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Items: 39

1.

Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi.

Fonseca LL, Joyner CJ, Saney CL; MaHPIC Consortium, Moreno A, Barnwell JW, Galinski MR, Voit EO.

Malar J. 2018 Nov 6;17(1):410. doi: 10.1186/s12936-018-2560-6.

2.

A dynamic model of lignin biosynthesis in Brachypodium distachyon.

Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle NL, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO.

Biotechnol Biofuels. 2018 Sep 19;11:253. doi: 10.1186/s13068-018-1241-6. eCollection 2018.

3.

The three-legged stool of understanding metabolism: integrating metabolomics with biochemical genetics and computational modeling.

Downs DM, Bazurto JV, Gupta A, Fonseca LL, Voit EO.

AIMS Microbiol. 2018 Apr 8;4(2):289-303. doi: 10.3934/microbiol.2018.2.289. eCollection 2018.

4.

A Mathematical Model of the Phosphoinositide Pathway.

Olivença DV, Uliyakina I, Fonseca LL, Amaral MD, Voit EO, Pinto FR.

Sci Rep. 2018 Mar 2;8(1):3904. doi: 10.1038/s41598-018-22226-8.

5.

Mathematical models of lignin biosynthesis.

Faraji M, Fonseca LL, Escamilla-Treviño L, Barros-Rios J, Engle N, Yang ZK, Tschaplinski TJ, Dixon RA, Voit EO.

Biotechnol Biofuels. 2018 Feb 9;11:34. doi: 10.1186/s13068-018-1028-9. eCollection 2018.

6.

Reproducibility of the Lauge-Hansen, Danis-Weber, and AO classifications for ankle fractures.

Fonseca LLD, Nunes IG, Nogueira RR, Martins GEV, Mesencio AC, Kobata SI.

Rev Bras Ortop. 2017 Dec 6;53(1):101-106. doi: 10.1016/j.rboe.2017.11.013. eCollection 2018 Jan-Feb.

7.

Metabolic modeling helps interpret transcriptomic changes during malaria.

Tang Y, Gupta A, Garimalla S; MaHPIC Consortium. Electronic address: http://systemsbiology.emory.edu, Galinski MR, Styczynski MP, Fonseca LL, Voit EO.

Biochim Biophys Acta Mol Basis Dis. 2018 Jun;1864(6 Pt B):2329-2340. doi: 10.1016/j.bbadis.2017.10.023. Epub 2017 Oct 22.

8.

A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta.

Fonseca LL, Joyner CJ; MaHPIC Consortium, Galinski MR, Voit EO.

Malar J. 2017 Sep 18;16(1):375. doi: 10.1186/s12936-017-2008-4.

9.

Plasmodium knowlesi: a superb in vivo nonhuman primate model of antigenic variation in malaria.

Galinski MR, Lapp SA, Peterson MS, Ay F, Joyner CJ, LE Roch KG, Fonseca LL, Voit EO; MAHPIC CONSORTIUM.

Parasitology. 2018 Jan;145(1):85-100. doi: 10.1017/S0031182017001135. Epub 2017 Jul 17. Review.

10.

Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection.

Fonseca LL, Alezi HS, Moreno A, Barnwell JW, Galinski MR, Voit EO.

Malar J. 2016 Aug 12;15(1):410. doi: 10.1186/s12936-016-1465-5.

11.

Dynamic models of the complex microbial metapopulation of lake mendota.

Dam P, Fonseca LL, Konstantinidis KT, Voit EO.

NPJ Syst Biol Appl. 2016 Mar 24;2:16007. doi: 10.1038/npjsba.2016.7. eCollection 2016.

12.

Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast.

Chen PW, Fonseca LL, Hannun YA, Voit EO.

PLoS One. 2016 Jan 19;11(1):e0146839. doi: 10.1371/journal.pone.0146839. eCollection 2016.

13.
14.

New insights into the complex regulation of the glycolytic pathway in Lactococcus lactis. I. Construction and diagnosis of a comprehensive dynamic model.

Dolatshahi S, Fonseca LL, Voit EO.

Mol Biosyst. 2016 Jan;12(1):23-36. doi: 10.1039/c5mb00331h. Epub 2015 Nov 26.

PMID:
26609637
15.

[The social value of teeth and access to dental health services].

Fonseca LL, Nehmy RM, Mota JA.

Cien Saude Colet. 2015 Oct;20(10):3129-38. doi: 10.1590/1413-812320152010.00172015. Portuguese.

16.

Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum.

Faraji M, Fonseca LL, Escamilla-Treviño L, Dixon RA, Voit EO.

Biotechnol Biofuels. 2015 Sep 17;8:151. doi: 10.1186/s13068-015-0334-8. eCollection 2015.

17.

Comparison of mathematical frameworks for modeling erythropoiesis in the context of malaria infection.

Fonseca LL, Voit EO.

Math Biosci. 2015 Dec;270(Pt B):224-36. doi: 10.1016/j.mbs.2015.08.020. Epub 2015 Sep 8.

18.

Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast.

Chen PW, Fonseca LL, Hannun YA, Voit EO.

PLoS Comput Biol. 2015 Aug 4;11(8):e1004373. doi: 10.1371/journal.pcbi.1004373. eCollection 2015 Aug.

19.

Carbon flux analysis by 13C nuclear magnetic resonance to determine the effect of CO2 on anaerobic succinate production by Corynebacterium glutamicum.

Radoš D, Turner DL, Fonseca LL, Carvalho AL, Blombach B, Eikmanns BJ, Neves AR, Santos H.

Appl Environ Microbiol. 2014 May;80(10):3015-24. doi: 10.1128/AEM.04189-13. Epub 2014 Mar 7.

20.

Targeted deletion of RasGRP1 impairs skin tumorigenesis.

Sharma A, Fonseca LL, Rajani C, Yanagida JK, Endo Y, Cline JM, Stone JC, Ji J, Ramos JW, Lorenzo PS.

Carcinogenesis. 2014 May;35(5):1084-91. doi: 10.1093/carcin/bgu016. Epub 2014 Jan 24.

21.

Metabolic and transcriptional analysis of acid stress in Lactococcus lactis, with a focus on the kinetics of lactic acid pools.

Carvalho AL, Turner DL, Fonseca LL, Solopova A, Catarino T, Kuipers OP, Voit EO, Neves AR, Santos H.

PLoS One. 2013 Jul 3;8(7):e68470. doi: 10.1371/journal.pone.0068470. Print 2013.

22.

Coordination of rapid sphingolipid responses to heat stress in yeast.

Chen PW, Fonseca LL, Hannun YA, Voit EO.

PLoS Comput Biol. 2013;9(5):e1003078. doi: 10.1371/journal.pcbi.1003078. Epub 2013 May 30.

23.

23Na multiple quantum filtered NMR characterisation of Na+ binding and dynamics in animal cells: a comparative study and effect of Na+/Li + competition.

Fonseca CP, Fonseca LL, Montezinho LP, Alves PM, Santos H, Castro MM, Geraldes CF.

Eur Biophys J. 2013 Jul;42(7):503-19. doi: 10.1007/s00249-013-0899-8. Epub 2013 Apr 6.

PMID:
23563802
24.

Prognostic significance of baseline heart rate and its interaction with beta-blocker use in resistant hypertension: a cohort study.

Salles GF, Cardoso CR, Fonseca LL, Fiszman R, Muxfeldt ES.

Am J Hypertens. 2013 Feb;26(2):218-26. doi: 10.1093/ajh/hps004. Epub 2012 Dec 13.

PMID:
23382406
25.

Canonical modeling of the multi-scale regulation of the heat stress response in yeast.

Fonseca LL, Chen PW, Voit EO.

Metabolites. 2012 Feb 27;2(1):221-41. doi: 10.3390/metabo2010221.

26.

The glucose/xylose facilitator Gxf1 from Candida intermedia expressed in a xylose-fermenting industrial strain of Saccharomyces cerevisiae increases xylose uptake in SSCF of wheat straw.

Fonseca C, Olofsson K, Ferreira C, Runquist D, Fonseca LL, Hahn-Hägerdal B, Lidén G.

Enzyme Microb Technol. 2011 May 6;48(6-7):518-25. doi: 10.1016/j.enzmictec.2011.02.010. Epub 2011 Mar 9.

PMID:
22113025
27.

Statistical inference methods for sparse biological time series data.

Ndukum J, Fonseca LL, Santos H, Voit EO, Datta S.

BMC Syst Biol. 2011 Apr 25;5:57. doi: 10.1186/1752-0509-5-57.

28.

Complex coordination of multi-scale cellular responses to environmental stress.

Fonseca LL, Sánchez C, Santos H, Voit EO.

Mol Biosyst. 2011 Mar;7(3):731-41. doi: 10.1039/c0mb00102c. Epub 2010 Nov 18.

PMID:
21088798
29.

Estimation of metabolic pathway systems from different data sources.

Voit EO, Goel G, Chou IC, Fonseca LL.

IET Syst Biol. 2009 Nov;3(6):513-22. doi: 10.1049/iet-syb.2008.0180.

PMID:
19947777
30.

The turnover of the H3 deuterons from (2-13C) glutamate and (2-13C) glutamine reveals subcellular trafficking in the brain of partially deuterated rats.

Cerdán S, Sierra A, Fonseca LL, Ballesteros P, Rodrigues TB.

J Neurochem. 2009 May;109 Suppl 1:63-72. doi: 10.1111/j.1471-4159.2009.05962.x.

31.

Characterization of the individual glucose uptake systems of Lactococcus lactis: mannose-PTS, cellobiose-PTS and the novel GlcU permease.

Castro R, Neves AR, Fonseca LL, Pool WA, Kok J, Kuipers OP, Santos H.

Mol Microbiol. 2009 Feb;71(3):795-806. doi: 10.1111/j.1365-2958.2008.06564.x. Epub 2008 Dec 1.

32.

Role of periplasmic trehalase in uptake of trehalose by the thermophilic bacterium Rhodothermus marinus.

Jorge CD, Fonseca LL, Boos W, Santos H.

J Bacteriol. 2008 Mar;190(6):1871-8. doi: 10.1128/JB.01616-07. Epub 2008 Jan 11.

33.

Kinetic properties of the redox switch/redox coupling mechanism as determined in primary cultures of cortical neurons and astrocytes from rat brain.

Ramírez BG, Rodrigues TB, Violante IR, Cruz F, Fonseca LL, Ballesteros P, Castro MM, García-Martín ML, Cerdán S.

J Neurosci Res. 2007 Nov 15;85(15):3244-53.

PMID:
17600826
34.

The redox switch/redox coupling hypothesis.

Cerdán S, Rodrigues TB, Sierra A, Benito M, Fonseca LL, Fonseca CP, García-Martín ML.

Neurochem Int. 2006 May-Jun;48(6-7):523-30. Epub 2006 Mar 10. Review.

PMID:
16530294
35.
36.

Culturing primary brain astrocytes under a fully controlled environment in a novel bioreactor.

Sá Santos S, Fonseca LL, Monteiro MA, Carrondo MJ, Alves PM.

J Neurosci Res. 2005 Jan 1-15;79(1-2):26-32.

PMID:
15602759
37.

Effect of ethanol on the metabolism of primary astrocytes studied by (13)C- and (31)P-NMR spectroscopy.

Fonseca LL, Alves PM, Carrondo MJ, Santos H.

J Neurosci Res. 2001 Dec 1;66(5):803-11.

PMID:
11746405
38.

NMR studies on energy metabolism of immobilized primary neurons and astrocytes during hypoxia, ischemia and hypoglycemia.

Alves PM, Fonseca LL, Peixoto CC, Almeida AC, Carrondo MJ, Santos H.

NMR Biomed. 2000 Dec;13(8):438-48.

PMID:
11252029
39.

T-cell repertoire analysis in acute and chronic human Chagas' disease: differential frequencies of Vbeta5 expressing T cells.

Costa RP, Gollob KJ, Fonseca LL, Rocha MO, Chaves AC, Medrano-Mercado N, Araújo-Jorge TC, Antas PR, Colley DG, Correa-Oliveira R, Gazzinelli G, Carvalho-Parra J, Dutra WO.

Scand J Immunol. 2000 May;51(5):511-9.

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