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Items: 31


Dietary Patterns Are Associated with Serum Metabolite Patterns and Their Association Is Influenced by Gut Bacteria among Older German Adults.

Oluwagbemigun K, Foerster J, Watkins C, Fouhy F, Stanton C, Bergmann MM, Boeing H, Nöthlings U.

J Nutr. 2019 Sep 2. pii: nxz194. doi: 10.1093/jn/nxz194. [Epub ahead of print]


Gut microbiome patterns depending on children's psychosocial stress: Reports versus biomarkers.

Michels N, Van de Wiele T, Fouhy F, O'Mahony S, Clarke G, Keane J.

Brain Behav Immun. 2019 Aug;80:751-762. doi: 10.1016/j.bbi.2019.05.024. Epub 2019 May 18.


Mid-life microbiota crises: middle age is associated with pervasive neuroimmune alterations that are reversed by targeting the gut microbiome.

Boehme M, van de Wouw M, Bastiaanssen TFS, Olavarría-Ramírez L, Lyons K, Fouhy F, Golubeva AV, Moloney GM, Minuto C, Sandhu KV, Scott KA, Clarke G, Stanton C, Dinan TG, Schellekens H, Cryan JF.

Mol Psychiatry. 2019 May 16. doi: 10.1038/s41380-019-0425-1. [Epub ahead of print]


Preventing adolescent stress-induced cognitive and microbiome changes by diet.

Provensi G, Schmidt SD, Boehme M, Bastiaanssen TFS, Rani B, Costa A, Busca K, Fouhy F, Strain C, Stanton C, Blandina P, Izquierdo I, Cryan JF, Passani MB.

Proc Natl Acad Sci U S A. 2019 May 7;116(19):9644-9651. doi: 10.1073/pnas.1820832116. Epub 2019 Apr 22.


Perinatal factors affect the gut microbiota up to four years after birth.

Fouhy F, Watkins C, Hill CJ, O'Shea CA, Nagle B, Dempsey EM, O'Toole PW, Ross RP, Ryan CA, Stanton C.

Nat Commun. 2019 Apr 3;10(1):1517. doi: 10.1038/s41467-019-09252-4.


Manipulation of gut microbiota blunts the ventilatory response to hypercapnia in adult rats.

O'Connor KM, Lucking EF, Golubeva AV, Strain CR, Fouhy F, Cenit MC, Dhaliwal P, Bastiaanssen TFS, Burns DP, Stanton C, Clarke G, Cryan JF, O'Halloran KD.

EBioMedicine. 2019 Jun;44:618-638. doi: 10.1016/j.ebiom.2019.03.029. Epub 2019 Mar 18.


Chronic intermittent hypoxia disrupts cardiorespiratory homeostasis and gut microbiota composition in adult male guinea-pigs.

Lucking EF, O'Connor KM, Strain CR, Fouhy F, Bastiaanssen TFS, Burns DP, Golubeva AV, Stanton C, Clarke G, Cryan JF, O'Halloran KD.

EBioMedicine. 2018 Dec;38:191-205. doi: 10.1016/j.ebiom.2018.11.010. Epub 2018 Nov 13.


Gut microbiome correlates with altered striatal dopamine receptor expression in a model of compulsive alcohol seeking.

Jadhav KS, Peterson VL, Halfon O, Ahern G, Fouhy F, Stanton C, Dinan TG, Cryan JF, Boutrel B.

Neuropharmacology. 2018 Oct;141:249-259. doi: 10.1016/j.neuropharm.2018.08.026. Epub 2018 Aug 31.


Differential effects of psychotropic drugs on microbiome composition and gastrointestinal function.

Cussotto S, Strain CR, Fouhy F, Strain RG, Peterson VL, Clarke G, Stanton C, Dinan TG, Cryan JF.

Psychopharmacology (Berl). 2019 May;236(5):1671-1685. doi: 10.1007/s00213-018-5006-5. Epub 2018 Aug 28.


A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis.

Fouhy F, Ronan NJ, O'Sullivan O, McCarthy Y, Walsh AM, Murphy DM, Daly M, Flanagan ET, Fleming C, McCarthy M, Shortt C, Eustace JA, Shanahan F, Rea MC, Ross RP, Stanton C, Plant BJ.

Sci Rep. 2017 Jul 27;7(1):6685. doi: 10.1038/s41598-017-06880-y.


Erratum to: The altered gut microbiota in adults with cystic fibrosis.

Burke DG, Fouhy F, Harrison MJ, Rea MC, Cotter PD, O'Sullivan O, Stanton C, Hill C, Shanahan F, Plant BJ, Ross RP.

BMC Microbiol. 2017 Apr 27;17(1):102. doi: 10.1186/s12866-017-1006-6. No abstract available.


The altered gut microbiota in adults with cystic fibrosis.

Burke DG, Fouhy F, Harrison MJ, Rea MC, Cotter PD, O'Sullivan O, Stanton C, Hill C, Shanahan F, Plant BJ, Ross RP.

BMC Microbiol. 2017 Mar 9;17(1):58. doi: 10.1186/s12866-017-0968-8. Erratum in: BMC Microbiol. 2017 Apr 27;17 (1):102.


Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model.

Pereira-Fantini PM, Byars SG, Pitt J, Lapthorne S, Fouhy F, Cotter PD, Bines JE.

Sci Rep. 2017 Feb 23;7:43326. doi: 10.1038/srep43326.


16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.

Fouhy F, Clooney AG, Stanton C, Claesson MJ, Cotter PD.

BMC Microbiol. 2016 Jun 24;16(1):123. doi: 10.1186/s12866-016-0738-z.


Short bowel syndrome (SBS)-associated alterations within the gut-liver axis evolve early and persist long-term in the piglet model of short bowel syndrome.

Pereira-Fantini PM, Bines JE, Lapthorne S, Fouhy F, Scurr M, Cotter PD, Gahan CG, Joyce SA.

J Gastroenterol Hepatol. 2016 Dec;31(12):1946-1955. doi: 10.1111/jgh.13383.


Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Clooney AG, Fouhy F, Sleator RD, O' Driscoll A, Stanton C, Cotter PD, Claesson MJ.

PLoS One. 2016 Feb 5;11(2):e0148028. doi: 10.1371/journal.pone.0148028. eCollection 2016.


Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery.

Lapthorne S, Bines JE, Fouhy F, Dellios NL, Wilson G, Thomas SL, Scurr M, Stanton C, Cotter PD, Pereira-Fantini PM.

World J Gastroenterol. 2015 Apr 14;21(14):4150-8. doi: 10.3748/wjg.v21.i14.4150.


Proteomics as the final step in the functional metagenomics study of antimicrobial resistance.

Fouhy F, Stanton C, Cotter PD, Hill C, Walsh F.

Front Microbiol. 2015 Mar 3;6:172. doi: 10.3389/fmicb.2015.00172. eCollection 2015.


The effects of freezing on faecal microbiota as determined using MiSeq sequencing and culture-based investigations.

Fouhy F, Deane J, Rea MC, O'Sullivan Ó, Ross RP, O'Callaghan G, Plant BJ, Stanton C.

PLoS One. 2015 Mar 6;10(3):e0119355. doi: 10.1371/journal.pone.0119355. eCollection 2015.


Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library.

Fouhy F, Ogilvie LA, Jones BV, Ross RP, Ryan AC, Dempsey EM, Fitzgerald GF, Stanton C, Cotter PD.

PLoS One. 2014 Sep 23;9(9):e108016. doi: 10.1371/journal.pone.0108016. eCollection 2014.


Altered FXR signalling is associated with bile acid dysmetabolism in short bowel syndrome-associated liver disease.

Pereira-Fantini PM, Lapthorne S, Joyce SA, Dellios NL, Wilson G, Fouhy F, Thomas SL, Scurr M, Hill C, Gahan CG, Cotter PD, Fuller PJ, Hardikar W, Bines JE.

J Hepatol. 2014 Nov;61(5):1115-25. doi: 10.1016/j.jhep.2014.06.025. Epub 2014 Jul 3.


A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota.

Fouhy F, Ross RP, Fitzgerald GF, Stanton C, Cotter PD.

BMC Microbiol. 2014 Feb 5;14:25. doi: 10.1186/1471-2180-14-25.


In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams.

Fouhy F, O'Connell Motherway M, Fitzgerald GF, Ross RP, Stanton C, van Sinderen D, Cotter PD.

PLoS One. 2013 Dec 6;8(12):e82653. doi: 10.1371/journal.pone.0082653. eCollection 2013.


Gut microbial diversity is reduced and is associated with colonic inflammation in a piglet model of short bowel syndrome.

Lapthorne S, Pereira-Fantini PM, Fouhy F, Wilson G, Thomas SL, Dellios NL, Scurr M, O'Sullivan O, Ross RP, Stanton C, Fitzgerald GF, Cotter PD, Bines JE.

Gut Microbes. 2013 May-Jun;4(3):212-21. doi: 10.4161/gmic.24372. Epub 2013 Apr 2.


Microbial composition of human appendices from patients following appendectomy.

Guinane CM, Tadrous A, Fouhy F, Ryan CA, Dempsey EM, Murphy B, Andrews E, Cotter PD, Stanton C, Ross RP.

MBio. 2013 Jan 15;4(1). pii: e00366-12. doi: 10.1128/mBio.00366-12.


High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin.

Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, Murphy B, Ross RP, Fitzgerald GF, Stanton C, Cotter PD.

Antimicrob Agents Chemother. 2012 Nov;56(11):5811-20. doi: 10.1128/AAC.00789-12. Epub 2012 Sep 4.


Composition of the early intestinal microbiota: knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps.

Fouhy F, Ross RP, Fitzgerald GF, Stanton C, Cotter PD.

Gut Microbes. 2012 May-Jun;3(3):203-20. doi: 10.4161/gmic.20169. Epub 2012 May 1. Review.


Contrasting effects of Bifidobacterium breve NCIMB 702258 and Bifidobacterium breve DPC 6330 on the composition of murine brain fatty acids and gut microbiota.

Wall R, Marques TM, O'Sullivan O, Ross RP, Shanahan F, Quigley EM, Dinan TG, Kiely B, Fitzgerald GF, Cotter PD, Fouhy F, Stanton C.

Am J Clin Nutr. 2012 May;95(5):1278-87. doi: 10.3945/ajcn.111.026435. Epub 2012 Apr 4.


Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity.

Murphy EF, Cotter PD, Hogan A, O'Sullivan O, Joyce A, Fouhy F, Clarke SF, Marques TM, O'Toole PW, Stanton C, Quigley EM, Daly C, Ross PR, O'Doherty RM, Shanahan F.

Gut. 2013 Feb;62(2):220-6. doi: 10.1136/gutjnl-2011-300705. Epub 2012 Feb 16. Erratum in: Gut. 2013 Feb;62(2):226.


Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models.

Murphy EF, Cotter PD, Healy S, Marques TM, O'Sullivan O, Fouhy F, Clarke SF, O'Toole PW, Quigley EM, Stanton C, Ross PR, O'Doherty RM, Shanahan F.

Gut. 2010 Dec;59(12):1635-42. doi: 10.1136/gut.2010.215665. Epub 2010 Oct 6.


Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon.

Rea MC, Dobson A, O'Sullivan O, Crispie F, Fouhy F, Cotter PD, Shanahan F, Kiely B, Hill C, Ross RP.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4639-44. doi: 10.1073/pnas.1001224107. Epub 2010 Jun 29.

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