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The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes.

Niccum BA, Lee H, MohammedIsmail W, Tang H, Foster PL.

mBio. 2019 Jul 2;10(4). pii: e01226-19. doi: 10.1128/mBio.01226-19.


The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of Escherichia coli.

Niccum BA, Lee H, MohammedIsmail W, Tang H, Foster PL.

Genetics. 2018 Aug;209(4):1043-1054. doi: 10.1534/genetics.117.300515. Epub 2018 Jun 15.


Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli.

Foster PL, Niccum BA, Popodi E, Townes JP, Lee H, MohammedIsmail W, Tang H.

Genetics. 2018 Aug;209(4):1029-1042. doi: 10.1534/genetics.118.301237. Epub 2018 Jun 15.


Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution.

Kram KE, Geiger C, Ismail WM, Lee H, Tang H, Foster PL, Finkel SE.

mSystems. 2017 Mar 7;2(2). pii: e00192-16. doi: 10.1128/mSystems.00192-16. eCollection 2017 Mar-Apr.


Genetic drift, selection and the evolution of the mutation rate.

Lynch M, Ackerman MS, Gout JF, Long H, Sung W, Thomas WK, Foster PL.

Nat Rev Genet. 2016 Oct 14;17(11):704-714. doi: 10.1038/nrg.2016.104. Review.


Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli.

Lee H, Doak TG, Popodi E, Foster PL, Tang H.

Nucleic Acids Res. 2016 Sep 6;44(15):7109-19. doi: 10.1093/nar/gkw647. Epub 2016 Jul 18.


Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli.

Bhagwat AS, Hao W, Townes JP, Lee H, Tang H, Foster PL.

Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):2176-81. doi: 10.1073/pnas.1522325113. Epub 2016 Feb 2.


Interprofessional Education, Dentistry, and the New Zealand experience: a commentary.

Ding C, Foster PL, Rangnekar S.

N Z Dent J. 2015 Sep;111(3):109-12. No abstract available.


Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Foster PL, Lee H, Popodi E, Townes JP, Tang H.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5990-9. doi: 10.1073/pnas.1512136112. Epub 2015 Oct 12.


Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA Damage.

Mallik S, Popodi EM, Hanson AJ, Foster PL.

J Bacteriol. 2015 Sep;197(17):2792-809. doi: 10.1128/JB.00101-15. Epub 2015 Jun 22.


Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments.

Sung W, Ackerman MS, Gout JF, Miller SF, Williams E, Foster PL, Lynch M.

Mol Biol Evol. 2015 Jul;32(7):1672-83. doi: 10.1093/molbev/msv055. Epub 2015 Mar 6.


Detection of structural variants involving repetitive regions in the reference genome.

Lee H, Popodi E, Foster PL, Tang H.

J Comput Biol. 2014 Mar;21(3):219-33. doi: 10.1089/cmb.2013.0129. Epub 2014 Feb 19.


Changes in Bachelor of Oral Health students' perceptions of their dental education environment.

Foster PL, Kang I, Anderson VR, Thomson WM, Meldrum AM, Moffat SM.

N Z Dent J. 2013 Dec;109(4):134-40.


On the mutational topology of the bacterial genome.

Foster PL, Hanson AJ, Lee H, Popodi EM, Tang H.

G3 (Bethesda). 2013 Mar;3(3):399-407. doi: 10.1534/g3.112.005355. Epub 2013 Mar 1.


Stress-Induced Mutagenesis.

Williams AB, Foster PL.

EcoSal Plus. 2012 Nov;5(1). doi: 10.1128/ecosalplus.7.2.3.


Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.

Lee H, Popodi E, Tang H, Foster PL.

Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):E2774-83. doi: 10.1073/pnas.1210309109. Epub 2012 Sep 18.


Double-Strand Break Repair and Holliday Junction Processing Are Required for Chromosome Processing in Stationary-Phase Escherichia coli Cells.

Williams AB, Hetrick KM, Foster PL.

G3 (Bethesda). 2011 Nov;1(6):417-26. doi: 10.1534/g3.111.001057. Epub 2011 Nov 1.


Roles of the Y-family DNA polymerase Dbh in accurate replication of the Sulfolobus genome at high temperature.

Sakofsky CJ, Foster PL, Grogan DW.

DNA Repair (Amst). 2012 Apr 1;11(4):391-400. doi: 10.1016/j.dnarep.2012.01.005. Epub 2012 Feb 4.


Comment on "A bacterium that can grow by using arsenic instead of phosphorus".

Foster PL.

Science. 2011 Jun 3;332(6034):1149; author reply 1149. doi: 10.1126/science.1201551. Epub 2011 May 27.


Escherichia coli Rep DNA helicase and error-prone DNA polymerase IV interact physically and functionally.

Sladewski TE, Hetrick KM, Foster PL.

Mol Microbiol. 2011 Apr;80(2):524-41. doi: 10.1111/j.1365-2958.2011.07590.x. Epub 2011 Mar 7.


The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli.

Storvik KA, Foster PL.

J Bacteriol. 2011 Feb;193(3):660-9. doi: 10.1128/JB.01166-10. Epub 2010 Dec 3.


Interplay of DNA repair, homologous recombination, and DNA polymerases in resistance to the DNA damaging agent 4-nitroquinoline-1-oxide in Escherichia coli.

Williams AB, Hetrick KM, Foster PL.

DNA Repair (Amst). 2010 Oct 5;9(10):1090-7. doi: 10.1016/j.dnarep.2010.07.008. Epub 2010 Aug 19.


RpoS, the stress response sigma factor, plays a dual role in the regulation of Escherichia coli's error-prone DNA polymerase IV.

Storvik KA, Foster PL.

J Bacteriol. 2010 Jul;192(14):3639-44. doi: 10.1128/JB.00358-10. Epub 2010 May 14.


Stress-induced mutagenesis in bacteria.

Foster PL.

Crit Rev Biochem Mol Biol. 2007 Sep-Oct;42(5):373-97. Review.


The Escherichia coli histone-like protein HU has a role in stationary phase adaptive mutation.

Williams AB, Foster PL.

Genetics. 2007 Oct;177(2):723-35. Epub 2007 Aug 24.


Amplification of lac cannot account for adaptive mutation to Lac+ in Escherichia coli.

Stumpf JD, Poteete AR, Foster PL.

J Bacteriol. 2007 Mar;189(6):2291-9. Epub 2007 Jan 5.


Methods for determining spontaneous mutation rates.

Foster PL.

Methods Enzymol. 2006;409:195-213.


Stress responses and genetic variation in bacteria.

Foster PL.

Mutat Res. 2005 Jan 6;569(1-2):3-11. Review.


Rebuttal: growth under selection stimulates Lac(+) reversion (Roth and Andersson).

Foster PL.

J Bacteriol. 2004 Aug;186(15):4861. No abstract available.


Adaptive mutation in Escherichia coli.

Foster PL.

J Bacteriol. 2004 Aug;186(15):4846-52. No abstract available.


Rebuttal: adaptive point mutation (Rosenberg and Hastings).

Foster PL.

J Bacteriol. 2004 Aug;186(15):4845. No abstract available.


The risk of lethals for hypermutating bacteria in stationary phase.

Cairns J, Foster PL.

Genetics. 2003 Dec;165(4):2317-8; author reply 2319-21. No abstract available.


The coordinated functions of the E. coli MutS and MutL proteins in mismatch repair.

Acharya S, Foster PL, Brooks P, Fishel R.

Mol Cell. 2003 Jul;12(1):233-46.


Adaptive mutation in Escherichia coli.

Foster PL.

Cold Spring Harb Symp Quant Biol. 2000;65:21-9. Review. No abstract available.


Error-prone polymerase, DNA polymerase IV, is responsible for transient hypermutation during adaptive mutation in Escherichia coli.

Tompkins JD, Nelson JL, Hazel JC, Leugers SL, Stumpf JD, Foster PL.

J Bacteriol. 2003 Jun;185(11):3469-72.


Induction of a DNA nickase in the presence of its target site stimulates adaptive mutation in Escherichia coli.

Rodriguez C, Tompkin J, Hazel J, Foster PL.

J Bacteriol. 2002 Oct;184(20):5599-608.


Phage lambda red-mediated adaptive mutation.

Poteete AR, Wang HR, Foster PL.

J Bacteriol. 2002 Jul;184(13):3753-5.


Effect of endogenous carotenoids on "adaptive" mutation in Escherichia coli FC40.

Bridges BA, Foster PL, Timms AR.

Mutat Res. 2001 Jan 25;473(1):109-19.


Adaptive mutation: implications for evolution.

Foster PL.

Bioessays. 2000 Dec;22(12):1067-74. Review.


Determining mutation rates in bacterial populations.

Rosche WA, Foster PL.

Methods. 2000 Jan;20(1):4-17. Review.


Sorting out mutation rates.

Foster PL.

Proc Natl Acad Sci U S A. 1999 Jul 6;96(14):7617-8. Review. No abstract available.


The role of transient hypermutators in adaptive mutation in Escherichia coli.

Rosche WA, Foster PL.

Proc Natl Acad Sci U S A. 1999 Jun 8;96(12):6862-7.


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