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Items: 19

1.

Enrichment of intestinal Lactobacillus by enhanced secretory IgA coating alters glucose homeostasis in P2rx7-/- mice.

Perruzza L, Strati F, Gargari G, D'Erchia AM, Fosso B, Pesole G, Guglielmetti S, Grassi F.

Sci Rep. 2019 Jun 27;9(1):9315. doi: 10.1038/s41598-019-45724-9.

2.

Habitat differentiation among three Nigeria-Cameroon chimpanzee (Pan troglodytes ellioti) populations.

Abwe EE, Morgan BJ, Tchiengue B, Kentatchime F, Doudja R, Ketchen ME, Teguia E, Ambahe R, Venditti DM, Mitchell MW, Fosso B, Mounga A, Fotso RC, Gonder MK.

Ecol Evol. 2019 Jan 10;9(3):1489-1500. doi: 10.1002/ece3.4871. eCollection 2019 Feb.

3.

Dynamic inosinome profiles reveal novel patient stratification and gender-specific differences in glioblastoma.

Silvestris DA, Picardi E, Cesarini V, Fosso B, Mangraviti N, Massimi L, Martini M, Pesole G, Locatelli F, Gallo A.

Genome Biol. 2019 Feb 13;20(1):33. doi: 10.1186/s13059-019-1647-x.

4.

Guns, germs, and trees determine density and distribution of gorillas and chimpanzees in Western Equatorial Africa.

Strindberg S, Maisels F, Williamson EA, Blake S, Stokes EJ, Aba'a R, Abitsi G, Agbor A, Ambahe RD, Bakabana PC, Bechem M, Berlemont A, Bokoto de Semboli B, Boundja PR, Bout N, Breuer T, Campbell G, De Wachter P, Ella Akou M, Esono Mba F, Feistner ATC, Fosso B, Fotso R, Greer D, Inkamba-Nkulu C, Iyenguet CF, Jeffery KJ, Kokangoye M, Kühl HS, Latour S, Madzoke B, Makoumbou C, Malanda GF, Malonga R, Mbolo V, Morgan DB, Motsaba P, Moukala G, Mowawa BS, Murai M, Ndzai C, Nishihara T, Nzooh Z, Pintea L, Pokempner A, Rainey HJ, Rayden T, Ruffler H, Sanz CM, Todd A, Vanleeuwe H, Vosper A, Warren Y, Wilkie DS.

Sci Adv. 2018 Apr 25;4(4):eaar2964. doi: 10.1126/sciadv.aar2964. eCollection 2018 Apr.

5.

Whole transcriptome profiling of Late-Onset Alzheimer's Disease patients provides insights into the molecular changes involved in the disease.

Annese A, Manzari C, Lionetti C, Picardi E, Horner DS, Chiara M, Caratozzolo MF, Tullo A, Fosso B, Pesole G, D'Erchia AM.

Sci Rep. 2018 Mar 9;8(1):4282. doi: 10.1038/s41598-018-22701-2.

6.

ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences.

Santamaria M, Fosso B, Licciulli F, Balech B, Larini I, Grillo G, De Caro G, Liuni S, Pesole G.

Nucleic Acids Res. 2018 Jan 4;46(D1):D127-D132. doi: 10.1093/nar/gkx855.

7.

Unbiased Taxonomic Annotation of Metagenomic Samples.

Fosso B, Pesole G, Rosselló F, Valiente G.

J Comput Biol. 2018 Mar;25(3):348-360. doi: 10.1089/cmb.2017.0144. Epub 2017 Oct 13.

8.

The metagenomic data life-cycle: standards and best practices.

Ten Hoopen P, Finn RD, Bongo LA, Corre E, Fosso B, Meyer F, Mitchell A, Pelletier E, Pesole G, Santamaria M, Willassen NP, Cochrane G.

Gigascience. 2017 Aug 1;6(8):1-11. doi: 10.1093/gigascience/gix047.

9.

T Follicular Helper Cells Promote a Beneficial Gut Ecosystem for Host Metabolic Homeostasis by Sensing Microbiota-Derived Extracellular ATP.

Perruzza L, Gargari G, Proietti M, Fosso B, D'Erchia AM, Faliti CE, Rezzonico-Jost T, Scribano D, Mauri L, Colombo D, Pellegrini G, Moregola A, Mooser C, Pesole G, Nicoletti M, Norata GD, Geuking MB, McCoy KD, Guglielmetti S, Grassi F.

Cell Rep. 2017 Mar 14;18(11):2566-2575. doi: 10.1016/j.celrep.2017.02.061.

10.

MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.

Fosso B, Santamaria M, D'Antonio M, Lovero D, Corrado G, Vizza E, Passaro N, Garbuglia AR, Capobianchi MR, Crescenzi M, Valiente G, Pesole G.

Bioinformatics. 2017 Jun 1;33(11):1730-1732. doi: 10.1093/bioinformatics/btx036.

11.

BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology.

Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, Fetyukova Y, Fosso B, Giddy J, Goble C, Güntsch A, Haines R, Ernst VH, Hettling H, Hidy D, Horváth F, Ittzés D, Ittzés P, Jones A, Kottmann R, Kulawik R, Leidenberger S, Lyytikäinen-Saarenmaa P, Mathew C, Morrison N, Nenadic A, de la Hidalga AN, Obst M, Oostermeijer G, Paymal E, Pesole G, Pinto S, Poigné A, Fernandez FQ, Santamaria M, Saarenmaa H, Sipos G, Sylla KH, Tähtinen M, Vicario S, Vos RA, Williams AR, Yilmaz P.

BMC Ecol. 2016 Oct 20;16(1):49.

12.

Complexity and Dynamics of the Winemaking Bacterial Communities in Berries, Musts, and Wines from Apulian Grape Cultivars through Time and Space.

Marzano M, Fosso B, Manzari C, Grieco F, Intranuovo M, Cozzi G, Mulè G, Scioscia G, Valiente G, Tullo A, Sbisà E, Pesole G, Santamaria M.

PLoS One. 2016 Jun 14;11(6):e0157383. doi: 10.1371/journal.pone.0157383. eCollection 2016.

13.

Intestinal microbiota sustains inflammation and autoimmunity induced by hypomorphic RAG defects.

Rigoni R, Fontana E, Guglielmetti S, Fosso B, D'Erchia AM, Maina V, Taverniti V, Castiello MC, Mantero S, Pacchiana G, Musio S, Pedotti R, Selmi C, Mora JR, Pesole G, Vezzoni P, Poliani PL, Grassi F, Villa A, Cassani B.

J Exp Med. 2016 Mar 7;213(3):355-75. doi: 10.1084/jem.20151116. Epub 2016 Feb 29.

14.

BALB/c and C57BL/6 Mice Differ in Polyreactive IgA Abundance, which Impacts the Generation of Antigen-Specific IgA and Microbiota Diversity.

Fransen F, Zagato E, Mazzini E, Fosso B, Manzari C, El Aidy S, Chiavelli A, D'Erchia AM, Sethi MK, Pabst O, Marzano M, Moretti S, Romani L, Penna G, Pesole G, Rescigno M.

Immunity. 2015 Sep 15;43(3):527-40. doi: 10.1016/j.immuni.2015.08.011. Epub 2015 Sep 8.

15.

Functional Integration of mRNA Translational Control Programs.

MacNicol MC, Cragle CE, Arumugam K, Fosso B, Pesole G, MacNicol AM.

Biomolecules. 2015 Jul 21;5(3):1580-99. doi: 10.3390/biom5031580. Review.

16.

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS.

Fosso B, Santamaria M, Marzano M, Alonso-Alemany D, Valiente G, Donvito G, Monaco A, Notarangelo P, Pesole G.

BMC Bioinformatics. 2015 Jul 1;16:203. doi: 10.1186/s12859-015-0595-z.

17.

Lactobacillus rossiae, a vitamin B12 producer, represents a metabolically versatile species within the Genus Lactobacillus.

De Angelis M, Bottacini F, Fosso B, Kelleher P, Calasso M, Di Cagno R, Ventura M, Picardi E, van Sinderen D, Gobbetti M.

PLoS One. 2014 Sep 29;9(9):e107232. doi: 10.1371/journal.pone.0107232. eCollection 2014.

18.

Devastating decline of forest elephants in central Africa.

Maisels F, Strindberg S, Blake S, Wittemyer G, Hart J, Williamson EA, Aba'a R, Abitsi G, Ambahe RD, Amsini F, Bakabana PC, Hicks TC, Bayogo RE, Bechem M, Beyers RL, Bezangoye AN, Boundja P, Bout N, Akou ME, Bene LB, Fosso B, Greengrass E, Grossmann F, Ikamba-Nkulu C, Ilambu O, Inogwabini BI, Iyenguet F, Kiminou F, Kokangoye M, Kujirakwinja D, Latour S, Liengola I, Mackaya Q, Madidi J, Madzoke B, Makoumbou C, Malanda GA, Malonga R, Mbani O, Mbendzo VA, Ambassa E, Ekinde A, Mihindou Y, Morgan BJ, Motsaba P, Moukala G, Mounguengui A, Mowawa BS, Ndzai C, Nixon S, Nkumu P, Nzolani F, Pintea L, Plumptre A, Rainey H, de Semboli BB, Serckx A, Stokes E, Turkalo A, Vanleeuwe H, Vosper A, Warren Y.

PLoS One. 2013;8(3):e59469. doi: 10.1371/journal.pone.0059469. Epub 2013 Mar 4.

19.

Reference databases for taxonomic assignment in metagenomics.

Santamaria M, Fosso B, Consiglio A, De Caro G, Grillo G, Licciulli F, Liuni S, Marzano M, Alonso-Alemany D, Valiente G, Pesole G.

Brief Bioinform. 2012 Nov;13(6):682-95. doi: 10.1093/bib/bbs036. Epub 2012 Jul 10. Review.

PMID:
22786784

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