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Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature.

Bovo S, Ribani A, Utzeri VJ, Schiavo G, Bertolini F, Fontanesi L.

PLoS One. 2018 Oct 31;13(10):e0205575. doi: 10.1371/journal.pone.0205575. eCollection 2018.


A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds.

Bovo S, Di Luca A, Galimberti G, Dall'Olio S, Fontanesi L.

PLoS One. 2018 Sep 12;13(9):e0199649. doi: 10.1371/journal.pone.0199649. eCollection 2018.


New Insights into the Melanophilin (MLPH) Gene Affecting Coat Color Dilution in Rabbits.

Demars J, Iannuccelli N, Utzeri VJ, Auvinet G, Riquet J, Fontanesi L, Allain D.

Genes (Basel). 2018 Aug 23;9(9). pii: E430. doi: 10.3390/genes9090430.


Entomological signatures in honey: an environmental DNA metabarcoding approach can disclose information on plant-sucking insects in agricultural and forest landscapes.

Utzeri VJ, Schiavo G, Ribani A, Tinarelli S, Bertolini F, Bovo S, Fontanesi L.

Sci Rep. 2018 Jul 3;8(1):9996. doi: 10.1038/s41598-018-27933-w.


Conservation status and historical relatedness of Italian cattle breeds.

Mastrangelo S, Ciani E, Ajmone Marsan P, Bagnato A, Battaglini L, Bozzi R, Carta A, Catillo G, Cassandro M, Casu S, Ciampolini R, Crepaldi P, D'Andrea M, Di Gerlando R, Fontanesi L, Longeri M, Macciotta NP, Mantovani R, Marletta D, Matassino D, Mele M, Pagnacco G, Pieramati C, Portolano B, Sarti FM, Tolone M, Pilla F.

Genet Sel Evol. 2018 Jun 26;50(1):35. doi: 10.1186/s12711-018-0406-x.


Genome-wide association studies for seven production traits highlight genomic regions useful to dissect dry-cured ham quality and production traits in Duroc heavy pigs.

Bertolini F, Schiavo G, Galimberti G, Bovo S, D'Andrea M, Gallo M, Buttazzoni L, Rothschild MF, Fontanesi L.

Animal. 2018 Sep;12(9):1777-1784. doi: 10.1017/S1751731118000757. Epub 2018 Apr 30.


Taking advantage from phenotype variability in a local animal genetic resource: identification of genomic regions associated with the hairless phenotype in Casertana pigs.

Schiavo G, Bertolini F, Utzeri VJ, Ribani A, Geraci C, Santoro L, Óvilo C, Fernández AI, Gallo M, Fontanesi L.

Anim Genet. 2018 Aug;49(4):321-325. doi: 10.1111/age.12665. Epub 2018 Apr 19.


Genome-wide identification of runs of homozygosity islands and associated genes in local dairy cattle breeds.

Mastrangelo S, Sardina MT, Tolone M, Di Gerlando R, Sutera AM, Fontanesi L, Portolano B.

Animal. 2018 Mar 26:1-9. doi: 10.1017/S1751731118000629. [Epub ahead of print]


Few mitochondrial DNA sequences are inserted into the turkey (Meleagris gallopavo) nuclear genome: evolutionary analyses and informativity in the domestic lineage.

Schiavo G, Strillacci MG, Ribani A, Bovo S, Roman-Ponce SI, Cerolini S, Bertolini F, Bagnato A, Fontanesi L.

Anim Genet. 2018 Jun;49(3):259-264. doi: 10.1111/age.12648. Epub 2018 Mar 9.


Application of next generation semiconductor based sequencing for species identification in dairy products.

Ribani A, Schiavo G, Utzeri VJ, Bertolini F, Geraci C, Bovo S, Fontanesi L.

Food Chem. 2018 Apr 25;246:90-98. doi: 10.1016/j.foodchem.2017.11.006. Epub 2017 Nov 3.


Looking at genetic structure and selection signatures of the Mexican chicken population using single nucleotide polymorphism markers.

Strillacci MG, Vega-Murillo VE, Román-Ponce SI, López FJR, Cozzi MC, Gorla E, Cerolini S, Bertolini F, Fontanesi L, Bagnato A.

Poult Sci. 2018 Mar 1;97(3):791-802. doi: 10.3382/ps/pex374.


Potential sensitivity of pork production situations aiming at high-quality products to the use of entire male pigs as an alternative to surgical castrates.

Bonneau M, Čandek-Potokar M, Škrlep M, Font-I-Furnols M, Aluwé M; Castrum network, Fontanesi L.

Animal. 2018 Jun;12(6):1287-1295. doi: 10.1017/S1751731117003044. Epub 2017 Nov 16.


A genome-wide association study for a proxy of intermuscular fat level in the Italian Large White breed identifies genomic regions affecting an important quality parameter for dry-cured hams.

Fontanesi L, Schiavo G, Galimberti G, Bovo S, Russo V, Gallo M, Buttazzoni L.

Anim Genet. 2017 Aug;48(4):459-465. doi: 10.1111/age.12542. Epub 2017 Feb 3.


A viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.

Bovo S, Mazzoni G, Ribani A, Utzeri VJ, Bertolini F, Schiavo G, Fontanesi L.

PLoS One. 2017 Jun 29;12(6):e0179462. doi: 10.1371/journal.pone.0179462. eCollection 2017.


Preselection statistics and Random Forest classification identify population informative single nucleotide polymorphisms in cosmopolitan and autochthonous cattle breeds.

Bertolini F, Galimberti G, Schiavo G, Mastrangelo S, Di Gerlando R, Strillacci MG, Bagnato A, Portolano B, Fontanesi L.

Animal. 2018 Jan;12(1):12-19. doi: 10.1017/S1751731117001355. Epub 2017 Jun 23.


A genomic landscape of mitochondrial DNA insertions in the pig nuclear genome provides evolutionary signatures of interspecies admixture.

Schiavo G, Hoffmann OI, Ribani A, Utzeri VJ, Ghionda MC, Bertolini F, Geraci C, Bovo S, Fontanesi L.

DNA Res. 2017 Oct 1;24(5):487-498. doi: 10.1093/dnares/dsx019.


Exploring gastric bacterial community in young pigs.

Motta V, Trevisi P, Bertolini F, Ribani A, Schiavo G, Fontanesi L, Bosi P.

PLoS One. 2017 Mar 1;12(3):e0173029. doi: 10.1371/journal.pone.0173029. eCollection 2017.


Novel Y-chromosome short tandem repeats in Sus scrofa and their variation in European wild boar and domestic pig populations.

Iacolina L, Brajković V, Canu A, Šprem N, Cubric-Curik V, Fontanesi L, Saarma U, Apollonio M, Scandura M.

Anim Genet. 2016 Dec;47(6):682-690. doi: 10.1111/age.12483. Epub 2016 Aug 25.


Genome-wide association study for ham weight loss at first salting in Italian Large White pigs: towards the genetic dissection of a key trait for dry-cured ham production.

Fontanesi L, Schiavo G, Gallo M, Baiocco C, Galimberti G, Bovo S, Russo V, Buttazzoni L.

Anim Genet. 2017 Feb;48(1):103-107. doi: 10.1111/age.12491. Epub 2016 Sep 5.


Next generation semiconductor based sequencing of bitter taste receptor genes in different pig populations and association analysis using a selective DNA pool-seq approach.

Ribani A, Bertolini F, Schiavo G, Scotti E, Utzeri VJ, Dall'Olio S, Trevisi P, Bosi P, Fontanesi L.

Anim Genet. 2017 Feb;48(1):97-102. doi: 10.1111/age.12472. Epub 2016 Jul 20.


Striatal activation reflects urgency in perceptual decision making.

van Maanen L, Fontanesi L, Hawkins GE, Forstmann BU.

Neuroimage. 2016 Oct 1;139:294-303. doi: 10.1016/j.neuroimage.2016.06.045. Epub 2016 Jun 26.


Genome-wide association study for the level of serum electrolytes in Italian Large White pigs.

Bovo S, Schiavo G, Mazzoni G, Dall'Olio S, Galimberti G, Calò DG, Scotti E, Bertolini F, Buttazzoni L, Samorè AB, Fontanesi L.

Anim Genet. 2016 Oct;47(5):597-602. doi: 10.1111/age.12459. Epub 2016 Jun 14.


Identification of a Bitter-Taste Receptor Gene Repertoire in Different Lagomorphs Species.

Ferreira AM, Marques AT, Fontanesi L, Thulin CG, Sales-Baptista E, Araújo SS, Almeida AM.

Front Genet. 2016 Apr 6;7:55. doi: 10.3389/fgene.2016.00055. eCollection 2016.


Genomic inbreeding estimation in small populations: evaluation of runs of homozygosity in three local dairy cattle breeds.

Mastrangelo S, Tolone M, Di Gerlando R, Fontanesi L, Sardina MT, Portolano B.

Animal. 2016 May;10(5):746-54. doi: 10.1017/S1751731115002943. Epub 2016 Jan 6.


Metabolomics evidences plasma and serum biomarkers differentiating two heavy pig breeds.

Bovo S, Mazzoni G, Galimberti G, Calò DG, Fanelli F, Mezzullo M, Schiavo G, Manisi A, Trevisi P, Bosi P, Dall'Olio S, Pagotto U, Fontanesi L.

Animal. 2016 Oct;10(10):1741-8. doi: 10.1017/S1751731116000483. Epub 2016 Apr 8.


Whole genome semiconductor based sequencing of farmed European sea bass (Dicentrarchus labrax) Mediterranean genetic stocks using a DNA pooling approach.

Bertolini F, Geraci C, Schiavo G, Sardina MT, Chiofalo V, Fontanesi L.

Mar Genomics. 2016 Aug;28:63-70. doi: 10.1016/j.margen.2016.03.007. Epub 2016 Mar 25.


NEUROSCIENCE. Wiring the altruistic brain.

Gluth S, Fontanesi L.

Science. 2016 Mar 4;351(6277):1028-9. doi: 10.1126/science.aaf4688. No abstract available.


LaGomiCs-Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order.

Fontanesi L, Di Palma F, Flicek P, Smith AT, Thulin CG, Alves PC; Lagomorph Genomics Consortium.

J Hered. 2016 Jul;107(4):295-308. doi: 10.1093/jhered/esw010. Epub 2016 Feb 26. Review.


Identification of Polymorphisms in the Rabbit Growth Hormone Receptor (GHR) Gene and Association with Finishing Weight in a Commercial Meat Rabbit Line.

Fontanesi L, Sparacino G, Utzeri VJ, Scotti E, Fornasini D, Dall'Olio S, Frabetti A.

Anim Biotechnol. 2016;27(2):77-83. doi: 10.1080/10495398.2015.1101697.


The albinism of the feral Asinara white donkeys (Equus asinus) is determined by a missense mutation in a highly conserved position of the tyrosinase (TYR) gene deduced protein.

Utzeri VJ, Bertolini F, Ribani A, Schiavo G, Dall'Olio S, Fontanesi L.

Anim Genet. 2016 Feb;47(1):120-4. doi: 10.1111/age.12386. Epub 2015 Nov 19.


Twenty years of artificial directional selection have shaped the genome of the Italian Large White pig breed.

Schiavo G, Galimberti G, Calò DG, Samorè AB, Bertolini F, Russo V, Gallo M, Buttazzoni L, Fontanesi L.

Anim Genet. 2016 Apr;47(2):181-91. doi: 10.1111/age.12392. Epub 2015 Dec 8.


Deconstructing the pig sex metabolome: Targeted metabolomics in heavy pigs revealed sexual dimorphisms in plasma biomarkers and metabolic pathways.

Bovo S, Mazzoni G, Calò DG, Galimberti G, Fanelli F, Mezzullo M, Schiavo G, Scotti E, Manisi A, Samoré AB, Bertolini F, Trevisi P, Bosi P, Dall'Olio S, Pagotto U, Fontanesi L.

J Anim Sci. 2015 Dec;93(12):5681-93. doi: 10.2527/jas.2015-9528.


Technology Use and Sleep Quality in Preadolescence and Adolescence.

Bruni O, Sette S, Fontanesi L, Baiocco R, Laghi F, Baumgartner E.

J Clin Sleep Med. 2015 Dec 15;11(12):1433-41. doi: 10.5664/jcsm.5282.


Next Generation Semiconductor Based Sequencing of the Donkey (Equus asinus) Genome Provided Comparative Sequence Data against the Horse Genome and a Few Millions of Single Nucleotide Polymorphisms.

Bertolini F, Scimone C, Geraci C, Schiavo G, Utzeri VJ, Chiofalo V, Fontanesi L.

PLoS One. 2015 Jul 7;10(7):e0131925. doi: 10.1371/journal.pone.0131925. eCollection 2015.


Comparison of three patterns of feed supplementation with live Saccharomyces cerevisiae yeast on postweaning diarrhea, health status, and blood metabolic profile of susceptible weaning pigs orally challenged with Escherichia coli F4ac.

Trevisi P, Colombo M, Priori D, Fontanesi L, Galimberti G, Calò G, Motta V, Latorre R, Fanelli F, Mezzullo M, Pagotto U, Gherpelli Y, D'Inca R, Bosi P.

J Anim Sci. 2015 May;93(5):2225-33. doi: 10.2527/jas.2014-8539.


A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures.

Bertolini F, Ghionda MC, D'Alessandro E, Geraci C, Chiofalo V, Fontanesi L.

PLoS One. 2015 Apr 29;10(4):e0121701. doi: 10.1371/journal.pone.0121701. eCollection 2015.


Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness.

Bovo S, Bertolini F, Schiavo G, Mazzoni G, Dall'Olio S, Fontanesi L.

Int J Genomics. 2015;2015:950737. doi: 10.1155/2015/950737. Epub 2015 Mar 4.


Combined use of principal component analysis and random forests identify population-informative single nucleotide polymorphisms: application in cattle breeds.

Bertolini F, Galimberti G, Calò DG, Schiavo G, Matassino D, Fontanesi L.

J Anim Breed Genet. 2015 Oct;132(5):346-56. doi: 10.1111/jbg.12155. Epub 2015 Mar 17.


A retrospective analysis of allele frequency changes of major genes during 20 years of selection in the Italian Large White pig breed.

Fontanesi L, Schiavo G, Scotti E, Galimberti G, Calò DG, Samorè AB, Gallo M, Russo V, Buttazzoni L.

J Anim Breed Genet. 2015 Jun;132(3):239-46. doi: 10.1111/jbg.12127. Epub 2015 Mar 1.


Coming out during adolescence: Perceived parents' reactions and internalized sexual stigma.

Baiocco R, Fontanesi L, Santamaria F, Ioverno S, Baumgartner E, Laghi F.

J Health Psychol. 2016 Aug;21(8):1809-13. doi: 10.1177/1359105314564019. Epub 2014 Dec 23.


Genomic selection in a pig population including information from slaughtered full sibs of boars within a sib-testing program.

Samorè AB, Buttazzoni L, Gallo M, Russo V, Fontanesi L.

Animal. 2015 May;9(5):750-9. doi: 10.1017/S1751731114002924. Epub 2014 Dec 16.


Next generation semiconductor based-sequencing of a nutrigenetics target gene (GPR120) and association with growth rate in Italian Large White pigs.

Fontanesi L, Bertolini F, Scotti E, Schiavo G, Colombo M, Trevisi P, Ribani A, Buttazzoni L, Russo V, Dall'Olio S.

Anim Biotechnol. 2015;26(2):92-7. doi: 10.1080/10495398.2014.881369.


Suicidal ideation in Spanish and Italian lesbian and gay young adults: the role of internalized sexual stigma.

Baiocco R, Ioverno S, Cerutti R, Santamaria F, Fontanesi L, Lingiardi V, Baumgartnert E, Laghi F.

Psicothema. 2014;26(4):490-6. doi: 10.7334/psicothema2014.1.


First description of adiaspiromycosis in an Eurasian otter (Lutra lutra) in Italy.

Malatesta D, Simpson VR, Fontanesi L, Fusillo R, Marcelli M, Bongiovanni L, Romanucci M, Palmieri C, Della Salda L.

Vet Ital. 2014 Jul-Sep;50(3):199-202. doi: 10.12834/VetIt.40.1916.8.


Analysis of the 227 bp short interspersed nuclear element (SINE) insertion of the promoter of the myostatin (MSTN) gene in different horse breeds.

Dall'Olio S, Scotti E, Fontanesi L, Tassinari M.

Vet Ital. 2014 Jul-Sep;50(3):193-7. doi: 10.12834/VetIt.61.178.3.


The genome-wide structure of two economically important indigenous Sicilian cattle breeds.

Mastrangelo S, Saura M, Tolone M, Salces-Ortiz J, Di Gerlando R, Bertolini F, Fontanesi L, Sardina MT, Serrano M, Portolano B.

J Anim Sci. 2014 Nov;92(11):4833-42. doi: 10.2527/jas.2014-7898. Epub 2014 Sep 24.


Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Martinez Barrio A, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L.

Science. 2014 Aug 29;345(6200):1074-1079. doi: 10.1126/science.1253714.


Differentiation of meat from European wild boars and domestic pigs using polymorphisms in the MC1R and NR6A1 genes.

Fontanesi L, Ribani A, Scotti E, Utzeri VJ, Veličković N, Dall'Olio S.

Meat Sci. 2014 Dec;98(4):781-4. doi: 10.1016/j.meatsci.2014.07.026. Epub 2014 Aug 5.


Copy number variants in Italian Large White pigs detected using high-density single nucleotide polymorphisms and their association with back fat thickness.

Schiavo G, Dolezal MA, Scotti E, Bertolini F, Calò DG, Galimberti G, Russo V, Fontanesi L.

Anim Genet. 2014 Oct;45(5):745-9. doi: 10.1111/age.12180. Epub 2014 Jun 24.


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