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Items: 44

1.

micrIO: an open-source autosampler and fraction collector for automated microfluidic input-output.

Longwell SA, Fordyce PM.

Lab Chip. 2019 Nov 8. doi: 10.1039/c9lc00512a. [Epub ahead of print]

PMID:
31701110
2.

Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions.

Ghosh RP, Shi Q, Yang L, Reddick MP, Nikitina T, Zhurkin VB, Fordyce P, Stasevich TJ, Chang HY, Greenleaf WJ, Liphardt JT.

Nat Commun. 2019 Jul 19;10(1):3221. doi: 10.1038/s41467-019-11118-8.

3.

Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads.

Nguyen HQ, Roy J, Harink B, Damle NP, Latorraca NR, Baxter BC, Brower K, Longwell SA, Kortemme T, Thorn KS, Cyert MS, Fordyce PM.

Elife. 2019 Jul 8;8. pii: e40499. doi: 10.7554/eLife.40499.

4.

Live imaging of Aiptasia larvae, a model system for coral and anemone bleaching, using a simple microfluidic device.

Van Treuren W, Brower KK, Labanieh L, Hunt D, Lensch S, Cruz B, Cartwright HN, Tran C, Fordyce PM.

Sci Rep. 2019 Jun 25;9(1):9275. doi: 10.1038/s41598-019-45167-2.

5.

Ethical dilemmas in clinical practice: a perspective on the results of an electronic survey of veterinary anaesthetists.

Lehnus KS, Fordyce PS, McMillan MW.

Vet Anaesth Analg. 2019 May;46(3):260-275. doi: 10.1016/j.vaa.2018.11.006. Epub 2019 Jan 18. Review.

PMID:
30952440
6.

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs).

Harink B, Nguyen H, Thorn K, Fordyce P.

PLoS One. 2019 Mar 22;14(3):e0203725. doi: 10.1371/journal.pone.0203725. eCollection 2019.

7.

Diversification of DNA binding specificities enabled SREBP transcription regulators to expand the repertoire of cellular functions that they govern in fungi.

Del Olmo Toledo V, Puccinelli R, Fordyce PM, Pérez JC.

PLoS Genet. 2018 Dec 31;14(12):e1007884. doi: 10.1371/journal.pgen.1007884. eCollection 2018 Dec.

8.

BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing.

Aditham AK, Shimko TC, Fordyce PM.

Methods Cell Biol. 2018;148:229-250. doi: 10.1016/bs.mcb.2018.09.011. Epub 2018 Oct 23.

PMID:
30473071
9.

Discovering epistatic feature interactions from neural network models of regulatory DNA sequences.

Greenside P, Shimko T, Fordyce P, Kundaje A.

Bioinformatics. 2018 Sep 1;34(17):i629-i637. doi: 10.1093/bioinformatics/bty575.

10.

An Open-Source, Programmable Pneumatic Setup for Operation and Automated Control of Single- and Multi-Layer Microfluidic Devices.

Brower K, Puccinelli R, Markin CJ, Shimko TC, Longwell SA, Cruz B, Gomez-Sjoberg R, Fordyce PM.

HardwareX. 2018 Apr;3:117-134. doi: 10.1016/j.ohx.2017.10.001. Epub 2017 Oct 31.

11.

High-throughput chromatin accessibility profiling at single-cell resolution.

Mezger A, Klemm S, Mann I, Brower K, Mir A, Bostick M, Farmer A, Fordyce P, Linnarsson S, Greenleaf W.

Nat Commun. 2018 Sep 7;9(1):3647. doi: 10.1038/s41467-018-05887-x.

12.

Joker de Bruijn: Sequence Libraries to Cover All k-mers Using Joker Characters.

Orenstein Y, Kim R, Fordyce P, Berger B.

Res Comput Mol Biol. 2017 May;10229:389-390. doi: 10.1007/978-3-319-56970-3. No abstract available.

13.

Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.

Le DD, Shimko TC, Aditham AK, Keys AM, Longwell SA, Orenstein Y, Fordyce PM.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3702-E3711. doi: 10.1073/pnas.1715888115. Epub 2018 Mar 27.

14.

Optimized Sequence Library Design for Efficient In Vitro Interaction Mapping.

Orenstein Y, Puccinelli R, Kim R, Fordyce P, Berger B.

Cell Syst. 2017 Sep 27;5(3):230-236.e5. doi: 10.1016/j.cels.2017.07.006.

15.

Programmable Microfluidic Synthesis of Over One Thousand Uniquely Identifiable Spectral Codes.

Nguyen HQ, Baxter BC, Brower K, Diaz-Botia CA, DeRisi JL, Fordyce PM, Thorn KS.

Adv Opt Mater. 2017 Feb 2;5(3). pii: 1600548. doi: 10.1002/adom.201600548. Epub 2016 Oct 18.

17.

Multi-step Variable Height Photolithography for Valved Multilayer Microfluidic Devices.

Brower K, White AK, Fordyce PM.

J Vis Exp. 2017 Jan 27;(119). doi: 10.3791/55276.

18.

Mapping discussion of canine obesity between veterinary surgeons and dog owners: a provisional study.

Cairns-Haylor T, Fordyce P.

Vet Rec. 2017 Feb 11;180(6):149. doi: 10.1136/vr.103878. Epub 2016 Dec 16.

PMID:
27986895
19.

Nature and governance of veterinary clinical research conducted in the UK.

Fordyce P, Mullan S.

Vet Rec. 2017 Jan 21;180(3):69. doi: 10.1136/vr.103808. Epub 2016 Nov 30.

PMID:
27903939
20.

Correction: Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2015 Feb 21;15(4):1213. doi: 10.1039/c5lc90018b.

PMID:
25619960
21.

How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes.

Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD.

Genes Dev. 2014 Jun 15;28(12):1272-7. doi: 10.1101/gad.242271.114. Epub 2014 May 29.

22.

Hydraulic expulsion of tumbu fly larvae.

Dybbro E, Fordyce P, Ponte M, Arron ST.

JAMA Dermatol. 2014 Jul;150(7):791-2. No abstract available.

PMID:
24647598
23.

Comparison of surgical duration of canine ovariectomy and ovariohysterectomy in a veterinary teaching hospital.

Harris KP, Adams VJ, Fordyce P, Ladlow J.

J Small Anim Pract. 2013 Nov;54(11):579-83. doi: 10.1111/jsap.12147.

PMID:
24580014
24.

Structure of the transcriptional network controlling white-opaque switching in Candida albicans.

Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD.

Mol Microbiol. 2013 Oct;90(1):22-35. doi: 10.1111/mmi.12329. Epub 2013 Aug 25.

25.

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.

Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL.

Nucleic Acids Res. 2013 Jul;41(12):5991-6004. doi: 10.1093/nar/gkt259. Epub 2013 Apr 26.

26.

Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains.

Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7660-5. doi: 10.1073/pnas.1221734110. Epub 2013 Apr 22.

27.

Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses.

Fordyce PM, Pincus D, Kimmig P, Nelson CS, El-Samad H, Walter P, DeRisi JL.

Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):E3084-93. doi: 10.1073/pnas.1212457109. Epub 2012 Oct 10.

28.

Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2012 Nov 21;12(22):4716-23. doi: 10.1039/c2lc40699c. Erratum in: Lab Chip. 2015 Feb 21;15(4):1213.

PMID:
23042484
29.

Systematic characterization of feature dimensions and closing pressures for microfluidic valves produced via photoresist reflow.

Fordyce PM, Diaz-Botia CA, DeRisi JL, Gomez-Sjoberg R.

Lab Chip. 2012 Nov 7;12(21):4287-95. doi: 10.1039/c2lc40414a.

PMID:
22930180
30.

Welfare and quality assurance schemes.

Fordyce P.

Vet Rec. 2011 Sep 24;169(13):344. doi: 10.1136/vr.d6026. No abstract available.

PMID:
21949208
31.

Integrating systems biology data to yield functional genomics insights.

Fordyce P, Ingolia N.

Genome Biol. 2011;12(1):302. doi: 10.1186/gb-2011-12-1-302. Epub 2011 Jan 19.

32.

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis.

Fordyce PM, Gerber D, Tran D, Zheng J, Li H, DeRisi JL, Quake SR.

Nat Biotechnol. 2010 Sep;28(9):970-5. doi: 10.1038/nbt.1675. Epub 2010 Aug 29.

33.

Eg5 steps it up!

Valentine MT, Fordyce PM, Block SM.

Cell Div. 2006 Dec 15;1:31.

34.

Standardising bull breeding soundness evaluations and reporting in Australia.

Fordyce G, Entwistle K, Norman S, Perry V, Gardiner B, Fordyce P.

Theriogenology. 2006 Sep 15;66(5):1140-8. Epub 2006 Apr 18.

PMID:
16620941
35.

Individual dimers of the mitotic kinesin motor Eg5 step processively and support substantial loads in vitro.

Valentine MT, Fordyce PM, Krzysiak TC, Gilbert SP, Block SM.

Nat Cell Biol. 2006 May;8(5):470-6. Epub 2006 Apr 2.

36.

Simultaneous, coincident optical trapping and single-molecule fluorescence.

Lang MJ, Fordyce PM, Engh AM, Neuman KC, Block SM.

Nat Methods. 2004 Nov;1(2):133-9. Epub 2004 Oct 21.

37.

Combined optical trapping and single-molecule fluorescence.

Lang MJ, Fordyce PM, Block SM.

J Biol. 2003;2(1):6. Epub 2003 Feb 24.

38.

Stepping and stretching. How kinesin uses internal strain to walk processively.

Rosenfeld SS, Fordyce PM, Jefferson GM, King PH, Block SM.

J Biol Chem. 2003 May 16;278(20):18550-6. Epub 2003 Mar 6.

39.

Search for the decay KL --> pi(0)e+e-.

Alavi-Harati A, Albuquerque IF, Alexopoulos T, Arenton M, Arisaka K, Averitte S, Barker AR, Bellantoni L, Bellavance A, Belz J, Ben-David R, Bergman DR, Blucher E, Bock GJ, Bown C, Bright S, Cheu E, Childress S, Coleman R, Corcoran MD, Corti G, Cox B, Crisler MB, Erwin AR, Ford R, Fordyce PM, Glazov A, Golossanov A, Graham G, Graham J, Hagan K, Halkiadakis E, Hanagaki K, Hidaka S, Hsiung YB, Jejer V, Jennings J, Jensen DA, Kessler R, Kobrak HG, LaDue J, Lath A, Ledovskoy A, McBride PL, McManus AP, Mikelsons P, Monnier E, Nakaya T, Nelson KS, Nguyen H, O'Dell V, Pang M, Pordes R, Prasad V, Qiao C, Quinn B, Ramberg EJ, Ray RE, Roodman A, Sadamoto M, Schnetzer S, Senyo K, Shanahan P, Shawhan PS, Slater W, Solomey N, Somalwar SV, Stone RL, Suzuki I, Swallow EC, Swanson RA, Taegar SA, Tesarek RJ, Thomson GB, Toale PA, Tripathi A, Tschirhart R, Wah YW, Wang J, White HB, Whitmore J, Winstein B, Winston R, Yamanaka T, Zimmerman ED.

Phys Rev Lett. 2001 Jan 15;86(3):397-401.

PMID:
11177840
40.

Neuritis of the cauda equina in the horse.

Wright JA, Fordyce P, Edington N.

J Comp Pathol. 1987 Nov;97(6):667-75.

PMID:
3443690
41.

Use of an ELISA in the differential diagnosis of cauda equina neuritis and other equine neuropathies.

Fordyce PS, Edington N, Bridges GC, Wright JA, Edwards GB.

Equine Vet J. 1987 Jan;19(1):55-9.

PMID:
2446863
42.
43.

Rhinovirus plaque formation in WI-38 cells with methylcellulose overlay.

Dolan TM, Fenters JD, Fordyce PA, Holper JC.

Appl Microbiol. 1968 Sep;16(9):1331-6.

44.

Propagation of Rhinovirus on WI-38 Cell Monolayers in Rolling Bottles.

Fenters JD, Fordyce PA, Gerin JL, Holper JC.

Appl Microbiol. 1967 Nov;15(6):1460-4.

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