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Items: 25

1.

Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol.

Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martín R, Gueimonde M, van Sinderen D, Margolles A, Ventura M.

PLoS One. 2013 Jul 15;8(7):e68739. doi: 10.1371/journal.pone.0068739. Print 2013.

2.

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions.

Turroni F, Serafini F, Foroni E, Duranti S, O'Connell Motherway M, Taverniti V, Mangifesta M, Milani C, Viappiani A, Roversi T, Sánchez B, Santoni A, Gioiosa L, Ferrarini A, Delledonne M, Margolles A, Piazza L, Palanza P, Bolchi A, Guglielmetti S, van Sinderen D, Ventura M.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11151-6. doi: 10.1073/pnas.1303897110. Epub 2013 Jun 17.

3.

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon.

Milani C, Duranti S, Lugli GA, Bottacini F, Strati F, Arioli S, Foroni E, Turroni F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2013 Jul;79(14):4304-15. doi: 10.1128/AEM.00984-13. Epub 2013 May 3.

4.

Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010.

Serafini F, Strati F, Ruas-Madiedo P, Turroni F, Foroni E, Duranti S, Milano F, Perotti A, Viappiani A, Guglielmetti S, Buschini A, Margolles A, van Sinderen D, Ventura M.

Anaerobe. 2013 Jun;21:9-17. doi: 10.1016/j.anaerobe.2013.03.003. Epub 2013 Mar 22.

PMID:
23523946
5.

Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach.

Duranti S, Turroni F, Milani C, Foroni E, Bottacini F, Dal Bello F, Ferrarini A, Delledonne M, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2013 Jan;79(1):336-46. doi: 10.1128/AEM.02467-12. Epub 2012 Oct 12.

6.

Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut.

Bottacini F, Milani C, Turroni F, Sánchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF, Margolles A, van Sinderen D, Ventura M.

PLoS One. 2012;7(9):e44229. doi: 10.1371/journal.pone.0044229. Epub 2012 Sep 20.

7.

A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.

Alvarez-Martin P, O'Connell Motherway M, Turroni F, Foroni E, Ventura M, van Sinderen D.

Appl Environ Microbiol. 2012 Oct;78(19):7032-41. doi: 10.1128/AEM.01776-12. Epub 2012 Jul 27.

8.

An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria.

Serafini F, Turroni F, Guglielmetti S, Gioiosa L, Foroni E, Sanghez V, Bartolomucci A, Motherway MO, Palanza P, van Sinderen D, Ventura M.

FEMS Microbiol Lett. 2012 Aug;333(2):146-52. doi: 10.1111/j.1574-6968.2012.02605.x. Epub 2012 Jun 19.

9.

Diversity of bifidobacteria within the infant gut microbiota.

Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M.

PLoS One. 2012;7(5):e36957. doi: 10.1371/journal.pone.0036957. Epub 2012 May 11.

10.

Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010.

Turroni F, Strati F, Foroni E, Serafini F, Duranti S, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2012 Jul;78(14):5002-12. doi: 10.1128/AEM.00629-12. Epub 2012 May 4.

11.

Complete genome sequence of Bifidobacterium animalis subsp. lactis BLC1.

Bottacini F, Dal Bello F, Turroni F, Milani C, Duranti S, Foroni E, Viappiani A, Strati F, Mora D, van Sinderen D, Ventura M.

J Bacteriol. 2011 Nov;193(22):6387-8. doi: 10.1128/JB.06079-11.

12.

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium.

Foroni E, Serafini F, Amidani D, Turroni F, He F, Bottacini F, O'Connell Motherway M, Viappiani A, Zhang Z, Rivetti C, van Sinderen D, Ventura M.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S16. doi: 10.1186/1475-2859-10-S1-S16. Epub 2011 Aug 30.

13.

Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR.

Turroni F, Foroni E, Montanini B, Viappiani A, Strati F, Duranti S, Ferrarini A, Delledonne M, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2011 Dec;77(24):8578-87. doi: 10.1128/AEM.06352-11. Epub 2011 Oct 14.

14.

Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis.

Turroni F, Foroni E, Serafini F, Viappiani A, Montanini B, Bottacini F, Ferrarini A, Bacchini PL, Rota C, Delledonne M, Ottonello S, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2011 Oct;77(20):7408-17. doi: 10.1128/AEM.05336-11. Epub 2011 Aug 19.

15.

Insights into physiological and genetic mupirocin susceptibility in bifidobacteria.

Serafini F, Bottacini F, Viappiani A, Baruffini E, Turroni F, Foroni E, Lodi T, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2011 May;77(9):3141-6. doi: 10.1128/AEM.02540-10. Epub 2011 Mar 18.

16.

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.

Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, Sánchez B, Bidossi A, Ferrarini A, Giubellini V, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Fitzgerald GF, Mills D, Margolles A, Kelly D, van Sinderen D, Ventura M.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19514-9. doi: 10.1073/pnas.1011100107. Epub 2010 Oct 25.

17.

Comparative genomics of the genus Bifidobacterium.

Bottacini F, Medini D, Pavesi A, Turroni F, Foroni E, Riley D, Giubellini V, Tettelin H, van Sinderen D, Ventura M.

Microbiology. 2010 Nov;156(Pt 11):3243-54. doi: 10.1099/mic.0.039545-0. Epub 2010 Jul 15.

PMID:
20634238
18.

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.

Turroni F, Foroni E, O'Connell Motherway M, Bottacini F, Giubellini V, Zomer A, Ferrarini A, Delledonne M, Zhang Z, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2010 May;76(10):3206-19. doi: 10.1128/AEM.02938-09. Epub 2010 Mar 26.

19.

Analyses of bifidobacterial prophage-like sequences.

Ventura M, Turroni F, Foroni E, Duranti S, Giubellini V, Bottacini F, van Sinderen D.

Antonie Van Leeuwenhoek. 2010 Jun;98(1):39-50. doi: 10.1007/s10482-010-9426-4. Epub 2010 Mar 15.

PMID:
20229290
20.

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity.

Ventura M, Turroni F, Zomer A, Foroni E, Giubellini V, Bottacini F, Canchaya C, Claesson MJ, He F, Mantzourani M, Mulas L, Ferrarini A, Gao B, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Gupta RS, Zhang Z, Beighton D, Fitzgerald GF, O'Toole PW, van Sinderen D.

PLoS Genet. 2009 Dec;5(12):e1000785. doi: 10.1371/journal.pgen.1000785. Epub 2009 Dec 24.

21.

Comparative analyses of prophage-like elements present in bifidobacterial genomes.

Ventura M, Turroni F, Lima-Mendez G, Foroni E, Zomer A, Duranti S, Giubellini V, Bottacini F, Horvath P, Barrangou R, Sela DA, Mills DA, van Sinderen D.

Appl Environ Microbiol. 2009 Nov;75(21):6929-36. doi: 10.1128/AEM.01112-09. Epub 2009 Sep 4.

22.

Microbiomic analysis of the bifidobacterial population in the human distal gut.

Turroni F, Marchesi JR, Foroni E, Gueimonde M, Shanahan F, Margolles A, van Sinderen D, Ventura M.

ISME J. 2009 Jun;3(6):745-51. doi: 10.1038/ismej.2009.19. Epub 2009 Mar 19.

PMID:
19295640
23.

Exploring the diversity of the bifidobacterial population in the human intestinal tract.

Turroni F, Foroni E, Pizzetti P, Giubellini V, Ribbera A, Merusi P, Cagnasso P, Bizzarri B, de'Angelis GL, Shanahan F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2009 Mar;75(6):1534-45. doi: 10.1128/AEM.02216-08. Epub 2009 Jan 23.

24.

Human gut microbiota and bifidobacteria: from composition to functionality.

Turroni F, Ribbera A, Foroni E, van Sinderen D, Ventura M.

Antonie Van Leeuwenhoek. 2008 Jun;94(1):35-50. doi: 10.1007/s10482-008-9232-4. Epub 2008 Mar 13. Review.

PMID:
18338233
25.

Comparative analyses of prophage-like elements present in two Lactococcus lactis strains.

Ventura M, Zomer A, Canchaya C, O'Connell-Motherway M, Kuipers O, Turroni F, Ribbera A, Foroni E, Buist G, Wegmann U, Shearman C, Gasson MJ, Fitzgerald GF, Kok J, van Sinderen D.

Appl Environ Microbiol. 2007 Dec;73(23):7771-80. Epub 2007 Oct 12.

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