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Engineered bacterium fuels evolution debate.

Forterre P, Gaia M, Violette DC.

Nature. 2019 Jul;571(7765):326. doi: 10.1038/d41586-019-02163-w. No abstract available.


Sequence motifs recognized by the casposon integrase of Aciduliprofundum boonei.

Béguin P, Chekli Y, Sezonov G, Forterre P, Krupovic M.

Nucleic Acids Res. 2019 Jul 9;47(12):6386-6395. doi: 10.1093/nar/gkz447.


Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species.

Mizuno CM, Prajapati B, Lucas-Staat S, Sime-Ngando T, Forterre P, Bamford DH, Prangishvili D, Krupovic M, Oksanen HM.

Environ Microbiol. 2019 Jun;21(6):2129-2147. doi: 10.1111/1462-2920.14604. Epub 2019 Apr 14.


Integrated mobile genetic elements in Thaumarchaeota.

Krupovic M, Makarova KS, Wolf YI, Medvedeva S, Prangishvili D, Forterre P, Koonin EV.

Environ Microbiol. 2019 Jun;21(6):2056-2078. doi: 10.1111/1462-2920.14564. Epub 2019 Mar 18.


Numerous cultivated and uncultivated viruses encode ribosomal proteins.

Mizuno CM, Guyomar C, Roux S, Lavigne R, Rodriguez-Valera F, Sullivan MB, Gillet R, Forterre P, Krupovic M.

Nat Commun. 2019 Feb 14;10(1):752. doi: 10.1038/s41467-019-08672-6.


Extracellular membrane vesicles in the three domains of life and beyond.

Gill S, Catchpole R, Forterre P.

FEMS Microbiol Rev. 2019 May 1;43(3):273-303. doi: 10.1093/femsre/fuy042.


Increase of positive supercoiling in a hyperthermophilic archaeon after UV irradiation.

Gorlas A, Catchpole R, Marguet E, Forterre P.

Extremophiles. 2019 Jan;23(1):141-149. doi: 10.1007/s00792-018-1068-x. Epub 2018 Nov 22.


Centennial celebration of the bacteriophage research.

Debarbieux L, Forterre P, Krupovic M, Kutateladze M, Prangishvili D.

Res Microbiol. 2018 Nov;169(9):479-480. doi: 10.1016/j.resmic.2018.10.001. Epub 2018 Nov 2. No abstract available.


Contribution of protein Gar1 to the RNA-guided and RNA-independent rRNA:Ψ-synthase activities of the archaeal Cbf5 protein.

Fujikane R, Behm-Ansmant I, Tillault AS, Loegler C, Igel-Bourguignon V, Marguet E, Forterre P, Branlant C, Motorin Y, Charpentier B.

Sci Rep. 2018 Sep 14;8(1):13815. doi: 10.1038/s41598-018-32164-0.


Greigite nanocrystals produced by hyperthermophilic archaea of Thermococcales order.

Gorlas A, Jacquemot P, Guigner JM, Gill S, Forterre P, Guyot F.

PLoS One. 2018 Aug 2;13(8):e0201549. doi: 10.1371/journal.pone.0201549. eCollection 2018.


Structure-function analysis of Sua5 protein reveals novel functional motifs required for the biosynthesis of the universal t6A tRNA modification.

Pichard-Kostuch A, Zhang W, Liger D, Daugeron MC, Létoquart J, Li de la Sierra-Gallay I, Forterre P, Collinet B, van Tilbeurgh H, Basta T.

RNA. 2018 Jul;24(7):926-938. doi: 10.1261/rna.066092.118. Epub 2018 Apr 12.


Asgard archaea do not close the debate about the universal tree of life topology.

Da Cunha V, Gaia M, Nasir A, Forterre P.

PLoS Genet. 2018 Mar 29;14(3):e1007215. doi: 10.1371/journal.pgen.1007215. eCollection 2018 Mar. No abstract available.


A series of new E. coli-Thermococcus shuttle vectors compatible with previously existing vectors.

Catchpole R, Gorlas A, Oberto J, Forterre P.

Extremophiles. 2018 Jul;22(4):591-598. doi: 10.1007/s00792-018-1019-6. Epub 2018 Mar 1.


History of CRISPR-Cas from Encounter with a Mysterious Repeated Sequence to Genome Editing Technology.

Ishino Y, Krupovic M, Forterre P.

J Bacteriol. 2018 Mar 12;200(7). pii: e00580-17. doi: 10.1128/JB.00580-17. Print 2018 Apr 1. Review.


Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.

Kazlauskas D, Sezonov G, Charpin N, Venclovas Č, Forterre P, Krupovic M.

J Mol Biol. 2018 Mar 2;430(5):737-750. doi: 10.1016/j.jmb.2017.11.014. Epub 2017 Dec 11.


The enigmatic archaeal virosphere.

Prangishvili D, Bamford DH, Forterre P, Iranzo J, Koonin EV, Krupovic M.

Nat Rev Microbiol. 2017 Nov 10;15(12):724-739. doi: 10.1038/nrmicro.2017.125. Review.


Primer-Independent DNA Synthesis by a Family B DNA Polymerase from Self-Replicating Mobile Genetic Elements.

Redrejo-Rodríguez M, Ordóñez CD, Berjón-Otero M, Moreno-González J, Aparicio-Maldonado C, Forterre P, Salas M, Krupovic M.

Cell Rep. 2017 Nov 7;21(6):1574-1587. doi: 10.1016/j.celrep.2017.10.039.


Plasmid vesicles mimicking virions.

Forterre P, Da Cunha V, Catchpole R.

Nat Microbiol. 2017 Oct;2(10):1340-1341. doi: 10.1038/s41564-017-0032-3. No abstract available.


Viruses in the 21st Century: From the Curiosity-Driven Discovery of Giant Viruses to New Concepts and Definition of Life.

Forterre P.

Clin Infect Dis. 2017 Aug 15;65(suppl_1):S74-S79. doi: 10.1093/cid/cix349.


Flipping chromosomes in deep-sea archaea.

Cossu M, Badel C, Catchpole R, Gadelle D, Marguet E, Barbe V, Forterre P, Oberto J.

PLoS Genet. 2017 Jun 19;13(6):e1006847. doi: 10.1371/journal.pgen.1006847. eCollection 2017 Jun.


Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes.

Da Cunha V, Gaia M, Gadelle D, Nasir A, Forterre P.

PLoS Genet. 2017 Jun 12;13(6):e1006810. doi: 10.1371/journal.pgen.1006810. eCollection 2017 Jun.


Diversity of bacteria and archaea from two shallow marine hydrothermal vents from Vulcano Island.

Antranikian G, Suleiman M, Schäfers C, Adams MWW, Bartolucci S, Blamey JM, Birkeland NK, Bonch-Osmolovskaya E, da Costa MS, Cowan D, Danson M, Forterre P, Kelly R, Ishino Y, Littlechild J, Moracci M, Noll K, Oshima T, Robb F, Rossi M, Santos H, Schönheit P, Sterner R, Thauer R, Thomm M, Wiegel J, Stetter KO.

Extremophiles. 2017 Jul;21(4):733-742. doi: 10.1007/s00792-017-0938-y. Epub 2017 May 10.


Casposon integration shows strong target site preference and recapitulates protospacer integration by CRISPR-Cas systems.

Béguin P, Charpin N, Koonin EV, Forterre P, Krupovic M.

Nucleic Acids Res. 2016 Dec 1;44(21):10367-10376. Epub 2016 Sep 20.


Eukaryotic-Like Virus Budding in Archaea.

Quemin ER, Chlanda P, Sachse M, Forterre P, Prangishvili D, Krupovic M.

MBio. 2016 Sep 13;7(5). pii: e01439-16. doi: 10.1128/mBio.01439-16.


DJ-1 family Maillard deglycases prevent acrylamide formation.

Richarme G, Marguet E, Forterre P, Ishino S, Ishino Y.

Biochem Biophys Res Commun. 2016 Sep 23;478(3):1111-6. doi: 10.1016/j.bbrc.2016.08.077. Epub 2016 Aug 13.


To be or not to be alive: How recent discoveries challenge the traditional definitions of viruses and life.

Forterre P.

Stud Hist Philos Biol Biomed Sci. 2016 Oct;59:100-8. doi: 10.1016/j.shpsc.2016.02.013. Epub 2016 Mar 18.


topIb, a phylogenetic hallmark gene of Thaumarchaeota encodes a functional eukaryote-like topoisomerase IB.

Dahmane N, Gadelle D, Delmas S, Criscuolo A, Eberhard S, Desnoues N, Collin S, Zhang H, Pommier Y, Forterre P, Sezonov G.

Nucleic Acids Res. 2016 Apr 7;44(6):2795-805. doi: 10.1093/nar/gkw097. Epub 2016 Feb 22.


Giant viruses and the origin of modern eukaryotes.

Forterre P, Gaïa M.

Curr Opin Microbiol. 2016 Jun;31:44-49. doi: 10.1016/j.mib.2016.02.001. Epub 2016 Mar 19. Review.


Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity.

Krupovic M, Shmakov S, Makarova KS, Forterre P, Koonin EV.

Genome Biol Evol. 2016 Jan 13;8(2):375-86. doi: 10.1093/gbe/evw006.


Analysis of metagenomic data reveals common features of halophilic viral communities across continents.

Roux S, Enault F, Ravet V, Colombet J, Bettarel Y, Auguet JC, Bouvier T, Lucas-Staat S, Vellet A, Prangishvili D, Forterre P, Debroas D, Sime-Ngando T.

Environ Microbiol. 2016 Mar;18(3):889-903. doi: 10.1111/1462-2920.13084. Epub 2015 Dec 10.


Special section on Molecular biology of Archaea.

Prangishvili D, Gribaldo S, Franzetti B, Forterre P.

Biochimie. 2015 Nov;118:253. doi: 10.1016/j.biochi.2015.09.020. Epub 2015 Sep 25. No abstract available.


Sulfolobus Spindle-Shaped Virus 1 Contains Glycosylated Capsid Proteins, a Cellular Chromatin Protein, and Host-Derived Lipids.

Quemin ER, Pietilä MK, Oksanen HM, Forterre P, Rijpstra WI, Schouten S, Bamford DH, Prangishvili D, Krupovic M.

J Virol. 2015 Nov;89(22):11681-91. doi: 10.1128/JVI.02270-15. Epub 2015 Sep 9.


The universal tree of life: an update.

Forterre P.

Front Microbiol. 2015 Jul 21;6:717. doi: 10.3389/fmicb.2015.00717. eCollection 2015. Review.


Sulfur vesicles from Thermococcales: A possible role in sulfur detoxifying mechanisms.

Gorlas A, Marguet E, Gill S, Geslin C, Guigner JM, Guyot F, Forterre P.

Biochimie. 2015 Nov;118:356-64. doi: 10.1016/j.biochi.2015.07.026. Epub 2015 Jul 30.


Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes.

Cossu M, Da Cunha V, Toffano-Nioche C, Forterre P, Oberto J.

Biochimie. 2015 Nov;118:313-21. doi: 10.1016/j.biochi.2015.07.008. Epub 2015 Jul 10.


Plasmids from Euryarchaeota.

Forterre P, Krupovic M, Raymann K, Soler N.

Microbiol Spectr. 2014 Dec;2(6). doi: 10.1128/microbiolspec.PLAS-0027-2014. Review.


An abyssal mobilome: viruses, plasmids and vesicles from deep-sea hydrothermal vents.

Lossouarn J, Dupont S, Gorlas A, Mercier C, Bienvenu N, Marguet E, Forterre P, Geslin C.

Res Microbiol. 2015 Dec;166(10):742-52. doi: 10.1016/j.resmic.2015.04.001. Epub 2015 Apr 22. Review.


Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes.

Krupovic M, Forterre P.

Ann N Y Acad Sci. 2015 Apr;1341:41-53. doi: 10.1111/nyas.12675. Epub 2015 Feb 11. Review.


Synergistic template-free synthesis of dsDNA by Thermococcus nautili primase PolpTN2, DNA polymerase PolB, and pTN2 helicase.

Béguin P, Gill S, Charpin N, Forterre P.

Extremophiles. 2015 Jan;19(1):69-76. doi: 10.1007/s00792-014-0706-1. Epub 2014 Nov 25.


Membrane vesicles in natural environments: a major challenge in viral ecology.

Soler N, Krupovic M, Marguet E, Forterre P.

ISME J. 2015 Mar 17;9(4):793-6. doi: 10.1038/ismej.2014.184. No abstract available.


Cellular domains and viral lineages.

Forterre P, Krupovic M, Prangishvili D.

Trends Microbiol. 2014 Oct;22(10):554-8. doi: 10.1016/j.tim.2014.07.004. Epub 2014 Aug 13.


Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes.

Makarova KS, Wolf YI, Forterre P, Prangishvili D, Krupovic M, Koonin EV.

Extremophiles. 2014 Sep;18(5):877-93. doi: 10.1007/s00792-014-0672-7. Epub 2014 Aug 12.


Cross kingdom functional conservation of the core universally conserved threonylcarbamoyladenosine tRNA synthesis enzymes.

Thiaville PC, El Yacoubi B, Perrochia L, Hecker A, Prigent M, Thiaville JJ, Forterre P, Namy O, Basta T, de Crécy-Lagard V.

Eukaryot Cell. 2014 Sep;13(9):1222-31. doi: 10.1128/EC.00147-14. Epub 2014 Jul 18.


DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria.

Gadelle D, Krupovic M, Raymann K, Mayer C, Forterre P.

Nucleic Acids Res. 2014 Jul;42(13):8578-91. doi: 10.1093/nar/gku568. Epub 2014 Jul 2.


The SF1 helicase encoded by the archaeal plasmid pTN2 of Thermococcus nautili.

Béguin P, Baron B, Gill S, Charpin N, Forterre P.

Extremophiles. 2014 Jul;18(4):779-87. doi: 10.1007/s00792-014-0658-5. Epub 2014 Jun 3.


Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.

Krupovic M, Makarova KS, Forterre P, Prangishvili D, Koonin EV.

BMC Biol. 2014 May 19;12:36. doi: 10.1186/1741-7007-12-36.


The distribution and impact of viral lineages in domains of life.

Nasir A, Forterre P, Kim KM, Caetano-Anollés G.

Front Microbiol. 2014 Apr 30;5:194. doi: 10.3389/fmicb.2014.00194. eCollection 2014. No abstract available.


Unique genome replication mechanism of the archaeal virus AFV1.

Pina M, Basta T, Quax TE, Joubert A, Baconnais S, Cortez D, Lambert S, Le Cam E, Bell SD, Forterre P, Prangishvili D.

Mol Microbiol. 2014 Jun;92(6):1313-25. doi: 10.1111/mmi.12630. Epub 2014 May 23.


Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles.

Oberto J, Gaudin M, Cossu M, Gorlas A, Slesarev A, Marguet E, Forterre P.

Genome Announc. 2014 Mar 27;2(2). pii: e00243-14. doi: 10.1128/genomeA.00243-14.


Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids.

Daum B, Quax TE, Sachse M, Mills DJ, Reimann J, Yildiz Ö, Häder S, Saveanu C, Forterre P, Albers SV, Kühlbrandt W, Prangishvili D.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3829-34. doi: 10.1073/pnas.1319245111. Epub 2014 Feb 24.

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