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Sonographic Evaluation of Genitourinary Inflammatory Pseudotumors and Its Mimics.

Forrest A, Numbere N, Jean-Gilles J, Dogra V.

Ultrasound Q. 2019 Jul 17. doi: 10.1097/RUQ.0000000000000468. [Epub ahead of print]


Expression levels of therapeutic targets as indicators of sensitivity to targeted therapeutics.

Roy R, Winteringham LN, Lassmann T, Forrest ARR.

Mol Cancer Ther. 2019 Aug 29. pii: molcanther.0273.2019. doi: 10.1158/1535-7163.MCT-19-0273. [Epub ahead of print]


Partnership or insanity: why do health partnerships do the same thing over and over again and expect a different result?

Perkins N, Hunter DJ, Visram S, Finn R, Gosling J, Adams L, Forrest A.

J Health Serv Res Policy. 2019 Aug 28:1355819619858374. doi: 10.1177/1355819619858374. [Epub ahead of print] No abstract available.


Molecular Mechanism of TMEM16A Regulation: Role of CaMKII and PP1/PP2A.

Ayon RJ, Hawn MB, Aoun J, Wiwchar M, Forrest AS, Cunningham F, Singer CA, Valencik ML, Greenwood IA, Leblanc N.

Am J Physiol Cell Physiol. 2019 Aug 28. doi: 10.1152/ajpcell.00059.2018. [Epub ahead of print]


Clinical Pharmacokinetics, Pharmacodynamics and Toxicodynamics of Polymyxins: Implications for Therapeutic Use.

Nation RL, Forrest A.

Adv Exp Med Biol. 2019;1145:219-249. doi: 10.1007/978-3-030-16373-0_15. Review.


Sensitization to immune checkpoint blockade through activation of a STAT1/NK axis in the tumor microenvironment.

Zemek RM, De Jong E, Chin WL, Schuster IS, Fear VS, Casey TH, Forbes C, Dart SJ, Leslie C, Zaitouny A, Small M, Boon L, Forrest ARR, Muiri DO, Degli-Esposti MA, Millward MJ, Nowak AK, Lassmann T, Bosco A, Lake RA, Lesterhuis WJ.

Sci Transl Med. 2019 Jul 17;11(501). pii: eaav7816. doi: 10.1126/scitranslmed.aav7816.


A systematic review of feasibility studies promoting the use of mobile technologies in clinical research.

Bakker JP, Goldsack JC, Clarke M, Coravos A, Geoghegan C, Godfrey A, Heasley MG, Karlin DR, Manta C, Peterson B, Ramirez E, Sheth N, Bruno A, Bullis E, Wareham K, Zimmerman N, Forrest A, Wood WA.

NPJ Digit Med. 2019 Jun 6;2:47. doi: 10.1038/s41746-019-0125-x. eCollection 2019.


Pharmacokinetic/Pharmacodynamic Evaluation of Solithromycin against Streptococcus pneumoniae Using Data from a Neutropenic Murine Lung Infection Model.

Okusanya OO, Forrest A, Bhavnani SM, Fernandes P, Ambrose PG, Andes DR.

Antimicrob Agents Chemother. 2019 Jul 25;63(8). pii: e02606-18. doi: 10.1128/AAC.02606-18. Print 2019 Aug.


High-power quantum-dot superluminescent tapered diode under CW operation.

Forrest AF, Krakowski M, Bardella P, Cataluna MA.

Opt Express. 2019 Apr 15;27(8):10981-10990. doi: 10.1364/OE.27.010981.


scMatch: a single-cell gene expression profile annotation tool using reference datasets.

Hou R, Denisenko E, Forrest ARR.

Bioinformatics. 2019 Apr 26. pii: btz292. doi: 10.1093/bioinformatics/btz292. [Epub ahead of print]


Developing and evaluating a tool to measure general practice productivity: a multimethod study.

Dawson J, Rigby-Brown A, Adams L, Baker R, Fernando J, Forrest A, Kirkwood A, Murray R, West M, Wike P, Wilde M.

Southampton (UK): NIHR Journals Library; 2019 Mar.


Myoglobinopathy is an adult-onset autosomal dominant myopathy with characteristic sarcoplasmic inclusions.

Olivé M, Engvall M, Ravenscroft G, Cabrera-Serrano M, Jiao H, Bortolotti CA, Pignataro M, Lambrughi M, Jiang H, Forrest ARR, Benseny-Cases N, Hofbauer S, Obinger C, Battistuzzi G, Bellei M, Borsari M, Di Rocco G, Viola HM, Hool LC, Cladera J, Lagerstedt-Robinson K, Xiang F, Wredenberg A, Miralles F, Baiges JJ, Malfatti E, Romero NB, Streichenberger N, Vial C, Claeys KG, Straathof CSM, Goris A, Freyer C, Lammens M, Bassez G, Kere J, Clemente P, Sejersen T, Udd B, Vidal N, Ferrer I, Edström L, Wedell A, Laing NG.

Nat Commun. 2019 Mar 27;10(1):1396. doi: 10.1038/s41467-019-09111-2.


Predicting Efavirenz Concentrations in the Brain Tissue of HIV-Infected Individuals and Exploring their Relationship to Neurocognitive Impairment.

Srinivas N, Joseph SB, Robertson K, Kincer LP, Menezes P, Adamson L, Schauer AP, Blake KH, White N, Sykes C, Luciw P, Eron JJ, Forrest A, Price RW, Spudich S, Swanstrom R, Kashuba ADM.

Clin Transl Sci. 2019 May;12(3):302-311. doi: 10.1111/cts.12620. Epub 2019 Feb 27.


Novel Polymyxin Combination with the Antiretroviral Zidovudine Exerts Synergistic Killing against NDM-Producing Multidrug-Resistant Klebsiella pneumoniae.

Lin YW, Abdul Rahim N, Zhao J, Han ML, Yu HH, Wickremasinghe H, Chen K, Wang J, Paterson DL, Zhu Y, Rao GG, Zhou QT, Forrest A, Velkov T, Li J.

Antimicrob Agents Chemother. 2019 Mar 27;63(4). pii: e02176-18. doi: 10.1128/AAC.02176-18. Print 2019 Apr.


A kinder remedy than excising the "surgeon ego" to accelerate progress in the culture of surgery.

Forrest AD, Smith MA.

BMJ. 2019 Jan 7;364:l57. doi: 10.1136/bmj.l57. No abstract available.


Antisense Transcription in Loci Associated to Hereditary Neurodegenerative Diseases.

Zucchelli S, Fedele S, Vatta P, Calligaris R, Heutink P, Rizzu P, Itoh M, Persichetti F, Santoro C, Kawaji H, Lassmann T, Hayashizaki Y, Carninci P, Forrest ARR; FANTOM Consortium, Gustincich S.

Mol Neurobiol. 2019 Aug;56(8):5392-5415. doi: 10.1007/s12035-018-1465-2. Epub 2019 Jan 4.


Macroevolutionary dynamics of nectar spurs, a key evolutionary innovation.

Fernández-Mazuecos M, Blanco-Pastor JL, Juan A, Carnicero P, Forrest A, Alarcón M, Vargas P, Glover BJ.

New Phytol. 2019 Apr;222(2):1123-1138. doi: 10.1111/nph.15654. Epub 2019 Jan 23.


Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.

Francescatto M, Lizio M, Philippens I, Pardo LM, Bontrop R, Sakai M, Watanabe S, Itoh M, Hasegawa A, Lassmann T, Severin J, Harshbarger J, Abugessaisa I, Kasukawa T, Carninci P, Hayashizaki Y, Forrest ARR, Kawaji H, Rizzu P, Heutink P.

Sci Data. 2018 Dec 11;5(1):2. doi: 10.1038/s41597-018-0003-4.


Definition and Validation of a Novel Metric of Erythropoiesis-Stimulating Agent Response in Hemodialysis Patients.

Meaney CJ, Karas S, Robinson B, Gaesser J, Forrest A, Krzyzanski W, Panesar M, Rao GG.

J Clin Pharmacol. 2019 Mar;59(3):418-426. doi: 10.1002/jcph.1330. Epub 2018 Nov 9.


Community treatment orders in England: review of usage from national data.

Bennett DM, Bailey AC, Forrest AD.

BJPsych Bull. 2018 Oct;42(5):218. doi: 10.1192/bjb.2018.65. No abstract available.


Bi-allelic mutations in MYL1 cause a severe congenital myopathy.

Ravenscroft G, Zaharieva IT, Bortolotti CA, Lambrughi M, Pignataro M, Borsari M, Sewry CA, Phadke R, Haliloglu G, Ong R, Goullée H, Whyte T, Consortium UK, Manzur A, Talim B, Kaya U, Osborn DPS, Forrest ARR, Laing NG, Muntoni F.

Hum Mol Genet. 2018 Dec 15;27(24):4263-4272. doi: 10.1093/hmg/ddy320.


Challenges and Solutions for Future Pharmacy Practice in the Era of Precision Medicine.

Dong OM, Howard RM, Church R, Cottrell M, Forrest A, Innocenti F, Mosedale M, Kashuba A, Gonzalez D, Wiltshire T.

Am J Pharm Educ. 2018 Aug;82(6):6652. doi: 10.5688/ajpe6652.


Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli.

Vacca A, Itoh M, Kawaji H, Arner E, Lassmann T, Daub CO, Carninci P, Forrest ARR, Hayashizaki Y; FANTOM Consortium, Aitken S, Semple CA.

Open Biol. 2018 Aug;8(8). pii: 180011. doi: 10.1098/rsob.180011.


Population Pharmacokinetic Analyses for Ertapenem in Subjects with a Wide Range of Body Sizes.

Lakota EA, Landersdorfer CB, Zhang L, Nafziger AN, Bertino JS Jr, Bhavnani SM, Forrest A.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e00784-18. doi: 10.1128/AAC.00784-18. Print 2018 Oct.


Detection of Tooth-Colored Restorative Materials for Forensic Purposes Based on Their Optical Properties: An In Vitro Comparative Study.

Kiran R, Chapman J, Tennant M, Forrest A, Walsh LJ.

J Forensic Sci. 2019 Jan;64(1):254-259. doi: 10.1111/1556-4029.13851. Epub 2018 Jul 10.


Basal channels drive active surface hydrology and transverse ice shelf fracture.

Dow CF, Lee WS, Greenbaum JS, Greene CA, Blankenship DD, Poinar K, Forrest AL, Young DA, Zappa CJ.

Sci Adv. 2018 Jun 13;4(6):eaao7212. doi: 10.1126/sciadv.aao7212. eCollection 2018 Jun.


Personalizing Polymyxin B Dosing Using an Adaptive Feedback Control Algorithm.

Lakota EA, Landersdorfer CB, Nation RL, Li J, Kaye KS, Rao GG, Forrest A.

Antimicrob Agents Chemother. 2018 Jun 26;62(7). pii: e00483-18. doi: 10.1128/AAC.00483-18. Print 2018 Jul.


Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

Roy S, Schmeier S, Kaczkowski B, Arner E, Alam T, Ozturk M, Tamgue O, Parihar SP, Kawaji H, Itoh M, Lassmann T, Carninci P, Hayashizaki Y, Forrest ARR, Guler R, Bajic VB, Brombacher F, Suzuki H.

Sci Rep. 2018 Apr 30;8(1):6758. doi: 10.1038/s41598-018-24509-6.


Trends in the incidence and outcome of paediatric out-of-hospital cardiac arrest: A 17-year observational study.

Nehme Z, Namachivayam S, Forrest A, Butt W, Bernard S, Smith K.

Resuscitation. 2018 Jul;128:43-50. doi: 10.1016/j.resuscitation.2018.04.030. Epub 2018 Apr 25.


Polymyxin B in Combination with Enrofloxacin Exerts Synergistic Killing against Extensively Drug-Resistant Pseudomonas aeruginosa.

Lin YW, Yu HH, Zhao J, Han ML, Zhu Y, Akter J, Wickremasinghe H, Walpola H, Wirth V, Rao GG, Forrest A, Velkov T, Li J.

Antimicrob Agents Chemother. 2018 May 25;62(6). pii: e00028-18. doi: 10.1128/AAC.00028-18. Print 2018 Jun.


Unravelling the molecular basis for regulatory T-cell plasticity and loss of function in disease.

Sadlon T, Brown CY, Bandara V, Hope CM, Schjenken JE, Pederson SM, Breen J, Forrest A, Beyer M, Robertson S, Barry SC.

Clin Transl Immunology. 2018 Feb 27;7(2):e1011. doi: 10.1002/cti2.1011. eCollection 2018. Review.


Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

Baillie JK, Bretherick A, Haley CS, Clohisey S, Gray A, Neyton LPA, Barrett J, Stahl EA, Tenesa A, Andersson R, Brown JB, Faulkner GJ, Lizio M, Schaefer U, Daub C, Itoh M, Kondo N, Lassmann T, Kawai J; IIBDGC Consortium, Mole D, Bajic VB, Heutink P, Rehli M, Kawaji H, Sandelin A, Suzuki H, Satsangi J, Wells CA, Hacohen N, Freeman TC, Hayashizaki Y, Carninci P, Forrest ARR, Hume DA.

PLoS Comput Biol. 2018 Mar 1;14(3):e1005934. doi: 10.1371/journal.pcbi.1005934. eCollection 2018 Mar.


The Clinical Trials Transformation Initiative: Methodology supporting the mission.

Corneli A, Hallinan Z, Hamre G, Perry B, Goldsack JC, Calvert SB, Forrest A.

Clin Trials. 2018 Feb;15(1_suppl):13-18. doi: 10.1177/1740774518755054.


Pyramidal cell-selective GluN1 knockout causes impairments in salience attribution and related EEG activity.

Forrest AD, Bang J, Featherstone RE, Bloom JH, Luminais MS, Zhang RV, Gajewski CR, McMullen MF, Liang Y, Siegel SJ.

Exp Brain Res. 2018 Mar;236(3):837-846. doi: 10.1007/s00221-017-5152-8. Epub 2018 Jan 19.


Correction to: Relatively frequent switching of transcription start sites during cerebellar development.

Zhang P, Dimont E, Ha T, Swanson DJ, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E; FANTOM Consortium, Carninci P, Hayashizaki Y, Forrest ARR, Hide W, Goldowitz D.

BMC Genomics. 2018 Jan 11;19(1):39. doi: 10.1186/s12864-017-4291-4.


Child Mortality In The US And 19 OECD Comparator Nations: A 50-Year Time-Trend Analysis.

Thakrar AP, Forrest AD, Maltenfort MG, Forrest CB.

Health Aff (Millwood). 2018 Jan;37(1):140-149. doi: 10.1377/hlthaff.2017.0767.


Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection.

Zhang PGY, Yeung J, Gupta I, Ramirez M, Ha T, Swanson DJ, Nagao-Sato S, Itoh M, Kawaji H, Lassmann T, Daub CO, Arner E, de Hoon M; FANTOM consortium, Carninci P, Forrest ARR, Hayashizaki Y, Goldowitz D.

Cerebellum. 2018 Jun;17(3):308-325. doi: 10.1007/s12311-017-0912-3.


Assessment and modelling of antibacterial combination regimens.

Rao GG, Li J, Garonzik SM, Nation RL, Forrest A.

Clin Microbiol Infect. 2018 Jul;24(7):689-696. doi: 10.1016/j.cmi.2017.12.004. Epub 2017 Dec 18. Review.


Mechanism-Based Pharmacokinetic/Pharmacodynamic Modeling of Aerosolized Colistin in a Mouse Lung Infection Model.

Lin YW, Zhou QT, Han ML, Onufrak NJ, Chen K, Wang J, Forrest A, Chan HK, Li J.

Antimicrob Agents Chemother. 2018 Feb 23;62(3). pii: e01965-17. doi: 10.1128/AAC.01965-17. Print 2018 Mar.


Elucidating the Pharmacokinetics/Pharmacodynamics of Aerosolized Colistin against Multidrug-Resistant Acinetobacter baumannii and Klebsiella pneumoniae in a Mouse Lung Infection Model.

Lin YW, Zhou QT, Han ML, Chen K, Onufrak NJ, Wang J, Turnidge JD, Howden BP, Forrest A, Chan HK, Li J.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e01790-17. doi: 10.1128/AAC.01790-17. Print 2018 Feb.


Monitoring transcription initiation activities in rat and dog.

Lizio M, Mukarram AK, Ohno M, Watanabe S, Itoh M, Hasegawa A, Lassmann T, Severin J, Harshbarger J, Abugessaisa I, Kasukawa T, Hon CC, Carninci P, Hayashizaki Y, Forrest ARR, Kawaji H.

Sci Data. 2017 Nov 28;4:170173. doi: 10.1038/sdata.2017.173.


Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system.

Francescatto M, Lizio M, Philippens I, Pardo LM, Bontrop R, Sakai M, Watanabe S, Itoh M, Hasegawa A, Lassmann T, Severin J, Harshbarger J, Abugessaisa I, Kasukawa T, Carninci P, Hayashizaki Y, Forrest ARR, Kawaji H, Rizzu P, Heutink P.

Sci Data. 2017 Oct 31;4:170163. doi: 10.1038/sdata.2017.163. Erratum in: Sci Data. 2018 Dec 11;5(1):2.


Reply to Corona and Cattaneo.

Nation RL, Garonzik SM, Thamlikitkul V, Giamarellos-Bourboulis EJ, Forrest A, Paterson DL, Li J, Silveira FP.

Clin Infect Dis. 2017 Sep 1;65(5):870-871. doi: 10.1093/cid/cix390. No abstract available.


Linking FANTOM5 CAGE peaks to annotations with CAGEscan.

Bertin N, Mendez M, Hasegawa A, Lizio M, Abugessaisa I, Severin J, Sakai-Ohno M, Lassmann T, Kasukawa T, Kawaji H, Hayashizaki Y, Forrest ARR, Carninci P, Plessy C.

Sci Data. 2017 Oct 3;4:170147. doi: 10.1038/sdata.2017.147.


Design of Selective Benzoxazepin PI3Kδ Inhibitors Through Control of Dihedral Angles.

Safina BS, Elliott RL, Forrest AK, Heald RA, Murray JM, Nonomiya J, Pang J, Salphati L, Seward EM, Staben ST, Ultsch M, Wei B, Yang W, Sutherlin DP.

ACS Med Chem Lett. 2017 Aug 25;8(9):936-940. doi: 10.1021/acsmedchemlett.7b00170. eCollection 2017 Sep 14.


Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes.

Qin XY, Hara M, Arner E, Kawaguchi Y, Inoue I, Tatsukawa H, Furutani Y, Nagatsuma K, Matsuura T, Wei F, Kikuchi J, Sone H, Daub C, Kawaji H, Lassmann T, Itoh M, Suzuki H, Carninci P, Hayashizaki Y; FANTOM consortium, Kokudo N, Forrest ARR, Kojima S.

EBioMedicine. 2017 Oct;24:257-266. doi: 10.1016/j.ebiom.2017.09.008. Epub 2017 Sep 12.


Pharmacokinetic/Toxicodynamic Analysis of Colistin-Associated Acute Kidney Injury in Critically Ill Patients.

Forrest A, Garonzik SM, Thamlikitkul V, Giamarellos-Bourboulis EJ, Paterson DL, Li J, Silveira FP, Nation RL.

Antimicrob Agents Chemother. 2017 Oct 24;61(11). pii: e01367-17. doi: 10.1128/AAC.01367-17. Print 2017 Nov.


Systematic analysis of transcription start sites in avian development.

Lizio M, Deviatiiarov R, Nagai H, Galan L, Arner E, Itoh M, Lassmann T, Kasukawa T, Hasegawa A, Ros MA, Hayashizaki Y, Carninci P, Forrest ARR, Kawaji H, Gusev O, Sheng G.

PLoS Biol. 2017 Sep 5;15(9):e2002887. doi: 10.1371/journal.pbio.2002887. eCollection 2017 Sep.


The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types.

Kawaji H, Kasukawa T, Forrest A, Carninci P, Hayashizaki Y.

Sci Data. 2017 Aug 29;4:170113. doi: 10.1038/sdata.2017.113.

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