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Items: 31

1.

Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures.

Buckley C, Beatson SA, Limnios A, Lahra MM, Whiley DM, Forde BM.

Sex Health. 2019 Sep 4. doi: 10.1071/SH19012. [Epub ahead of print]

PMID:
31481151
2.

Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection.

Forde BM, Roberts LW, Phan MD, Peters KM, Fleming BA, Russell CW, Lenherr SM, Myers JB, Barker AP, Fisher MA, Chong TM, Yin WF, Chan KG, Schembri MA, Mulvey MA, Beatson SA.

Nat Commun. 2019 Aug 13;10(1):3643. doi: 10.1038/s41467-019-11571-5.

3.

SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia.

Forde BM, McAllister LJ, Paton JC, Paton AW, Beatson SA.

Sci Rep. 2019 Jul 1;9(1):9436. doi: 10.1038/s41598-019-45760-5.

4.

Novel insights into pasteurellosis in captive pinnipeds.

Crawford RL, Blyde D, Blackall PJ, Forde BM, Beatson SA, Harris LM, Turni C, Omaleki L.

Vet Microbiol. 2019 Apr;231:232-237. doi: 10.1016/j.vetmic.2019.03.017. Epub 2019 Mar 14.

PMID:
30955815
5.

Detection of Epidemic Scarlet Fever Group A Streptococcus in Australia.

Walker MJ, Brouwer S, Forde BM, Worthing KA, McIntyre L, Sundac L, Maloney S, Roberts LW, Barnett TC, Richter J, Cork AJ, Irwin AD, You Y, Zhang J, Dougan G, Yuen KY, Nizet V, Beatson SA, Grimwood K, Davies MR.

Clin Infect Dis. 2019 Sep 13;69(7):1232-1234. doi: 10.1093/cid/ciz099.

PMID:
30721938
6.

Discovery of mcr-1-Mediated Colistin Resistance in a Highly Virulent Escherichia coli Lineage.

Forde BM, Zowawi HM, Harris PNA, Roberts L, Ibrahim E, Shaikh N, Deshmukh A, Sid Ahmed MA, Al Maslamani M, Cottrell K, Trembizki E, Sundac L, Yu HH, Li J, Schembri MA, Whiley DM, Paterson DL, Beatson SA.

mSphere. 2018 Oct 10;3(5). pii: e00486-18. doi: 10.1128/mSphere.00486-18.

7.

Discovery of New Genes Involved in Curli Production by a Uropathogenic Escherichia coli Strain from the Highly Virulent O45:K1:H7 Lineage.

Nhu NTK, Phan MD, Peters KM, Lo AW, Forde BM, Min Chong T, Yin WF, Chan KG, Chromek M, Brauner A, Chapman MR, Beatson SA, Schembri MA.

MBio. 2018 Aug 21;9(4). pii: e01462-18. doi: 10.1128/mBio.01462-18.

8.

Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia.

Buckley C, Forde BM, Trembizki E, Lahra MM, Beatson SA, Whiley DM.

Sci Rep. 2018 Jan 24;8(1):1503. doi: 10.1038/s41598-018-20015-x.

9.

Modifications in the pmrB gene are the primary mechanism for the development of chromosomally encoded resistance to polymyxins in uropathogenic Escherichia coli.

Phan MD, Nhu NTK, Achard MES, Forde BM, Hong KW, Chong TM, Yin WF, Chan KG, West NP, Walker MJ, Paterson DL, Beatson SA, Schembri MA.

J Antimicrob Chemother. 2017 Oct 1;72(10):2729-2736. doi: 10.1093/jac/dkx204.

PMID:
29091192
10.

Genome-Wide Discovery of Genes Required for Capsule Production by Uropathogenic Escherichia coli.

Goh KGK, Phan MD, Forde BM, Chong TM, Yin WF, Chan KG, Ulett GC, Sweet MJ, Beatson SA, Schembri MA.

MBio. 2017 Oct 24;8(5). pii: e01558-17. doi: 10.1128/mBio.01558-17.

11.

Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391.

Sullivan MJ, Forde BM, Prince DW, Ipe DS, Ben Zakour NL, Davies MR, Dougan G, Beatson SA, Ulett GC.

Genome Announc. 2017 Oct 19;5(42). pii: e01107-17. doi: 10.1128/genomeA.01107-17.

12.

Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multilocus Sequence Typing Scheme.

Hancock SJ, Phan MD, Peters KM, Forde BM, Chong TM, Yin WF, Chan KG, Paterson DL, Walsh TR, Beatson SA, Schembri MA.

Antimicrob Agents Chemother. 2017 Jan 24;61(2). pii: e01740-16. doi: 10.1128/AAC.01740-16. Print 2017 Feb.

13.

Correction for Clancy et al., Draft Genome Sequences of Helicobacter pylori Strains 17874 and P79.

Clancy CD, Forde BM, Moore SA, O'Toole PW.

J Bacteriol. 2016 Jun 13;198(13):1902. doi: 10.1128/JB.00307-16. Print 2016 Jul 1. No abstract available.

14.

Mechanisms Involved in Acquisition of blaNDM Genes by IncA/C2 and IncFIIY Plasmids.

Wailan AM, Sidjabat HE, Yam WK, Alikhan NF, Petty NK, Sartor AL, Williamson DA, Forde BM, Schembri MA, Beatson SA, Paterson DL, Walsh TR, Partridge SR.

Antimicrob Agents Chemother. 2016 Jun 20;60(7):4082-8. doi: 10.1128/AAC.00368-16. Print 2016 Jul.

15.

Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 Clone.

Forde BM, Phan MD, Gawthorne JA, Ashcroft MM, Stanton-Cook M, Sarkar S, Peters KM, Chan KG, Chong TM, Yin WF, Upton M, Schembri MA, Beatson SA.

MBio. 2015 Nov 17;6(6):e01602-15. doi: 10.1128/mBio.01602-15.

16.

Transfer of scarlet fever-associated elements into the group A Streptococcus M1T1 clone.

Ben Zakour NL, Davies MR, You Y, Chen JH, Forde BM, Stanton-Cook M, Yang R, Cui Y, Barnett TC, Venturini C, Ong CL, Tse H, Dougan G, Zhang J, Yuen KY, Beatson SA, Walker MJ.

Sci Rep. 2015 Nov 2;5:15877. doi: 10.1038/srep15877.

17.

Stepwise evolution of pandrug-resistance in Klebsiella pneumoniae.

Zowawi HM, Forde BM, Alfaresi M, Alzarouni A, Farahat Y, Chong TM, Yin WF, Chan KG, Li J, Schembri MA, Beatson SA, Paterson DL.

Sci Rep. 2015 Oct 19;5:15082. doi: 10.1038/srep15082.

18.

Molecular Characterization of the Multidrug Resistant Escherichia coli ST131 Clone.

Schembri MA, Zakour NL, Phan MD, Forde BM, Stanton-Cook M, Beatson SA.

Pathogens. 2015 Jun 26;4(3):422-30. doi: 10.3390/pathogens4030422. Review.

19.

Molecular characterization of a multidrug resistance IncF plasmid from the globally disseminated Escherichia coli ST131 clone.

Phan MD, Forde BM, Peters KM, Sarkar S, Hancock S, Stanton-Cook M, Ben Zakour NL, Upton M, Beatson SA, Schembri MA.

PLoS One. 2015 Apr 15;10(4):e0122369. doi: 10.1371/journal.pone.0122369. eCollection 2015.

20.

Third-generation cephalosporin resistance conferred by a chromosomally encoded blaCMY-23 gene in the Escherichia coli ST131 reference strain EC958.

Phan MD, Peters KM, Sarkar S, Forde BM, Lo AW, Stanton-Cook M, Roberts LW, Upton M, Beatson SA, Schembri MA.

J Antimicrob Chemother. 2015 Jul;70(7):1969-72. doi: 10.1093/jac/dkv066. Epub 2015 Mar 18.

PMID:
25786480
21.

Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition.

Beatson SA, Ben Zakour NL, Totsika M, Forde BM, Watts RE, Mabbett AN, Szubert JM, Sarkar S, Phan MD, Peters KM, Petty NK, Alikhan NF, Sullivan MJ, Gawthorne JA, Stanton-Cook M, Nhu NT, Chong TM, Yin WF, Chan KG, Hancock V, Ussery DW, Ulett GC, Schembri MA.

Infect Immun. 2015 May;83(5):1749-64. doi: 10.1128/IAI.02810-14. Epub 2015 Feb 9.

22.

Unusual genome complexity in Lactobacillus salivarius JCM1046.

Raftis EJ, Forde BM, Claesson MJ, O'Toole PW.

BMC Genomics. 2014 Sep 8;15:771. doi: 10.1186/1471-2164-15-771.

23.

The complete genome sequence of Escherichia coli EC958: a high quality reference sequence for the globally disseminated multidrug resistant E. coli O25b:H4-ST131 clone.

Forde BM, Ben Zakour NL, Stanton-Cook M, Phan MD, Totsika M, Peters KM, Chan KG, Schembri MA, Upton M, Beatson SA.

PLoS One. 2014 Aug 15;9(8):e104400. doi: 10.1371/journal.pone.0104400. eCollection 2014.

24.

Global dissemination of a multidrug resistant Escherichia coli clone.

Petty NK, Ben Zakour NL, Stanton-Cook M, Skippington E, Totsika M, Forde BM, Phan MD, Gomes Moriel D, Peters KM, Davies M, Rogers BA, Dougan G, Rodriguez-BaƱo J, Pascual A, Pitout JD, Upton M, Paterson DL, Walsh TR, Schembri MA, Beatson SA.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5694-9. doi: 10.1073/pnas.1322678111. Epub 2014 Mar 31.

25.

Next-generation sequencing technologies and their impact on microbial genomics.

Forde BM, O'Toole PW.

Brief Funct Genomics. 2013 Sep;12(5):440-53. doi: 10.1093/bfgp/els062. Epub 2013 Jan 11. Review.

PMID:
23314033
26.

Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli.

Neville BA, Forde BM, Claesson MJ, Darby T, Coghlan A, Nally K, Ross RP, O'Toole PW.

PLoS One. 2012;7(7):e40592. doi: 10.1371/journal.pone.0040592. Epub 2012 Jul 10.

27.

Draft genome sequences of Helicobacter pylori strains 17874 and P79.

Clancy CD, Forde BM, Moore SA, O'Toole PW.

J Bacteriol. 2012 May;194(9):2402. doi: 10.1128/JB.00230-12. Erratum in: J Bacteriol. 2016 Jul 1;198(13):1902.

28.

Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiota.

Riboulet-Bisson E, Sturme MH, Jeffery IB, O'Donnell MM, Neville BA, Forde BM, Claesson MJ, Harris H, Gardiner GE, Casey PG, Lawlor PG, O'Toole PW, Ross RP.

PLoS One. 2012;7(2):e31113. doi: 10.1371/journal.pone.0031113. Epub 2012 Feb 17.

29.

Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts.

Forde BM, Neville BA, O'Donnell MM, Riboulet-Bisson E, Claesson MJ, Coghlan A, Ross RP, O'Toole PW.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S13. doi: 10.1186/1475-2859-10-S1-S13. Epub 2011 Aug 30.

30.

Carbohydrate catabolic flexibility in the mammalian intestinal commensal Lactobacillus ruminis revealed by fermentation studies aligned to genome annotations.

O'Donnell MM, Forde BM, Neville B, Ross PR, O'Toole PW.

Microb Cell Fact. 2011 Aug 30;10 Suppl 1:S12. doi: 10.1186/1475-2859-10-S1-S12. Epub 2011 Aug 30.

31.

Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen.

O'Toole PW, Snelling WJ, Canchaya C, Forde BM, Hardie KR, Josenhans C, Graham RLj, McMullan G, Parkhill J, Belda E, Bentley SD.

BMC Genomics. 2010 Mar 10;11:164. doi: 10.1186/1471-2164-11-164.

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