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Items: 15

1.

Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome.

Forsberg KJ, Bhatt IV, Schmidtke DT, Javanmardi K, Dillard KE, Stoddard BL, Finkelstein IJ, Kaiser BK, Malik HS.

Elife. 2019 Sep 10;8. pii: e46540. doi: 10.7554/eLife.46540.

2.

Publisher Correction: Shared strategies for β-lactam catabolism in the soil microbiome.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Nat Chem Biol. 2019 Feb;15(2):206. doi: 10.1038/s41589-018-0208-z.

PMID:
30591731
3.

Shared strategies for β-lactam catabolism in the soil microbiome.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Nat Chem Biol. 2018 Jun;14(6):556-564. doi: 10.1038/s41589-018-0052-1. Epub 2018 Apr 30. Erratum in: Nat Chem Biol. 2019 Feb;15(2):206.

4.

Microbial Genomics: The Expanding Universe of Bacterial Defense Systems.

Forsberg KJ, Malik HS.

Curr Biol. 2018 Apr 23;28(8):R361-R364. doi: 10.1016/j.cub.2018.02.053.

5.

Draft Genome Sequences of Three β-Lactam-Catabolizing Soil Proteobacteria.

Crofts TS, Wang B, Spivak A, Gianoulis TA, Forsberg KJ, Gibson MK, Johnsky LA, Broomall SM, Rosenzweig CN, Skowronski EW, Gibbons HS, Sommer MOA, Dantas G.

Genome Announc. 2017 Aug 10;5(32). pii: e00653-17. doi: 10.1128/genomeA.00653-17.

6.

Structural and Functional Survey of Environmental Aminoglycoside Acetyltransferases Reveals Functionality of Resistance Enzymes.

Xu Z, Stogios PJ, Quaile AT, Forsberg KJ, Patel S, Skarina T, Houliston S, Arrowsmith C, Dantas G, Savchenko A.

ACS Infect Dis. 2017 Sep 8;3(9):653-665. doi: 10.1021/acsinfecdis.7b00068. Epub 2017 Aug 16.

PMID:
28756664
7.

Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.

Yoneda A, Henson WR, Goldner NK, Park KJ, Forsberg KJ, Kim SJ, Pesesky MW, Foston M, Dantas G, Moon TS.

Nucleic Acids Res. 2016 Mar 18;44(5):2240-54. doi: 10.1093/nar/gkw055. Epub 2016 Feb 2.

8.

Identification of Genes Conferring Tolerance to Lignocellulose-Derived Inhibitors by Functional Selections in Soil Metagenomes.

Forsberg KJ, Patel S, Witt E, Wang B, Ellison TD, Dantas G.

Appl Environ Microbiol. 2015 Nov 6;82(2):528-37. doi: 10.1128/AEM.02838-15. Print 2016 Jan 15.

9.

The Tetracycline Destructases: A Novel Family of Tetracycline-Inactivating Enzymes.

Forsberg KJ, Patel S, Wencewicz TA, Dantas G.

Chem Biol. 2015 Jul 23;22(7):888-97. doi: 10.1016/j.chembiol.2015.05.017. Epub 2015 Jun 18.

10.

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology.

Gibson MK, Forsberg KJ, Dantas G.

ISME J. 2015 Jan;9(1):207-16. doi: 10.1038/ismej.2014.106. Epub 2014 Jul 8.

11.

Bacterial phylogeny structures soil resistomes across habitats.

Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G.

Nature. 2014 May 29;509(7502):612-6. doi: 10.1038/nature13377. Epub 2014 May 21.

12.

Pediatric fecal microbiota harbor diverse and novel antibiotic resistance genes.

Moore AM, Patel S, Forsberg KJ, Wang B, Bentley G, Razia Y, Qin X, Tarr PI, Dantas G.

PLoS One. 2013 Nov 13;8(11):e78822. doi: 10.1371/journal.pone.0078822. eCollection 2013.

13.

Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs.

Pehrsson EC, Forsberg KJ, Gibson MK, Ahmadi S, Dantas G.

Front Microbiol. 2013 Jun 7;4:145. doi: 10.3389/fmicb.2013.00145. eCollection 2013.

14.

The shared antibiotic resistome of soil bacteria and human pathogens.

Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MO, Dantas G.

Science. 2012 Aug 31;337(6098):1107-11. doi: 10.1126/science.1220761.

15.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

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