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Items: 17

1.

Erratum: Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.

Cheng Q, Bilgin CC, Fontenay G, Chang H, Henderson M, Han J, Parvin B.

Sci Rep. 2016 Aug 24;6:31680. doi: 10.1038/srep31680. No abstract available.

2.

PHENOTYPIC CHARACTERIZATION OF BREAST INVASIVE CARCINOMA VIA TRANSFERABLE TISSUE MORPHOMETRIC PATTERNS LEARNED FROM GLIOBLASTOMA MULTIFORME.

Han J, Fontenay GV, Wang Y, Mao JH, Chang H.

Proc IEEE Int Symp Biomed Imaging. 2016 Apr;2016:1025-1028.

3.

Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.

Cheng Q, Bilgin CC, Fontenay G, Chang H, Henderson M, Han J, Parvin B.

Sci Rep. 2016 Jul 7;6:28987. doi: 10.1038/srep28987. Erratum in: Sci Rep. 2016 Aug 24;6:31680.

4.

BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models.

Bilgin CC, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.

PLoS One. 2016 Mar 15;11(3):e0148379. doi: 10.1371/journal.pone.0148379. eCollection 2016.

5.

Promotion of BRCA2-Dependent Homologous Recombination by DSS1 via RPA Targeting and DNA Mimicry.

Zhao W, Vaithiyalingam S, San Filippo J, Maranon DG, Jimenez-Sainz J, Fontenay GV, Kwon Y, Leung SG, Lu L, Jensen RB, Chazin WJ, Wiese C, Sung P.

Mol Cell. 2015 Jul 16;59(2):176-87. doi: 10.1016/j.molcel.2015.05.032. Epub 2015 Jul 2.

6.

Stress signaling from human mammary epithelial cells contributes to phenotypes of mammographic density.

DeFilippis RA, Fordyce C, Patten K, Chang H, Zhao J, Fontenay GV, Kerlikowske K, Parvin B, Tlsty TD.

Cancer Res. 2014 Sep 15;74(18):5032-5044. doi: 10.1158/0008-5472.CAN-13-3390. Epub 2014 Aug 29.

7.

Inference of causal networks from time-varying transcriptome data via sparse coding.

Zhang K, Han J, Groesser T, Fontenay G, Parvin B.

PLoS One. 2012;7(8):e42306. doi: 10.1371/journal.pone.0042306. Epub 2012 Aug 20.

8.

CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues.

DeFilippis RA, Chang H, Dumont N, Rabban JT, Chen YY, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D, Marx JJ, Tjoe JA, Ziv E, Febbraio M, Kerlikowske K, Parvin B, Tlsty TD.

Cancer Discov. 2012 Sep;2(9):826-39. Epub 2012 Jul 9.

9.

Identification of fluorescent compounds with non-specific binding property via high throughput live cell microscopy.

Nath S, Spencer VA, Han J, Chang H, Zhang K, Fontenay GV, Anderson C, Hyman JM, Nilsen-Hamilton M, Chang YT, Parvin B.

PLoS One. 2012;7(1):e28802. doi: 10.1371/journal.pone.0028802. Epub 2012 Jan 5.

10.

Morphometic analysis of TCGA glioblastoma multiforme.

Chang H, Fontenay GV, Han J, Cong G, Baehner FL, Gray JW, Spellman PT, Parvin B.

BMC Bioinformatics. 2011 Dec 20;12:484. doi: 10.1186/1471-2105-12-484.

11.

Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions.

Groesser T, Chang H, Fontenay G, Chen J, Costes SV, Helen Barcellos-Hoff M, Parvin B, Rydberg B.

Int J Radiat Biol. 2011 Jul;87(7):696-710. doi: 10.3109/09553002.2010.549535. Epub 2011 Jan 27.

PMID:
21271785
12.

Multiscale iterative voting for differential analysis of stress response for 2D and 3D cell culture models.

Han J, Chang H, Yang Q, Fontenay G, Groesser T, Barcellos-Hoff MH, Parvin B.

J Microsc. 2011 Mar;241(3):315-26. doi: 10.1111/j.1365-2818.2010.03442.x. Epub 2010 Aug 26.

13.

Exon-level microarray analyses identify alternative splicing programs in breast cancer.

Lapuk A, Marr H, Jakkula L, Pedro H, Bhattacharya S, Purdom E, Hu Z, Simpson K, Pachter L, Durinck S, Wang N, Parvin B, Fontenay G, Speed T, Garbe J, Stampfer M, Bayandorian H, Dorton S, Clark TA, Schweitzer A, Wyrobek A, Feiler H, Spellman P, Conboy J, Gray JW.

Mol Cancer Res. 2010 Jul;8(7):961-74. doi: 10.1158/1541-7786.MCR-09-0528. Epub 2010 Jul 6.

14.

MORPHOMETRIC SUBTYPING FOR A PANEL OF BREAST CANCER CELL LINES.

Han J, Chang H, Fontenay G, Wang NJ, Gray JW, Parvin B.

Proc IEEE Int Symp Biomed Imaging. 2009 Jun 28;6:791-794.

15.

A systems analysis of the chemosensitivity of breast cancer cells to the polyamine analogue PG-11047.

Kuo WL, Das D, Ziyad S, Bhattacharya S, Gibb WJ, Heiser LM, Sadanandam A, Fontenay GV, Hu Z, Wang NJ, Bayani N, Feiler HS, Neve RM, Wyrobek AJ, Spellman PT, Marton LJ, Gray JW.

BMC Med. 2009 Dec 14;7:77. doi: 10.1186/1741-7015-7-77.

16.

BioSig: an imaging bioinformatics system for phenotypic analysis.

Parvin B, Yang Q, Fontenay G, Barcellos-Hoff MH.

IEEE Trans Syst Man Cybern B Cybern. 2003;33(5):814-24. doi: 10.1109/TSMCB.2003.816929.

PMID:
18238234
17.

Analytical method transfer: new descriptive approach for acceptance criteria definition.

de Fontenay G.

J Pharm Biomed Anal. 2008 Jan 7;46(1):104-12. Epub 2007 Sep 14.

PMID:
17961955

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