing hot springs (Angel Terrace, Mammoth Hot Springs, Yellowstone National Park, U.S.A.).

Fouke BW, Farmer JD, Des Marais DJ, Pratt L, Sturchio NC, Burns PC, Discipulo MK.

J Sediment Res A Sediment Petrol Process. 2000 May;70(3):565-85.


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