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Items: 1 to 50 of 89

1.

Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.

Hubalek V, Buck M, Tan B, Foght J, Wendeberg A, Berry D, Bertilsson S, Eiler A.

mSystems. 2017 Oct 31;2(5). pii: e00038-17. doi: 10.1128/mSystems.00038-17. eCollection 2017 Sep-Oct.

2.

Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C.

Pollo SMJ, Adebusuyi AA, Straub TJ, Foght JM, Zhaxybayeva O, Nesbø CL.

Extremophiles. 2017 Nov;21(6):963-979. doi: 10.1007/s00792-017-0956-9. Epub 2017 Sep 11.

3.

The microbiology of oil sands tailings: past, present, future.

Foght JM, Gieg LM, Siddique T.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix034. Review.

PMID:
28334283
4.

Next-Generation Sequencing Assessment of Eukaryotic Diversity in Oil Sands Tailings Ponds Sediments and Surface Water.

Aguilar M, Richardson E, Tan B, Walker G, Dunfield PF, Bass D, Nesbø C, Foght J, Dacks JB.

J Eukaryot Microbiol. 2016 Nov;63(6):732-743. doi: 10.1111/jeu.12320. Epub 2016 May 2.

PMID:
27062087
5.

Trace metal mobilization from oil sands froth treatment thickened tailings exhibiting acid rock drainage.

Kuznetsova A, Kuznetsov P, Foght JM, Siddique T.

Sci Total Environ. 2016 Nov 15;571:699-710. doi: 10.1016/j.scitotenv.2016.07.039. Epub 2016 Jul 19.

PMID:
27443453
6.

Oil sands tailings ponds harbour a small core prokaryotic microbiome and diverse accessory communities.

Wilson SL, Li C, Ramos-Padrón E, Nesbø C, Soh J, Sensen CW, Voordouw G, Foght J, Gieg LM.

J Biotechnol. 2016 Oct 10;235:187-96. doi: 10.1016/j.jbiotec.2016.06.030. Epub 2016 Jul 1.

PMID:
27378620
7.

Co-occurrence of methanogenesis and N2 fixation in oil sands tailings.

Collins CEV, Foght JM, Siddique T.

Sci Total Environ. 2016 Sep 15;565:306-312. doi: 10.1016/j.scitotenv.2016.04.154. Epub 2016 May 10.

PMID:
27177137
8.

Preferential methanogenic biodegradation of short-chain n-alkanes by microbial communities from two different oil sands tailings ponds.

Mohamad Shahimin MF, Foght JM, Siddique T.

Sci Total Environ. 2016 May 15;553:250-257. doi: 10.1016/j.scitotenv.2016.02.061. Epub 2016 Feb 27.

PMID:
26925736
9.

Microbial metagenomics of oil sands tailings ponds: small bugs, big data.

Foght JM.

Genome. 2015 Dec;58(12):507-10. doi: 10.1139/gen-2015-0146. Epub 2015 Nov 18. No abstract available.

PMID:
26578036
10.

Long-Term Incubation Reveals Methanogenic Biodegradation of C5 and C6 iso-Alkanes in Oil Sands Tailings.

Siddique T, Mohamad Shahimin MF, Zamir S, Semple K, Li C, Foght JM.

Environ Sci Technol. 2015 Dec 15;49(24):14732-9. doi: 10.1021/acs.est.5b04370. Epub 2015 Nov 24.

PMID:
26571341
11.

DNA stable-isotope probing of oil sands tailings pond enrichment cultures reveals different key players for toluene degradation under methanogenic and sulfidogenic conditions.

Laban NA, Dao A, Foght J.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv039. doi: 10.1093/femsec/fiv039. Epub 2015 Apr 1.

PMID:
25873466
12.

Anaerobic alkane biodegradation by cultures enriched from oil sands tailings ponds involves multiple species capable of fumarate addition.

Tan B, Semple K, Foght J.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv042. doi: 10.1093/femsec/fiv042. Epub 2015 Apr 6.

PMID:
25873461
13.

Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples.

Tan B, Fowler SJ, Abu Laban N, Dong X, Sensen CW, Foght J, Gieg LM.

ISME J. 2015 Sep;9(9):2028-45. doi: 10.1038/ismej.2015.22. Epub 2015 Mar 3.

14.

Microbial metabolism alters pore water chemistry and increases consolidation of oil sands tailings.

Arkell N, Kuznetsov P, Kuznetsova A, Foght JM, Siddique T.

J Environ Qual. 2015 Jan;44(1):145-53. doi: 10.2134/jeq2014.04.0164.

PMID:
25602329
15.

Draft Genome Sequence of Uncultivated Toluene-Degrading Desulfobulbaceae Bacterium Tol-SR, Obtained by Stable Isotope Probing Using [13C6]Toluene.

Abu Laban N, Tan B, Dao A, Foght J.

Genome Announc. 2015 Jan 15;3(1). pii: e01423-14. doi: 10.1128/genomeA.01423-14.

16.

Draft Genome Sequence of Uncultivated Desulfosporosinus sp. Strain Tol-M, Obtained by Stable Isotope Probing Using [13C6]Toluene.

Abu Laban N, Tan B, Dao A, Foght J.

Genome Announc. 2015 Jan 15;3(1). pii: e01422-14. doi: 10.1128/genomeA.01422-14.

17.

Draft Genome Sequences of Three Smithella spp. Obtained from a Methanogenic Alkane-Degrading Culture and Oil Field Produced Water.

Tan B, de Araújo E Silva R, Rozycki T, Nesbø C, Foght J.

Genome Announc. 2014 Oct 23;2(5). pii: e01085-14. doi: 10.1128/genomeA.01085-14.

18.

Biodegradation of C7 and C8 iso-alkanes under methanogenic conditions.

Abu Laban N, Dao A, Semple K, Foght J.

Environ Microbiol. 2015 Dec;17(12):4898-915. doi: 10.1111/1462-2920.12643. Epub 2014 Dec 11.

PMID:
25331365
19.

Draft genome sequences of campylobacterales (epsilonproteobacteria) obtained from methanogenic oil sands tailings pond metagenomes.

Tan B, Foght J.

Genome Announc. 2014 Oct 16;2(5). pii: e01034-14. doi: 10.1128/genomeA.01034-14.

20.

Oil sands thickened froth treatment tailings exhibit acid rock drainage potential during evaporative drying.

Kuznetsov P, Kuznetsova A, Foght JM, Siddique T.

Sci Total Environ. 2015 Feb 1;505:1-10. doi: 10.1016/j.scitotenv.2014.09.093. Epub 2014 Oct 10.

PMID:
25306090
21.

Draft Genome Sequence of Uncultivated Firmicutes (Peptococcaceae SCADC) Single Cells Sorted from Methanogenic Alkane-Degrading Cultures.

Tan B, Charchuk R, Li C, Nesbø C, Abu Laban N, Foght J.

Genome Announc. 2014 Sep 11;2(5). pii: e00909-14. doi: 10.1128/genomeA.00909-14.

22.

Re-analysis of omics data indicates Smithella may degrade alkanes by addition to fumarate under methanogenic conditions.

Tan B, Nesbø C, Foght J.

ISME J. 2014 Dec;8(12):2353-6. doi: 10.1038/ismej.2014.87. Epub 2014 May 27. No abstract available.

23.

Microbially-accelerated consolidation of oil sands tailings. Pathway II: solid phase biogeochemistry.

Siddique T, Kuznetsov P, Kuznetsova A, Li C, Young R, Arocena JM, Foght JM.

Front Microbiol. 2014 Mar 21;5:107. doi: 10.3389/fmicb.2014.00107. eCollection 2014.

24.

Microbially-accelerated consolidation of oil sands tailings. Pathway I: changes in porewater chemistry.

Siddique T, Kuznetsov P, Kuznetsova A, Arkell N, Young R, Li C, Guigard S, Underwood E, Foght JM.

Front Microbiol. 2014 Mar 21;5:106. doi: 10.3389/fmicb.2014.00106. eCollection 2014.

25.

Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members.

Tan B, Dong X, Sensen CW, Foght J.

Genome. 2013 Oct;56(10):599-611. doi: 10.1139/gen-2013-0069. Epub 2013 May 30.

26.

Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common.

An D, Caffrey SM, Soh J, Agrawal A, Brown D, Budwill K, Dong X, Dunfield PF, Foght J, Gieg LM, Hallam SJ, Hanson NW, He Z, Jack TR, Klassen J, Konwar KM, Kuatsjah E, Li C, Larter S, Leopatra V, Nesbø CL, Oldenburg T, Pagé AP, Ramos-Padron E, Rochman FF, Saidi-Mehrabad A, Sensen CW, Sipahimalani P, Song YC, Wilson S, Wolbring G, Wong ML, Voordouw G.

Environ Sci Technol. 2013 Sep 17;47(18):10708-17. doi: 10.1021/es4020184. Epub 2013 Aug 26.

27.

Physico-chemical factors affect chloramphenicol efflux and EmhABC efflux pump expression in Pseudomonas fluorescens cLP6a.

Adebusuyi A, Foght J.

Res Microbiol. 2013 Feb-Mar;164(2):172-80. doi: 10.1016/j.resmic.2012.10.019. Epub 2012 Nov 6.

PMID:
23142491
28.

The EmhABC efflux pump in Pseudomonas fluorescens LP6a is involved in naphthalene tolerance but not efflux.

Adebusuyi AA, Foght JM.

Appl Microbiol Biotechnol. 2013 Mar;97(6):2587-96. doi: 10.1007/s00253-012-4373-9. Epub 2012 Sep 1.

PMID:
22940805
29.

Microbial communities involved in methane production from hydrocarbons in oil sands tailings.

Siddique T, Penner T, Klassen J, Nesbø C, Foght JM.

Environ Sci Technol. 2012 Sep 4;46(17):9802-10. doi: 10.1021/es302202c. Epub 2012 Aug 23.

PMID:
22894132
30.

Genome sequence of the mesophilic Thermotogales bacterium Mesotoga prima MesG1.Ag.4.2 reveals the largest Thermotogales genome to date.

Zhaxybayeva O, Swithers KS, Foght J, Green AG, Bruce D, Detter C, Han S, Teshima H, Han J, Woyke T, Pitluck S, Nolan M, Ivanova N, Pati A, Land ML, Dlutek M, Doolittle WF, Noll KM, Nesbø CL.

Genome Biol Evol. 2012;4(8):700-8. doi: 10.1093/gbe/evs059. Epub 2012 Jul 12.

31.

Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales.

Nesbø CL, Bradnan DM, Adebusuyi A, Dlutek M, Petrus AK, Foght J, Doolittle WF, Noll KM.

Extremophiles. 2012 May;16(3):387-93. doi: 10.1007/s00792-012-0437-0. Epub 2012 Mar 13.

PMID:
22411358
32.

The EmhABC efflux pump decreases the efficiency of phenanthrene biodegradation by Pseudomonas fluorescens strain LP6a.

Adebusuyi AA, Smith AY, Gray MR, Foght JM.

Appl Microbiol Biotechnol. 2012 Aug;95(3):757-66. doi: 10.1007/s00253-012-3932-4. Epub 2012 Feb 25.

PMID:
22361858
33.

An alternative physiological role for the EmhABC efflux pump in Pseudomonas fluorescens cLP6a.

Adebusuyi AA, Foght JM.

BMC Microbiol. 2011 Nov 15;11:252. doi: 10.1186/1471-2180-11-252.

34.

Influence of adhesion on aerobic biodegradation and bioremediation of liquid hydrocarbons.

Abbasnezhad H, Gray M, Foght JM.

Appl Microbiol Biotechnol. 2011 Nov;92(4):653-75. doi: 10.1007/s00253-011-3589-4. Epub 2011 Oct 1. Review.

PMID:
21964551
35.

Biological souring and mitigation in oil reservoirs.

Gieg LM, Jack TR, Foght JM.

Appl Microbiol Biotechnol. 2011 Oct;92(2):263-82. doi: 10.1007/s00253-011-3542-6. Epub 2011 Aug 20. Review.

PMID:
21858492
36.

Anaerobic biodegradation of longer-chain n-alkanes coupled to methane production in oil sands tailings.

Siddique T, Penner T, Semple K, Foght JM.

Environ Sci Technol. 2011 Jul 1;45(13):5892-9. doi: 10.1021/es200649t. Epub 2011 Jun 6.

PMID:
21644510
37.

Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus.

Klassen JL, Foght JM.

Extremophiles. 2011 Jan;15(1):45-57. doi: 10.1007/s00792-010-0336-1. Epub 2010 Nov 21.

PMID:
21104190
38.

Molecular- and cultivation-based analyses of microbial communities in oil field water and in microcosms amended with nitrate to control H2S production.

Kumaraswamy R, Ebert S, Gray MR, Fedorak PM, Foght JM.

Appl Microbiol Biotechnol. 2011 Mar;89(6):2027-38. doi: 10.1007/s00253-010-2974-8. Epub 2010 Nov 6.

PMID:
21057944
39.

Adhesion to the hydrocarbon phase increases phenanthrene degradation by Pseudomonas fluorescens LP6a.

Abbasnezhad H, Foght JM, Gray MR.

Biodegradation. 2011 Jun;22(3):485-96. doi: 10.1007/s10532-010-9421-5. Epub 2010 Oct 1.

PMID:
20886260
40.

Mature fine tailings from oil sands processing harbour diverse methanogenic communities.

Penner TJ, Foght JM.

Can J Microbiol. 2010 Jun;56(6):459-70. doi: 10.1139/w10-029.

PMID:
20657616
41.

Searching for mesophilic Thermotogales bacteria: "mesotogas" in the wild.

Nesbø CL, Kumaraswamy R, Dlutek M, Doolittle WF, Foght J.

Appl Environ Microbiol. 2010 Jul;76(14):4896-900. doi: 10.1128/AEM.02846-09. Epub 2010 May 21.

42.

Storage of oil field-produced waters alters their chemical and microbiological characteristics.

Hulecki JC, Foght JM, Fedorak PM.

J Ind Microbiol Biotechnol. 2010 May;37(5):471-81. doi: 10.1007/s10295-010-0693-x. Epub 2010 Feb 27.

PMID:
20186564
43.

Role of extracellular polymeric substances in the surface chemical reactivity of Hymenobacter aerophilus, a psychrotolerant bacterium.

Baker MG, Lalonde SV, Konhauser KO, Foght JM.

Appl Environ Microbiol. 2010 Jan;76(1):102-9. doi: 10.1128/AEM.02006-09. Epub 2009 Nov 13.

44.

Sulfide persistence in oil field waters amended with nitrate and acetate.

Hulecki JC, Foght JM, Gray MR, Fedorak PM.

J Ind Microbiol Biotechnol. 2009 Dec;36(12):1499-511. doi: 10.1007/s10295-009-0639-3. Epub 2009 Sep 30.

PMID:
19789900
45.

Analysis of force interactions between AFM tips and hydrophobic bacteria using DLVO theory.

Dorobantu LS, Bhattacharjee S, Foght JM, Gray MR.

Langmuir. 2009 Jun 16;25(12):6968-76. doi: 10.1021/la9001237.

PMID:
19334745
46.

Foreword / Avant-propos.

Foght J, Greer CW, Vincent WF, Whyte LG.

Can J Microbiol. 2009 Jan;55(1):v-vi. doi: 10.1139/w08-903. No abstract available.

PMID:
28107029
47.

Hydrophobic bacteria at the hexadecane-water interface: examination of micrometre-scale interfacial properties.

Kang Z, Yeung A, Foght JM, Gray MR.

Colloids Surf B Biointerfaces. 2008 Nov 15;67(1):59-66. doi: 10.1016/j.colsurfb.2008.07.015. Epub 2008 Aug 5.

PMID:
18778923
48.

Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospects.

Foght J.

J Mol Microbiol Biotechnol. 2008;15(2-3):93-120. doi: 10.1159/000121324. Epub 2008 Jul 28. Review.

49.

A first approximation kinetic model to predict methane generation from an oil sands tailings settling basin.

Siddique T, Gupta R, Fedorak PM, MacKinnon MD, Foght JM.

Chemosphere. 2008 Aug;72(10):1573-80. doi: 10.1016/j.chemosphere.2008.04.036. Epub 2008 Jun 10.

PMID:
18547608
50.

Effect of salt on aerobic biodegradation of petroleum hydrocarbons in contaminated groundwater.

Ulrich AC, Guigard SE, Foght JM, Semple KM, Pooley K, Armstrong JE, Biggar KW.

Biodegradation. 2009 Feb;20(1):27-38. doi: 10.1007/s10532-008-9196-0. Epub 2008 Apr 25.

PMID:
18437506

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