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Items: 35

1.

Taking gastro-surveillance into the 21st century.

Fischer TK, Rasmussen LD, Fonager J.

J Clin Virol. 2019 May 31;117:43-48. doi: 10.1016/j.jcv.2019.05.013. [Epub ahead of print]

PMID:
31176211
2.

Piloting a surveillance system for HIV drug resistance in the European Union.

van de Laar MJ, Bosman A, Pharris A, Andersson E, Assoumou L, Ay E, Bannert N, Bartmeyer B, Brady M, Chaix ML, Descamps D, Dauwe K, Fonager J, Hauser A, Lunar M, Mezei M, Neary M, Poljak M, van Sighem A, Verhofstede C, Amato-Gauci AJ, Broberg EK.

Euro Surveill. 2019 May;24(19). doi: 10.2807/1560-7917.ES.2019.24.19.1800390.

3.

Characterisation of HIV-1 transmission clusters and drug-resistant mutations in Denmark, 2004 to 2016.

Petersen A, Cowan SA, Nielsen J, Fischer TK, Fonager J.

Euro Surveill. 2018 Nov;23(44). doi: 10.2807/1560-7917.ES.2018.23.44.1700633.

4.

Limited anti-HIV neutralizing antibody breadth and potency before and after HIV superinfection in Danish men who have sex with men.

Redd AD, Helleberg M, Sievers M, Schmidt SD, Doria-Rose NA, Bruno D, Traeger S, Martens C, Fonager J, Kronborg G, Packman Z, Mascola JR, Porcella SF, Gerstoft J, Quinn TC.

Infect Dis (Lond). 2019 Jan;51(1):56-61. doi: 10.1080/23744235.2018.1500708. Epub 2018 Oct 14.

PMID:
30317905
5.

Molecular epidemiology of human adenovirus infections in Denmark, 2011-2016.

Barnadas C, Schmidt DJ, Fischer TK, Fonager J.

J Clin Virol. 2018 Jul;104:16-22. doi: 10.1016/j.jcv.2018.04.012. Epub 2018 Apr 21.

PMID:
29704734
6.

A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants.

Fonager J, Stegger M, Rasmussen LD, Poulsen MW, Rønn J, Andersen PS, Fischer TK.

Sci Rep. 2017 Apr 11;7(1):813. doi: 10.1038/s41598-017-00926-x.

7.

Correction: Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole.

Fougère A, Jackson AP, Bechtsi DP, Braks JA, Annoura T, Fonager J, Spaccapelo R, Ramesar J, Chevalley-Maurel S, Klop O, van der Laan AM, Tanke HJ, Kocken CH, Pasini EM, Khan SM, Böhme U, van Ooij C, Otto TD, Janse CJ, Franke-Fayard B.

PLoS Pathog. 2017 Jan 17;13(1):e1006128. doi: 10.1371/journal.ppat.1006128. eCollection 2017 Jan.

8.

Correction: Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole.

Fougère A, Jackson AP, Paraskevi Bechtsi D, Braks JA, Annoura T, Fonager J, Spaccapelo R, Ramesar J, Chevalley-Maurel S, Klop O, van der Laan AM, Tanke HJ, Kocken CH, Pasini EM, Khan SM, Böhme U, van Ooij C, Otto TD, Janse CJ, Franke-Fayard B.

PLoS Pathog. 2016 Dec 14;12(12):e1006107. doi: 10.1371/journal.ppat.1006107. eCollection 2016 Dec.

9.

Variant Exported Blood-Stage Proteins Encoded by Plasmodium Multigene Families Are Expressed in Liver Stages Where They Are Exported into the Parasitophorous Vacuole.

Fougère A, Jackson AP, Bechtsi DP, Braks JA, Annoura T, Fonager J, Spaccapelo R, Ramesar J, Chevalley-Maurel S, Klop O, van der Laan AM, Tanke HJ, Kocken CH, Pasini EM, Khan SM, Böhme U, van Ooij C, Otto TD, Janse CJ, Franke-Fayard B.

PLoS Pathog. 2016 Nov 16;12(11):e1005917. doi: 10.1371/journal.ppat.1005917. eCollection 2016 Nov. Erratum in: PLoS Pathog. 2016 Dec 14;12 (12 ):e1006107. PLoS Pathog. 2017 Jan 17;13(1):e1006128.

10.

HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries.

Esbjörnsson J, Mild M, Audelin A, Fonager J, Skar H, Bruun Jørgensen L, Liitsola K, Björkman P, Bratt G, Gisslén M, Sönnerborg A, Nielsen C; SPREAD/ESAR Programme, Medstrand P, Albert J.

Virus Evol. 2016 Apr 27;2(1):vew010. eCollection 2016 Jan.

11.

Letter to the editor: A norovirus intervariant GII.4 recombinant in Victoria, Australia, June 2016: the next epidemic variant? Reflections and a note of caution.

Fonager J, Rasmussen LD, Fischer TK.

Euro Surveill. 2016 Oct 13;21(41). doi: 10.2807/1560-7917.ES.2016.21.41.30372. No abstract available.

12.

Identification of minority resistance mutations in the HIV-1 integrase coding region using next generation sequencing.

Fonager J, Larsson JT, Hussing C, Neess Engsig F, Nielsen C, Fischer TK.

J Clin Virol. 2015 Dec;73:95-100. doi: 10.1016/j.jcv.2015.11.009. Epub 2015 Nov 10.

PMID:
26587787
13.

Phylogenetic and epidemiological analysis of measles outbreaks in Denmark, 2013 to 2014.

Rasmussen LD, Fonager J, Knudsen LK, Andersen PH, Rønn J, Poulsen MW, Franck KT, Fischer TK.

Euro Surveill. 2015;20(39). doi: 10.2807/1560-7917.ES.2015.20.39.30027.

14.

Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing.

Vinner L, Mourier T, Friis-Nielsen J, Gniadecki R, Dybkaer K, Rosenberg J, Langhoff JL, Cruz DF, Fonager J, Izarzugaza JM, Gupta R, Sicheritz-Ponten T, Brunak S, Willerslev E, Nielsen LP, Hansen AJ.

Sci Rep. 2015 Aug 19;5:13201. doi: 10.1038/srep13201.

15.

Sequence analysis of the capsid gene during a genotype II.4 dominated norovirus season in one university hospital: identification of possible transmission routes.

Holzknecht BJ, Franck KT, Nielsen RT, Böttiger B, Fischer TK, Fonager J.

PLoS One. 2015 Jan 15;10(1):e0115331. doi: 10.1371/journal.pone.0115331. eCollection 2015.

16.

Separate norovirus outbreaks linked to one source of imported frozen raspberries by molecular analysis, Denmark, 2010-2011.

Müller L, Schultz AC, Fonager J, Jensen T, Lisby M, Hindsdal K, Krusell L, Eshøj A, Møller LT, Porsbo LJ, Böttiger BE, Kuhn K, Engberg J, Ethelberg S.

Epidemiol Infect. 2015 Aug;143(11):2299-307. doi: 10.1017/S0950268814003409. Epub 2014 Dec 22.

PMID:
25530074
17.

The application of new molecular methods in the investigation of a waterborne outbreak of norovirus in Denmark, 2012.

van Alphen LB, Dorléans F, Schultz AC, Fonager J, Ethelberg S, Dalgaard C, Adelhardt M, Engberg JH, Fischer TK, Lassen SG.

PLoS One. 2014 Sep 15;9(9):e105053. doi: 10.1371/journal.pone.0105053. eCollection 2014.

18.

Mumps resurgence in Denmark.

St-Martin G, Knudsen LK, Engsig FN, Panum I, Andersen PH, Rønn J, Fonager J, Fischer TK.

J Clin Virol. 2014 Nov;61(3):435-8. doi: 10.1016/j.jcv.2014.08.013. Epub 2014 Aug 27.

PMID:
25218244
19.

Sources of Calicivirus contamination in foodborne outbreaks in Denmark, 2005-2011--the role of the asymptomatic food handler.

Franck KT, Lisby M, Fonager J, Schultz AC, Böttiger B, Villif A, Absalonsen H, Ethelberg S.

J Infect Dis. 2015 Feb 15;211(4):563-70. doi: 10.1093/infdis/jiu479. Epub 2014 Aug 25.

PMID:
25156563
20.

Norovirus epidemiology in community and health care settings and association with patient age, Denmark.

Franck KT, Fonager J, Ersbøll AK, Böttiger B.

Emerg Infect Dis. 2014 Jul;20(7):1123-31. doi: 10.3201/eid2007.130781.

21.

Drug resistance in HIV patients with virological failure or slow virological response to antiretroviral therapy in Ethiopia.

Abdissa A, Yilma D, Fonager J, Audelin AM, Christensen LH, Olsen MF, Tesfaye M, Kaestel P, Girma T, Aseffa A, Friis H, Pedersen C, Andersen AB.

BMC Infect Dis. 2014 Apr 4;14:181. doi: 10.1186/1471-2334-14-181.

22.

Emergence of a new recombinant Sydney 2012 norovirus variant in Denmark, 26 December 2012 to 22 March 2013.

Fonager J, Barzinci S, Fischer TK.

Euro Surveill. 2013 Jun 20;18(25). pii: 20506.

23.

Rapid emergence and antigenic diversification of the norovirus 2012 Sydney variant in Denmark, October to December, 2012.

Fonager J, Hindbæk LS, Fischer TK.

Euro Surveill. 2013 Feb 28;18(9). pii: 20413. No abstract available. Erratum in: Euro Surveill. 2013;18(10):20416.

24.

Indications for worldwide increased norovirus activity associated with emergence of a new variant of genotype II.4, late 2012.

van Beek J, Ambert-Balay K, Botteldoorn N, Eden JS, Fonager J, Hewitt J, Iritani N, Kroneman A, Vennema H, Vinjé J, White PA, Koopmans M; NoroNet.

Euro Surveill. 2013 Jan 3;18(1):8-9.

25.

Proteomic and genetic analyses demonstrate that Plasmodium berghei blood stages export a large and diverse repertoire of proteins.

Pasini EM, Braks JA, Fonager J, Klop O, Aime E, Spaccapelo R, Otto TD, Berriman M, Hiss JA, Thomas AW, Mann M, Janse CJ, Kocken CH, Franke-Fayard B.

Mol Cell Proteomics. 2013 Feb;12(2):426-48. doi: 10.1074/mcp.M112.021238. Epub 2012 Nov 28.

26.

Reduced CD36-dependent tissue sequestration of Plasmodium-infected erythrocytes is detrimental to malaria parasite growth in vivo.

Fonager J, Pasini EM, Braks JA, Klop O, Ramesar J, Remarque EJ, Vroegrijk IO, van Duinen SG, Thomas AW, Khan SM, Mann M, Kocken CH, Janse CJ, Franke-Fayard BM.

J Exp Med. 2012 Jan 16;209(1):93-107. doi: 10.1084/jem.20110762. Epub 2011 Dec 19.

27.

Development of the piggyBac transposable system for Plasmodium berghei and its application for random mutagenesis in malaria parasites.

Fonager J, Franke-Fayard BM, Adams JH, Ramesar J, Klop O, Khan SM, Janse CJ, Waters AP.

BMC Genomics. 2011 Mar 20;12:155. doi: 10.1186/1471-2164-12-155.

28.

Sequestration and tissue accumulation of human malaria parasites: can we learn anything from rodent models of malaria?

Franke-Fayard B, Fonager J, Braks A, Khan SM, Janse CJ.

PLoS Pathog. 2010 Sep 30;6(9):e1001032. doi: 10.1371/journal.ppat.1001032. Review.

29.

A genotype and phenotype database of genetically modified malaria-parasites.

Janse CJ, Kroeze H, van Wigcheren A, Mededovic S, Fonager J, Franke-Fayard B, Waters AP, Khan SM.

Trends Parasitol. 2011 Jan;27(1):31-9. doi: 10.1016/j.pt.2010.06.016. Epub 2010 Jul 19. Review.

PMID:
20663715
30.

Visualisation and quantitative analysis of the rodent malaria liver stage by real time imaging.

Ploemen IH, Prudêncio M, Douradinha BG, Ramesar J, Fonager J, van Gemert GJ, Luty AJ, Hermsen CC, Sauerwein RW, Baptista FG, Mota MM, Waters AP, Que I, Lowik CW, Khan SM, Janse CJ, Franke-Fayard BM.

PLoS One. 2009 Nov 18;4(11):e7881. doi: 10.1371/journal.pone.0007881.

31.

Rapid changes in transcription profiles of the Plasmodium yoelii yir multigene family in clonal populations: lack of epigenetic memory?

Cunningham D, Fonager J, Jarra W, Carret C, Preiser P, Langhorne J.

PLoS One. 2009;4(1):e4285. doi: 10.1371/journal.pone.0004285. Epub 2009 Jan 28.

32.

Transcription and alternative splicing in the yir multigene family of the malaria parasite Plasmodium y. yoelii: identification of motifs suggesting epigenetic and post-transcriptional control of RNA expression.

Fonager J, Cunningham D, Jarra W, Koernig S, Henneman AA, Langhorne J, Preiser P.

Mol Biochem Parasitol. 2007 Nov;156(1):1-11. Epub 2007 Jun 23.

PMID:
17692398
33.

Host immunity modulates transcriptional changes in a multigene family (yir) of rodent malaria.

Cunningham DA, Jarra W, Koernig S, Fonager J, Fernandez-Reyes D, Blythe JE, Waller C, Preiser PR, Langhorne J.

Mol Microbiol. 2005 Nov;58(3):636-47.

34.
35.

Heat shock response and ageing: mechanisms and applications.

Verbeke P, Fonager J, Clark BF, Rattan SI.

Cell Biol Int. 2001;25(9):845-57. Review.

PMID:
11518492

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