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Items: 48

1.

Macroscopic models for networks of coupled biological oscillators.

Hannay KM, Forger DB, Booth V.

Sci Adv. 2018 Aug 3;4(8):e1701047. doi: 10.1126/sciadv.1701047. eCollection 2018 Aug.

2.

CK1δ/ε protein kinase primes the PER2 circadian phosphoswitch.

Narasimamurthy R, Hunt SR, Lu Y, Fustin JM, Okamura H, Partch CL, Forger DB, Kim JK, Virshup DM.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):5986-5991. doi: 10.1073/pnas.1721076115. Epub 2018 May 21.

3.

Testing frameworks for personalizing bipolar disorder.

Cochran AL, Schultz A, McInnis MG, Forger DB.

Transl Psychiatry. 2018 Feb 2;8(1):36. doi: 10.1038/s41398-017-0084-4.

4.

Multiplexing Visual Signals in the Suprachiasmatic Nuclei.

Stinchcombe AR, Mouland JW, Wong KY, Lucas RJ, Forger DB.

Cell Rep. 2017 Nov 7;21(6):1418-1425. doi: 10.1016/j.celrep.2017.10.045.

5.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

6.

Responses to Spatial Contrast in the Mouse Suprachiasmatic Nuclei.

Mouland JW, Stinchcombe AR, Forger DB, Brown TM, Lucas RJ.

Curr Biol. 2017 Jun 5;27(11):1633-1640.e3. doi: 10.1016/j.cub.2017.04.039. Epub 2017 May 18.

7.

Regulation of persistent sodium currents by glycogen synthase kinase 3 encodes daily rhythms of neuronal excitability.

Paul JR, DeWoskin D, McMeekin LJ, Cowell RM, Forger DB, Gamble KL.

Nat Commun. 2016 Nov 14;7:13470. doi: 10.1038/ncomms13470.

8.

Data-driven classification of bipolar I disorder from longitudinal course of mood.

Cochran AL, McInnis MG, Forger DB.

Transl Psychiatry. 2016 Oct 11;6(10):e912. doi: 10.1038/tp.2016.166.

9.

A global quantification of "normal" sleep schedules using smartphone data.

Walch OJ, Cochran A, Forger DB.

Sci Adv. 2016 May 6;2(5):e1501705. doi: 10.1126/sciadv.1501705. eCollection 2016 May.

10.

Neural Integration Underlying a Time-Compensated Sun Compass in the Migratory Monarch Butterfly.

Shlizerman E, Phillips-Portillo J, Forger DB, Reppert SM.

Cell Rep. 2016 Apr 26;15(4):683-691. doi: 10.1016/j.celrep.2016.03.057. Epub 2016 Apr 14.

11.

A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period.

Zhou M, Kim JK, Eng GW, Forger DB, Virshup DM.

Mol Cell. 2015 Oct 1;60(1):77-88. doi: 10.1016/j.molcel.2015.08.022.

12.

Characterizing and modeling the intrinsic light response of rat ganglion-cell photoreceptors.

Walch OJ, Zhang LS, Reifler AN, Dolikian ME, Forger DB, Wong KY.

J Neurophysiol. 2015 Nov;114(5):2955-66. doi: 10.1152/jn.00544.2015. Epub 2015 Sep 23.

13.

Collective phase response curves for heterogeneous coupled oscillators.

Hannay KM, Booth V, Forger DB.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022923. Epub 2015 Aug 24.

PMID:
26382491
14.

Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping.

DeWoskin D, Myung J, Belle MD, Piggins HD, Takumi T, Forger DB.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3911-9. doi: 10.1073/pnas.1420753112. Epub 2015 Jun 30.

15.

GABA-mediated repulsive coupling between circadian clock neurons in the SCN encodes seasonal time.

Myung J, Hong S, DeWoskin D, De Schutter E, Forger DB, Takumi T.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):E3920-9. doi: 10.1073/pnas.1421200112. Epub 2015 Jun 30.

16.

Characterizing spiking in noisy type II neurons.

Boďová K, Paydarfar D, Forger DB.

J Theor Biol. 2015 Jan 21;365:40-54. doi: 10.1016/j.jtbi.2014.09.041. Epub 2014 Oct 12. Erratum in: J Theor Biol. 2015 May 21;373:132.

17.

It is not the parts, but how they interact that determines the behaviour of circadian rhythms across scales and organisms.

DeWoskin D, Geng W, Stinchcombe AR, Forger DB.

Interface Focus. 2014 Jun 6;4(3):20130076. doi: 10.1098/rsfs.2013.0076.

18.

Optimal schedules of light exposure for rapidly correcting circadian misalignment.

Serkh K, Forger DB.

PLoS Comput Biol. 2014 Apr 10;10(4):e1003523. doi: 10.1371/journal.pcbi.1003523. eCollection 2014 Apr.

19.

Causes and consequences of hyperexcitation in central clock neurons.

Diekman CO, Belle MD, Irwin RP, Allen CN, Piggins HD, Forger DB.

PLoS Comput Biol. 2013;9(8):e1003196. doi: 10.1371/journal.pcbi.1003196. Epub 2013 Aug 22.

20.

Modeling and validating chronic pharmacological manipulation of circadian rhythms.

Kim JK, Forger DB, Marconi M, Wood D, Doran A, Wager T, Chang C, Walton KM.

CPT Pharmacometrics Syst Pharmacol. 2013 Jul 17;2:e57. doi: 10.1038/psp.2013.34.

21.

Modeling the effects of the circadian clock on cardiac electrophysiology.

Fotiadis P, Forger DB.

J Biol Rhythms. 2013 Feb;28(1):69-78. doi: 10.1177/0748730412469499.

PMID:
23382593
22.

A mechanism for robust circadian timekeeping via stoichiometric balance.

Kim JK, Forger DB.

Mol Syst Biol. 2012;8:630. doi: 10.1038/msb.2012.62.

23.

Ionic mechanism underlying optimal stimuli for neuronal excitation: role of Na+ channel inactivation.

Clay JR, Forger DB, Paydarfar D.

PLoS One. 2012;7(9):e45983. doi: 10.1371/journal.pone.0045983. Epub 2012 Sep 26.

24.

Circadian regulation of sleep-wake behaviour in nocturnal rats requires multiple signals from suprachiasmatic nucleus.

Fleshner M, Booth V, Forger DB, Diniz Behn CG.

Philos Trans A Math Phys Eng Sci. 2011 Oct 13;369(1952):3855-83. doi: 10.1098/rsta.2011.0085.

PMID:
21893532
25.

Optimal stimulus shapes for neuronal excitation.

Forger DB, Paydarfar D, Clay JR.

PLoS Comput Biol. 2011 Jul;7(7):e1002089. doi: 10.1371/journal.pcbi.1002089. Epub 2011 Jul 7.

26.

Signal processing in cellular clocks.

Forger DB.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4281-5. doi: 10.1073/pnas.1004720108. Epub 2011 Feb 28.

27.

Emergence of noise-induced oscillations in the central circadian pacemaker.

Ko CH, Yamada YR, Welsh DK, Buhr ED, Liu AC, Zhang EE, Ralph MR, Kay SA, Forger DB, Takahashi JS.

PLoS Biol. 2010 Oct 12;8(10):e1000513. doi: 10.1371/journal.pbio.1000513. Erratum in: PLoS Biol. 2010;8(10) doi: 10.1371/annotation/45e0bb8b-69bd-4ba0-bb9e-6641bce10fc6..

28.

Multiscale complexity in the mammalian circadian clock.

Yamada Y, Forger D.

Curr Opin Genet Dev. 2010 Dec;20(6):626-33. doi: 10.1016/j.gde.2010.09.006. Review.

29.

Daily electrical silencing in the mammalian circadian clock.

Belle MD, Diekman CO, Forger DB, Piggins HD.

Science. 2009 Oct 9;326(5950):281-4. doi: 10.1126/science.1169657.

30.

Clustering predicted by an electrophysiological model of the suprachiasmatic nucleus.

Diekman CO, Forger DB.

J Biol Rhythms. 2009 Aug;24(4):322-33. doi: 10.1177/0748730409337601.

PMID:
19625734
31.

Taking the lag out of jet lag through model-based schedule design.

Dean DA 2nd, Forger DB, Klerman EB.

PLoS Comput Biol. 2009 Jun;5(6):e1000418. doi: 10.1371/journal.pcbi.1000418. Epub 2009 Jun 19.

32.

Keeping the beat in the rising heat.

Virshup DM, Forger DB.

Cell. 2009 May 15;137(4):602-4. doi: 10.1016/j.cell.2009.04.051.

33.

A simple modification of the Hodgkin and Huxley equations explains type 3 excitability in squid giant axons.

Clay JR, Paydarfar D, Forger DB.

J R Soc Interface. 2008 Dec 6;5(29):1421-8. doi: 10.1098/rsif.2008.0166.

34.

Rate constants rather than biochemical mechanism determine behaviour of genetic clocks.

Conrad E, Mayo AE, Ninfa AJ, Forger DB.

J R Soc Interface. 2008 Aug 6;5 Suppl 1:S9-15. doi: 10.1098/rsif.2008.0046.focus.

35.

Reversible protein phosphorylation regulates circadian rhythms.

Virshup DM, Eide EJ, Forger DB, Gallego M, Harnish EV.

Cold Spring Harb Symp Quant Biol. 2007;72:413-20. doi: 10.1101/sqb.2007.72.048. Review.

PMID:
18419299
36.

Modeling the electrophysiology of suprachiasmatic nucleus neurons.

Sim CK, Forger DB.

J Biol Rhythms. 2007 Oct;22(5):445-53.

PMID:
17876065
37.

After hours keeps clock researchers CRYing Overtime.

Virshup DM, Forger DB.

Cell. 2007 Jun 1;129(5):857-9.

38.

Noisy inputs and the induction of on-off switching behavior in a neuronal pacemaker.

Paydarfar D, Forger DB, Clay JR.

J Neurophysiol. 2006 Dec;96(6):3338-48. Epub 2006 Sep 6.

39.

An opposite role for tau in circadian rhythms revealed by mathematical modeling.

Gallego M, Eide EJ, Woolf MF, Virshup DM, Forger DB.

Proc Natl Acad Sci U S A. 2006 Jul 11;103(28):10618-23. Epub 2006 Jul 3.

40.

Comparison of amplitude recovery dynamics of two limit cycle oscillator models of the human circadian pacemaker.

Indic P, Forger DB, St Hilaire MA, Dean DA 2nd, Brown EN, Kronauer RE, Klerman EB, Jewett ME.

Chronobiol Int. 2005;22(4):613-29.

41.

Stochastic simulation of the mammalian circadian clock.

Forger DB, Peskin CS.

Proc Natl Acad Sci U S A. 2005 Jan 11;102(2):321-4. Epub 2004 Dec 30.

42.

Model based conjectures on mammalian clock controversies.

Forger DB, Peskin CS.

J Theor Biol. 2004 Oct 21;230(4):533-9.

PMID:
15363674
43.

Starting, stopping, and resetting biological oscillators: in search of optimum perturbations.

Forger DB, Paydarfar D.

J Theor Biol. 2004 Oct 21;230(4):521-32.

PMID:
15363673
44.

Development and validation of computational models for mammalian circadian oscillators.

Forger DB, Dean DA 2nd, Gurdziel K, Leloup JC, Lee C, Von Gall C, Etchegaray JP, Kronauer RE, Goldbeter A, Peskin CS, Jewett ME, Weaver DR.

OMICS. 2003 Winter;7(4):387-400.

PMID:
14683611
45.

A detailed predictive model of the mammalian circadian clock.

Forger DB, Peskin CS.

Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14806-11. Epub 2003 Dec 1.

46.

A simpler model of the human circadian pacemaker.

Forger DB, Jewett ME, Kronauer RE.

J Biol Rhythms. 1999 Dec;14(6):532-7.

PMID:
10643750
47.

Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range.

Kronauer RE, Forger DB, Jewett ME.

J Biol Rhythms. 1999 Dec;14(6):500-15. Review. Erratum in: J Biol Rhythms 2000 Apr;15(2):184-6.

PMID:
10643747
48.

Revised limit cycle oscillator model of human circadian pacemaker.

Jewett ME, Forger DB, Kronauer RE.

J Biol Rhythms. 1999 Dec;14(6):493-9. Review.

PMID:
10643746

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